Wall clock time and date at job start Mon Mar 30 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.70931 * 125.57430 * 2 1 4 4 C 1.70758 * 91.15675 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 124.71450 * 179.97438 * 4 3 2 6 6 N 1.28754 * 110.57417 * 359.97438 * 4 3 2 7 7 C 1.33697 * 115.71609 * 0.02562 * 6 4 3 8 8 C 1.47081 * 123.14830 * 179.97438 * 7 6 4 9 9 O 1.21568 * 119.99907 * 180.02562 * 8 7 6 10 10 O 1.34803 * 120.00161 * 0.02853 * 8 7 6 11 11 C 1.45207 * 117.00075 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47240 * 180.02562 * 11 10 8 13 13 C 1.50695 * 109.47250 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00198 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00542 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99627 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00657 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46726 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47201 * 119.99618 * 17 15 13 20 20 H 1.48493 * 109.47440 * 240.00167 * 17 15 13 21 21 H 1.09001 * 109.47306 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47348 * 119.97489 * 1 2 3 23 23 H 1.08997 * 109.47577 * 239.97618 * 1 2 3 24 24 H 1.09005 * 109.46978 * 299.99939 * 11 10 8 25 25 H 1.09001 * 109.46759 * 59.99596 * 11 10 8 26 26 H 1.08997 * 109.47224 * 300.00142 * 12 11 10 27 27 H 1.09004 * 109.47274 * 59.99664 * 12 11 10 28 28 H 0.96996 * 119.99689 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5014 1.3903 0.0000 4 6 3.9100 0.4251 -0.0008 5 17 5.5321 1.0435 -0.0018 6 7 3.6020 -0.8250 -0.0004 7 6 2.2936 -1.1001 -0.0001 8 6 1.7599 -2.4706 -0.0003 9 8 0.5583 -2.6550 -0.0005 10 8 2.6032 -3.5224 -0.0002 11 6 2.0062 -4.8460 0.0002 12 6 3.1114 -5.9040 0.0010 13 6 2.4918 -7.2777 0.0020 14 1 1.4171 -7.3854 0.0026 15 6 3.2967 -8.3971 0.0033 16 7 4.6054 -8.2659 0.0042 17 14 2.5288 -10.0999 0.0039 18 1 1.0490 -9.9754 0.0022 19 1 2.9642 -10.8397 -1.2078 20 1 2.9624 -10.8381 1.2172 21 1 -0.3634 1.0277 0.0005 22 1 -0.3634 -0.5134 -0.8902 23 1 -0.3634 -0.5142 0.8897 24 1 1.3885 -4.9657 0.8904 25 1 1.3882 -4.9661 -0.8896 26 1 3.7294 -5.7844 -0.8889 27 1 3.7290 -5.7836 0.8910 28 1 5.1716 -9.0535 0.0047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763275601.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:06 Heat of formation + Delta-G solvation = -57.791088 kcal Electronic energy + Delta-G solvation = -16046.275867 eV Core-core repulsion = 13022.116826 eV Total energy + Delta-G solvation = -3024.159040 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75610 -39.13942 -37.22089 -36.18885 -33.32968 -32.87436 -30.37186 -28.21853 -25.33198 -24.66729 -23.05827 -20.89746 -19.83414 -19.03936 -16.93445 -16.52496 -16.30894 -16.06078 -15.61377 -15.17699 -14.49923 -13.86979 -13.54693 -13.20886 -13.13750 -12.81334 -12.34883 -12.02958 -11.91999 -11.73998 -11.23931 -11.02954 -10.76487 -10.72150 -10.42303 -10.12755 -9.83382 -9.65901 -9.63162 -9.26505 -9.15226 -8.42414 -6.07841 -4.12467 0.03031 0.31338 1.02126 1.51782 1.57620 3.09846 3.10675 3.28938 3.36276 3.41107 4.14574 4.40608 4.45118 4.74523 5.28502 5.33516 5.34673 5.43977 5.80786 6.05575 6.08677 6.63681 6.83027 6.96580 7.58513 7.66018 7.87817 8.12274 8.26001 8.93386 9.51672 11.03695 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.027645 B = 0.003776 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.603370 B = 7412.739889 C = 8399.595461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.180 4.180 3 S 0.273 5.727 4 C 0.041 3.959 5 Cl 0.033 6.967 6 N -0.399 5.399 7 C 0.032 3.968 8 C 0.538 3.462 9 O -0.503 6.503 10 O -0.332 6.332 11 C 0.074 3.926 12 C 0.024 3.976 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.072 0.928 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 23.632 -0.009 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.304 4.304 3 S 0.526 5.474 4 C -0.264 4.264 5 Cl 0.061 6.939 6 N -0.116 5.116 7 C -0.101 4.101 8 C 0.380 3.620 9 O -0.393 6.393 10 O -0.247 6.247 11 C 0.002 3.998 12 C -0.013 4.013 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.091 0.909 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.095 24.102 -0.009 24.448 hybrid contribution -0.264 -1.971 0.001 1.988 sum -4.359 22.132 -0.008 22.557 Atomic orbital electron populations 1.20443 0.84557 1.02863 1.05591 1.25827 1.04122 0.96005 1.04403 1.82844 0.93043 1.06639 1.64899 1.26990 0.95132 0.93218 1.11109 1.98441 1.15063 1.83669 1.96755 1.66764 1.16804 1.16572 1.11440 1.19213 0.86571 0.93470 1.10852 1.19627 0.84460 0.84481 0.73475 1.90839 1.15600 1.86208 1.46642 1.86730 1.39856 1.16443 1.81671 1.23758 0.98915 0.76100 1.01061 1.19175 0.92913 0.90106 0.99084 1.21005 0.93255 0.89967 1.52141 0.92177 1.24996 0.94815 0.99497 0.94917 1.69996 1.03107 1.29841 1.49766 0.86413 0.79459 0.83736 0.77688 1.19593 1.20842 1.20839 0.90891 0.88625 0.88626 0.92071 0.92065 0.95237 0.95237 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 8.81 36.00 0.32 -0.38 15 2 C -0.18 -2.09 6.40 -35.38 -0.23 -2.31 15 3 S 0.27 2.35 22.93 -107.50 -2.46 -0.11 15 4 C 0.04 0.50 7.98 51.47 0.41 0.91 15 5 Cl 0.03 0.35 29.33 -51.86 -1.52 -1.17 15 6 N -0.40 -6.47 10.61 -9.47 -0.10 -6.57 15 7 C 0.03 0.50 6.71 -84.54 -0.57 -0.07 15 8 C 0.54 10.20 7.94 34.32 0.27 10.47 15 9 O -0.50 -9.59 14.49 -19.32 -0.28 -9.87 15 10 O -0.33 -7.29 10.16 -40.77 -0.41 -7.71 15 11 C 0.07 1.70 5.42 37.15 0.20 1.91 15 12 C 0.02 0.66 5.35 -27.89 -0.15 0.51 15 13 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 15 14 H 0.06 1.65 7.74 -52.48 -0.41 1.25 15 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 16 N -0.89 -26.87 13.29 55.43 0.74 -26.14 15 17 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 15 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 21 H 0.07 0.43 8.14 -51.93 -0.42 0.01 15 22 H 0.10 0.95 7.81 -51.93 -0.41 0.54 15 23 H 0.10 0.95 7.81 -51.93 -0.41 0.54 15 24 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 287.19 15.07 4.33 4.33 Total: -1.00 -32.36 287.19 -7.35 -39.71 By element: Atomic # 1 Polarization: -3.98 SS G_CDS: -2.46 Total: -6.45 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.15 Total: -2.67 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.64 Total: -32.71 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.69 Total: -17.57 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.46 Total: -0.11 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.52 Total: -1.17 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.36 -7.35 -39.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763275601.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.080 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds