Wall clock time and date at job start Mon Mar 30 2020 01:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00014 * 2 1 4 4 C 1.52994 * 109.47184 * 124.99763 * 3 2 1 5 5 H 1.09000 * 109.47257 * 54.99855 * 4 3 2 6 6 N 1.46904 * 109.47449 * 294.99806 * 4 3 2 7 7 C 1.46900 * 110.99705 * 84.99816 * 6 4 3 8 8 C 1.52997 * 109.47171 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47140 * 54.99948 * 8 7 6 10 10 C 1.53006 * 109.47164 * 294.99999 * 8 7 6 11 11 C 1.52999 * 109.47269 * 175.00495 * 8 7 6 12 12 C 1.50704 * 109.47295 * 185.00271 * 11 8 7 13 13 H 1.08002 * 119.99563 * 359.97438 * 12 11 8 14 14 C 1.37872 * 120.00100 * 179.97438 * 12 11 8 15 15 N 1.31522 * 120.00222 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99904 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47016 * 60.00439 * 16 14 12 18 18 H 1.48503 * 109.47273 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47441 * 300.00171 * 16 14 12 20 20 C 1.50703 * 109.47420 * 175.00122 * 4 3 2 21 21 C 1.38652 * 120.79059 * 79.71703 * 20 4 3 22 22 C 1.38208 * 119.15986 * 179.75988 * 21 20 4 23 23 N 1.31866 * 120.76545 * 0.53605 * 22 21 20 24 24 C 1.31868 * 121.72660 * 359.73510 * 23 22 21 25 25 C 1.38208 * 120.76352 * 359.97438 * 24 23 22 26 26 H 1.07998 * 119.99823 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99907 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99907 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46958 * 4.99951 * 3 2 1 30 30 H 1.09007 * 109.47051 * 245.00130 * 3 2 1 31 31 H 1.00898 * 111.00150 * 321.04937 * 6 4 3 32 32 H 1.09006 * 109.47197 * 59.99888 * 7 6 4 33 33 H 1.09001 * 109.47612 * 300.00471 * 7 6 4 34 34 H 1.09001 * 109.47002 * 59.99738 * 10 8 7 35 35 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47050 * 300.00004 * 10 8 7 37 37 H 1.09000 * 109.46738 * 304.99766 * 11 8 7 38 38 H 1.08994 * 109.47465 * 64.99853 * 11 8 7 39 39 H 0.96995 * 119.99658 * 179.97438 * 15 14 12 40 40 H 1.07994 * 120.41619 * 0.02562 * 21 20 4 41 41 H 1.07997 * 119.61617 * 180.24623 * 22 21 20 42 42 H 1.08006 * 119.62174 * 180.02562 * 24 23 22 43 43 H 1.08009 * 120.41652 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.6826 0.4573 1.1404 6 7 2.2764 1.3224 2.4396 7 6 1.9332 -0.0500 2.8356 8 6 1.1450 -0.0205 4.1466 9 1 0.2772 0.6294 4.0343 10 6 2.0397 0.5125 5.2677 11 6 0.6805 -1.4361 4.4945 12 6 -0.1982 -1.3901 5.7180 13 1 -0.4043 -0.4456 6.1995 14 6 -0.7389 -2.5537 6.2225 15 7 -0.4874 -3.7040 5.6364 16 14 -1.8275 -2.4967 7.7395 17 1 -3.0096 -1.6399 7.4684 18 1 -2.2785 -3.8708 8.0771 19 1 -1.0594 -1.9344 8.8792 20 6 3.8747 2.5826 1.1121 21 6 3.3718 3.8005 1.5435 22 6 4.1730 4.9242 1.4691 23 7 5.3975 4.8488 0.9854 24 6 5.9064 3.7088 0.5611 25 6 5.1664 2.5425 0.6100 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4492 1.8956 2.3680 32 1 2.8472 -0.6277 2.9736 33 1 1.3257 -0.5117 2.0572 34 1 2.3707 1.5211 5.0199 35 1 1.4783 0.5331 6.2017 36 1 2.9075 -0.1374 5.3800 37 1 0.1171 -1.8494 3.6579 38 1 1.5484 -2.0646 4.6939 39 1 -0.8676 -4.5225 5.9916 40 1 2.3684 3.8694 1.9366 41 1 3.7902 5.8760 1.8068 42 1 6.9136 3.6859 0.1715 43 1 5.5891 1.6117 0.2613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877046082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:54 Heat of formation + Delta-G solvation = 34.772436 kcal Electronic energy + Delta-G solvation = -20826.290001 eV Core-core repulsion = 17871.042741 eV Total energy + Delta-G solvation = -2955.247261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.35740 -38.04186 -35.33665 -33.52904 -32.64560 -31.39508 -31.12041 -28.54025 -26.72827 -25.20452 -24.22395 -23.49686 -22.33612 -21.00450 -20.05560 -18.91990 -16.84996 -16.46389 -16.19426 -15.64133 -15.61656 -15.04760 -14.54531 -14.26437 -13.92818 -13.83591 -13.65484 -13.53627 -13.08214 -12.60482 -12.29385 -11.93112 -11.80246 -11.54885 -11.36664 -11.28057 -11.03751 -10.84919 -10.77820 -10.31275 -10.27250 -9.74329 -9.65353 -9.54562 -9.53293 -9.20732 -9.12028 -8.95009 -8.32781 -7.99334 -5.97940 -3.98961 1.07939 1.20093 2.28221 3.33943 3.38372 3.40905 3.74273 4.20422 4.38687 4.47632 4.59566 4.73408 4.89002 4.97303 5.07489 5.12908 5.26639 5.28804 5.37957 5.49210 5.56658 5.66769 5.71676 5.80416 5.89533 5.95101 6.01932 6.17952 6.28024 6.42029 6.56899 6.61093 6.64413 6.67878 6.72565 7.00576 7.17672 7.19367 7.32549 7.57663 7.69135 7.85372 7.89831 8.02314 8.46507 9.07191 9.64410 11.13541 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.024045 B = 0.003723 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.200293 B = 7518.310451 C = 8182.144368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.156 4.156 3 C -0.115 4.115 4 C 0.125 3.875 5 H 0.090 0.910 6 N -0.674 5.674 7 C 0.055 3.945 8 C -0.081 4.081 9 H 0.052 0.948 10 C -0.123 4.123 11 C 0.030 3.970 12 C -0.513 4.513 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.017 4.017 21 C -0.150 4.150 22 C 0.094 3.906 23 N -0.493 5.493 24 C 0.094 3.906 25 C -0.171 4.171 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.337 0.663 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.038 0.962 37 H 0.012 0.988 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.133 0.867 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.950 12.187 -13.086 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.174 4.174 3 C -0.154 4.154 4 C 0.014 3.986 5 H 0.108 0.892 6 N -0.304 5.304 7 C -0.073 4.073 8 C -0.099 4.099 9 H 0.070 0.930 10 C -0.180 4.180 11 C -0.008 4.008 12 C -0.551 4.551 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.025 4.025 21 C -0.170 4.170 22 C -0.063 4.063 23 N -0.203 5.203 24 C -0.063 4.063 25 C -0.191 4.191 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.151 0.849 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.981 12.767 -12.696 20.121 hybrid contribution -1.859 -1.201 0.331 2.238 sum 7.122 11.566 -12.366 18.369 Atomic orbital electron populations 1.23854 0.95841 1.02096 1.00430 1.22774 0.96164 0.97984 1.00437 1.21471 0.98550 0.96132 0.99234 1.20480 0.94435 0.94690 0.88963 0.89172 1.60660 1.27304 1.13530 1.28939 1.22417 0.99521 0.87498 0.97884 1.21177 0.96185 1.00410 0.92173 0.92961 1.21594 0.98763 0.98928 0.98748 1.19091 0.95932 0.89559 0.96220 1.21202 1.29206 0.93019 1.11675 0.92675 1.25010 0.96689 0.95635 0.97157 1.69955 1.45190 0.97986 1.40589 0.86703 0.81024 0.76923 0.83618 1.20321 1.21382 1.20269 1.20273 0.93785 0.95101 0.93376 1.21942 1.01797 0.92888 1.00390 1.22729 0.89679 0.98512 0.95350 1.67638 1.13636 1.28550 1.10454 1.22665 0.99652 0.87896 0.96046 1.22012 0.94867 1.00160 1.02110 0.88107 0.88791 0.87200 0.91182 0.90688 0.84436 0.91874 0.93834 0.94025 0.92863 0.94268 0.96964 0.96699 0.93067 0.84869 0.83045 0.83087 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 13.83 29.01 0.40 -1.77 16 2 C -0.16 -1.76 6.65 -36.03 -0.24 -2.00 16 3 C -0.11 -1.15 5.11 -27.89 -0.14 -1.29 16 4 C 0.12 1.38 2.46 -68.86 -0.17 1.21 16 5 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 6 N -0.67 -8.92 5.17 -107.95 -0.56 -9.48 16 7 C 0.05 0.89 4.65 -3.83 -0.02 0.87 16 8 C -0.08 -1.60 2.48 -90.62 -0.22 -1.82 16 9 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 10 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 11 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 12 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 13 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.02 -0.18 4.98 -104.32 -0.52 -0.70 16 21 C -0.15 -1.60 9.43 -39.44 -0.37 -1.97 16 22 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 23 N -0.49 -5.90 10.36 -13.25 -0.14 -6.04 16 24 C 0.09 0.97 11.18 -17.55 -0.20 0.78 16 25 C -0.17 -1.72 9.78 -39.44 -0.39 -2.10 16 26 H 0.10 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.09 1.01 7.84 -52.49 -0.41 0.60 16 28 H 0.11 1.26 8.04 -52.49 -0.42 0.84 16 29 H 0.07 0.68 7.69 -51.93 -0.40 0.28 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.34 4.27 7.86 -39.29 -0.31 3.96 16 32 H 0.06 1.07 8.06 -51.93 -0.42 0.66 16 33 H 0.04 0.71 4.79 -51.93 -0.25 0.46 16 34 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 35 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.13 1.28 7.39 -52.49 -0.39 0.90 16 41 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -30.56 350.97 -9.00 -39.56 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.07 Total: 2.62 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -2.24 Total: -22.47 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.04 Total: -41.63 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.56 -9.00 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877046082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.335 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds