Wall clock time and date at job start Mon Mar 30 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.38628 * 119.99884 * 179.72396 * 10 9 7 12 12 N 1.33051 * 120.51578 * 0.02562 * 11 10 9 13 13 C 1.31742 * 120.76655 * 179.71680 * 12 11 10 14 14 N 1.31794 * 121.87155 * 0.56729 * 13 12 11 15 15 C 1.32754 * 120.96528 * 359.71971 * 14 13 12 16 16 F 1.35097 * 120.43065 * 180.02562 * 15 14 13 17 17 C 1.38568 * 119.13208 * 359.97438 * 15 14 13 18 18 Br 1.89095 * 120.85226 * 180.02562 * 17 15 14 19 19 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 21 21 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 22 22 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 23 23 H 1.07995 * 119.06497 * 180.28838 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3628 -2.8286 -0.0073 12 7 6.2364 -1.8251 -0.0129 13 6 7.5327 -2.0602 -0.0132 14 7 8.0178 -3.2856 -0.0192 15 6 7.2107 -4.3397 -0.0195 16 9 7.7196 -5.5911 -0.0251 17 6 5.8396 -4.1395 -0.0130 18 35 4.6454 -5.6057 -0.0124 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 3.3695 -3.3126 -0.0010 23 1 8.2174 -1.2250 -0.0131 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853547981.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:26 Heat of formation + Delta-G solvation = 12.330811 kcal Electronic energy + Delta-G solvation = -13349.974915 eV Core-core repulsion = 10580.508477 eV Total energy + Delta-G solvation = -2769.466437 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 274.976 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.20540 -40.73967 -36.33672 -33.14729 -32.93074 -31.75564 -29.59023 -27.70182 -24.23564 -23.51880 -21.73982 -18.92523 -17.99816 -17.11152 -16.38446 -15.79978 -15.15312 -14.84413 -14.49981 -14.46909 -13.80157 -13.43247 -13.05183 -12.52632 -11.56764 -11.11647 -11.08006 -10.86174 -10.60579 -10.55248 -10.06967 -9.64318 -9.42037 -9.26511 -8.84184 -7.86434 -6.32727 -4.37420 0.72517 1.29366 1.52263 3.16255 3.19519 3.26656 3.29617 3.45733 3.72535 4.18288 4.21654 4.74584 4.90155 5.01704 5.37523 6.20238 6.44300 6.70923 6.84301 7.12194 7.33361 7.74620 8.20101 8.27045 8.65273 9.24054 10.78952 Molecular weight = 274.98amu Principal moments of inertia in cm(-1) A = 0.027861 B = 0.006752 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.754752 B = 4145.777394 C = 5135.381471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.655 5.655 11 C 0.483 3.517 12 N -0.570 5.570 13 C 0.385 3.615 14 N -0.601 5.601 15 C 0.414 3.586 16 F -0.094 7.094 17 C -0.314 4.314 18 Br -0.016 7.016 19 H 0.270 0.730 20 H 0.035 0.965 21 H 0.030 0.970 22 H 0.415 0.585 23 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 -8.343 0.015 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.124 4.124 3 Si 0.704 3.296 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.590 4.590 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.279 5.279 11 C 0.232 3.768 12 N -0.297 5.297 13 C 0.095 3.905 14 N -0.329 5.329 15 C 0.253 3.747 16 F -0.073 7.073 17 C -0.407 4.407 18 Br 0.067 6.933 19 H 0.080 0.920 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.255 0.745 23 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 11.841 -7.841 0.015 14.202 hybrid contribution -0.092 -0.030 -0.024 0.100 sum 11.749 -7.872 -0.010 14.142 Atomic orbital electron populations 1.69870 1.06252 1.27641 1.48553 1.24771 0.94815 0.99164 0.93644 0.86805 0.80585 0.83107 0.79120 1.19743 1.20780 1.18310 1.21023 0.88168 0.95502 1.54357 0.90120 1.19747 0.95609 0.76988 0.97589 1.45618 1.00390 1.12447 1.69450 1.18224 0.87825 0.86042 0.84683 1.68261 1.03413 1.33573 1.24451 1.24659 0.89097 0.91775 0.84953 1.67975 1.39717 0.99246 1.25961 1.17649 0.86128 0.80991 0.89897 1.91664 1.87911 1.35537 1.92181 1.22561 0.93991 0.94705 1.29472 1.96674 1.59529 1.38966 1.98146 0.92047 0.94762 0.95214 0.74542 0.77411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.96 55.43 0.77 -24.73 14 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 14 3 Si 0.88 20.12 27.47 -169.99 -4.67 15.45 14 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 14 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 14 6 H -0.26 -5.73 6.54 56.52 0.37 -5.36 14 7 C -0.55 -14.53 9.83 -34.44 -0.34 -14.87 14 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 14 9 C 0.22 5.03 4.55 -5.19 -0.02 5.01 14 10 N -0.66 -12.89 5.65 -61.45 -0.35 -13.24 14 11 C 0.48 8.66 7.51 -154.69 -1.16 7.50 14 12 N -0.57 -9.80 9.70 -13.81 -0.13 -9.93 14 13 C 0.39 5.36 12.28 -92.20 -1.13 4.23 14 14 N -0.60 -9.01 10.45 -14.96 -0.16 -9.17 14 15 C 0.41 6.43 8.47 -17.03 -0.14 6.29 14 16 F -0.09 -1.38 16.85 2.25 0.04 -1.34 14 17 C -0.31 -5.08 6.29 -38.99 -0.25 -5.32 14 18 Br -0.02 -0.23 31.96 -68.01 -2.17 -2.40 14 19 H 0.27 7.24 8.31 -40.82 -0.34 6.90 14 20 H 0.03 0.80 7.20 -51.93 -0.37 0.42 14 21 H 0.03 0.69 7.57 -51.93 -0.39 0.29 14 22 H 0.42 7.84 6.85 -40.82 -0.28 7.56 14 23 H 0.21 1.95 8.06 -52.49 -0.42 1.53 14 LS Contribution 237.02 15.07 3.57 3.57 Total: -1.00 -28.16 237.02 -7.29 -35.44 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -1.05 Total: 1.42 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -3.14 Total: 4.92 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.14 Total: -57.06 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -2.17 Total: -2.40 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.16 -7.29 -35.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853547981.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.776 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds