Wall clock time and date at job start Mon Mar 30 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.38628 * 119.99884 * 179.72396 * 10 9 7 12 12 N 1.33051 * 120.51578 * 0.02562 * 11 10 9 13 13 C 1.31742 * 120.76655 * 179.71680 * 12 11 10 14 14 N 1.31794 * 121.87155 * 0.56729 * 13 12 11 15 15 C 1.32754 * 120.96528 * 359.71971 * 14 13 12 16 16 F 1.35097 * 120.43065 * 180.02562 * 15 14 13 17 17 C 1.38568 * 119.13208 * 359.97438 * 15 14 13 18 18 Br 1.89095 * 120.85226 * 180.02562 * 17 15 14 19 19 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 21 21 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 22 22 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 23 23 H 1.07995 * 119.06497 * 180.28838 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3628 -2.8286 -0.0073 12 7 6.2364 -1.8251 -0.0129 13 6 7.5327 -2.0602 -0.0132 14 7 8.0178 -3.2856 -0.0192 15 6 7.2107 -4.3397 -0.0195 16 9 7.7196 -5.5911 -0.0251 17 6 5.8396 -4.1395 -0.0130 18 35 4.6454 -5.6057 -0.0124 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 3.3695 -3.3126 -0.0010 23 1 8.2174 -1.2250 -0.0131 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853547981.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:26 Heat of formation + Delta-G solvation = -5.419807 kcal Electronic energy + Delta-G solvation = -13350.744639 eV Core-core repulsion = 10580.508477 eV Total energy + Delta-G solvation = -2770.236162 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 274.976 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.40742 -42.00234 -37.81180 -35.00298 -34.17429 -33.29215 -30.92646 -29.39830 -25.54187 -24.97801 -23.40499 -20.33049 -19.33795 -18.83965 -17.60782 -17.32723 -16.56365 -16.35993 -15.88705 -15.77122 -15.25770 -14.88578 -14.60725 -14.40176 -12.97946 -12.95675 -12.63332 -12.10956 -12.08150 -11.89508 -11.79542 -11.57625 -10.90013 -10.65803 -10.52230 -9.30692 -8.39008 -6.48742 -0.48065 -0.01049 0.29619 1.38963 1.40100 1.52363 1.87068 2.16438 2.30792 2.49988 2.96809 3.04988 3.41955 3.59678 4.26548 4.65343 5.02903 5.07797 5.22015 5.40461 5.68586 6.18810 6.33587 6.57250 6.96984 7.17883 8.75913 Molecular weight = 274.98amu Principal moments of inertia in cm(-1) A = 0.027861 B = 0.006752 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.754752 B = 4145.777394 C = 5135.381471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.024 3.976 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.558 4.558 8 H 0.049 0.951 9 C 0.240 3.760 10 N -0.670 5.670 11 C 0.475 3.525 12 N -0.591 5.591 13 C 0.394 3.606 14 N -0.599 5.599 15 C 0.415 3.585 16 F -0.088 7.088 17 C -0.319 4.319 18 Br -0.004 7.004 19 H 0.272 0.728 20 H 0.032 0.968 21 H 0.030 0.970 22 H 0.415 0.585 23 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.323 -7.668 0.008 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.176 4.176 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.166 1.166 7 C -0.596 4.596 8 H 0.067 0.933 9 C 0.117 3.883 10 N -0.296 5.296 11 C 0.227 3.773 12 N -0.318 5.318 13 C 0.106 3.894 14 N -0.326 5.326 15 C 0.254 3.746 16 F -0.067 7.067 17 C -0.412 4.412 18 Br 0.079 6.921 19 H 0.082 0.918 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.254 0.746 23 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 14.152 -7.197 0.008 15.876 hybrid contribution -0.724 -0.380 -0.024 0.818 sum 13.427 -7.576 -0.016 15.417 Atomic orbital electron populations 1.70005 1.08121 1.28789 1.50285 1.25699 0.95588 1.03138 0.93214 0.85744 0.79709 0.78199 0.79597 1.18890 1.20512 1.16618 1.21283 0.90326 0.94423 1.53548 0.93285 1.19322 0.92899 0.78753 0.97281 1.45325 1.01405 1.11141 1.71707 1.18306 0.87155 0.87007 0.84880 1.68302 1.04581 1.33751 1.25133 1.25590 0.88588 0.92534 0.82720 1.68110 1.39525 0.99502 1.25474 1.17732 0.85989 0.81416 0.89460 1.91680 1.87734 1.35256 1.92019 1.22589 0.94600 0.94621 1.29364 1.96686 1.59286 1.38023 1.98126 0.91841 0.95006 0.95184 0.74551 0.72875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.96 21.45 0.30 -54.45 14 2 C 0.02 1.30 5.47 84.66 0.46 1.76 14 3 Si 0.95 40.92 27.47 68.60 1.88 42.80 14 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 14 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 14 6 H -0.24 -9.81 6.54 99.48 0.65 -9.16 14 7 C -0.56 -29.77 9.83 25.60 0.25 -29.52 14 8 H 0.05 2.85 7.84 -2.91 -0.02 2.83 14 9 C 0.24 10.71 4.55 85.63 0.39 11.10 14 10 N -0.67 -26.07 5.65 -348.32 -1.97 -28.04 14 11 C 0.48 16.39 7.51 133.08 1.00 17.39 14 12 N -0.59 -18.86 9.70 -197.62 -1.92 -20.77 14 13 C 0.39 9.63 12.28 180.90 2.22 11.85 14 14 N -0.60 -16.17 10.45 -201.26 -2.10 -18.27 14 15 C 0.42 11.99 8.47 84.63 0.72 12.71 14 16 F -0.09 -2.39 16.85 44.97 0.76 -1.63 14 17 C -0.32 -9.84 6.29 22.65 0.14 -9.70 14 18 Br 0.00 -0.11 31.96 -20.37 -0.65 -0.76 14 19 H 0.27 14.86 8.31 -92.71 -0.77 14.09 14 20 H 0.03 1.44 7.20 -2.38 -0.02 1.42 14 21 H 0.03 1.34 7.57 -2.39 -0.02 1.32 14 22 H 0.42 15.82 6.85 -92.71 -0.64 15.19 14 23 H 0.26 3.55 8.06 -2.91 -0.02 3.53 14 Total: -1.00 -59.91 237.02 2.07 -57.84 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.58 Total: 7.69 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 5.18 Total: 15.60 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -5.69 Total: -121.53 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.76 Total: -1.63 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.88 Total: 42.80 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -0.65 Total: -0.76 kcal Total: -59.91 2.07 -57.84 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853547981.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.420 kcal (2) G-P(sol) polarization free energy of solvation -59.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds