Wall clock time and date at job start Mon Mar 30 2020 01:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00014 * 2 1 4 4 C 1.52994 * 109.47184 * 124.99763 * 3 2 1 5 5 H 1.09000 * 109.47257 * 54.99855 * 4 3 2 6 6 N 1.46904 * 109.47449 * 294.99806 * 4 3 2 7 7 C 1.46900 * 110.99705 * 84.99816 * 6 4 3 8 8 C 1.52997 * 109.47171 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47140 * 54.99948 * 8 7 6 10 10 C 1.53006 * 109.47164 * 294.99999 * 8 7 6 11 11 C 1.52999 * 109.47269 * 175.00495 * 8 7 6 12 12 C 1.50704 * 109.47295 * 185.00271 * 11 8 7 13 13 H 1.08002 * 119.99563 * 359.97438 * 12 11 8 14 14 C 1.37872 * 120.00100 * 179.97438 * 12 11 8 15 15 N 1.31522 * 120.00222 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99904 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47016 * 60.00439 * 16 14 12 18 18 H 1.48503 * 109.47273 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47441 * 300.00171 * 16 14 12 20 20 C 1.50703 * 109.47420 * 175.00122 * 4 3 2 21 21 C 1.38652 * 120.79059 * 79.71703 * 20 4 3 22 22 C 1.38208 * 119.15986 * 179.75988 * 21 20 4 23 23 N 1.31866 * 120.76545 * 0.53605 * 22 21 20 24 24 C 1.31868 * 121.72660 * 359.73510 * 23 22 21 25 25 C 1.38208 * 120.76352 * 359.97438 * 24 23 22 26 26 H 1.07998 * 119.99823 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99907 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99907 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46958 * 4.99951 * 3 2 1 30 30 H 1.09007 * 109.47051 * 245.00130 * 3 2 1 31 31 H 1.00898 * 111.00150 * 321.04937 * 6 4 3 32 32 H 1.09006 * 109.47197 * 59.99888 * 7 6 4 33 33 H 1.09001 * 109.47612 * 300.00471 * 7 6 4 34 34 H 1.09001 * 109.47002 * 59.99738 * 10 8 7 35 35 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47050 * 300.00004 * 10 8 7 37 37 H 1.09000 * 109.46738 * 304.99766 * 11 8 7 38 38 H 1.08994 * 109.47465 * 64.99853 * 11 8 7 39 39 H 0.96995 * 119.99658 * 179.97438 * 15 14 12 40 40 H 1.07994 * 120.41619 * 0.02562 * 21 20 4 41 41 H 1.07997 * 119.61617 * 180.24623 * 22 21 20 42 42 H 1.08006 * 119.62174 * 180.02562 * 24 23 22 43 43 H 1.08009 * 120.41652 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.6826 0.4573 1.1404 6 7 2.2764 1.3224 2.4396 7 6 1.9332 -0.0500 2.8356 8 6 1.1450 -0.0205 4.1466 9 1 0.2772 0.6294 4.0343 10 6 2.0397 0.5125 5.2677 11 6 0.6805 -1.4361 4.4945 12 6 -0.1982 -1.3901 5.7180 13 1 -0.4043 -0.4456 6.1995 14 6 -0.7389 -2.5537 6.2225 15 7 -0.4874 -3.7040 5.6364 16 14 -1.8275 -2.4967 7.7395 17 1 -3.0096 -1.6399 7.4684 18 1 -2.2785 -3.8708 8.0771 19 1 -1.0594 -1.9344 8.8792 20 6 3.8747 2.5826 1.1121 21 6 3.3718 3.8005 1.5435 22 6 4.1730 4.9242 1.4691 23 7 5.3975 4.8488 0.9854 24 6 5.9064 3.7088 0.5611 25 6 5.1664 2.5425 0.6100 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4492 1.8956 2.3680 32 1 2.8472 -0.6277 2.9736 33 1 1.3257 -0.5117 2.0572 34 1 2.3707 1.5211 5.0199 35 1 1.4783 0.5331 6.2017 36 1 2.9075 -0.1374 5.3800 37 1 0.1171 -1.8494 3.6579 38 1 1.5484 -2.0646 4.6939 39 1 -0.8676 -4.5225 5.9916 40 1 2.3684 3.8694 1.9366 41 1 3.7902 5.8760 1.8068 42 1 6.9136 3.6859 0.1715 43 1 5.5891 1.6117 0.2613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877046082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:54 Heat of formation + Delta-G solvation = 17.648874 kcal Electronic energy + Delta-G solvation = -20827.032534 eV Core-core repulsion = 17871.042741 eV Total energy + Delta-G solvation = -2955.989794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.16611 -39.11480 -36.87377 -34.65191 -34.28108 -32.61819 -31.98407 -29.67031 -28.56829 -26.59544 -25.26625 -24.53967 -23.81298 -21.91526 -21.16929 -20.32597 -18.48635 -17.64304 -17.25293 -16.65957 -16.52873 -16.37004 -16.03343 -15.58713 -15.02055 -14.79461 -14.70168 -14.40099 -14.34458 -14.08454 -13.95453 -13.27600 -13.09334 -12.87851 -12.74512 -12.62947 -12.54355 -12.23625 -12.15730 -12.00434 -11.84311 -11.48095 -11.07563 -10.95111 -10.56448 -10.51316 -10.36966 -10.32623 -9.96714 -9.07885 -8.16452 -6.25132 0.31814 0.39228 1.36658 1.40312 1.42646 1.50206 2.42496 2.93827 3.17071 3.22052 3.67006 3.70214 3.90180 4.10329 4.12981 4.19736 4.31133 4.35291 4.36344 4.45351 4.48363 4.58654 4.70230 4.82216 4.90990 4.96903 4.97874 5.00294 5.05129 5.09378 5.18326 5.30427 5.45826 5.50071 5.52629 5.59453 5.71294 5.80487 5.84409 5.88622 5.91191 6.10958 6.33483 6.50320 6.90957 7.12605 7.43032 8.95251 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.024045 B = 0.003723 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.200293 B = 7518.310451 C = 8182.144368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.106 4.106 4 C 0.131 3.869 5 H 0.088 0.912 6 N -0.672 5.672 7 C 0.071 3.929 8 C -0.071 4.071 9 H 0.053 0.947 10 C -0.113 4.113 11 C 0.036 3.964 12 C -0.529 4.529 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.958 3.042 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.269 1.269 20 C -0.026 4.026 21 C -0.156 4.156 22 C 0.084 3.916 23 N -0.518 5.518 24 C 0.086 3.914 25 C -0.173 4.173 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.343 0.657 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.031 0.969 37 H -0.013 1.013 38 H -0.014 1.014 39 H 0.261 0.739 40 H 0.142 0.858 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.165 13.708 -13.179 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.174 4.174 3 C -0.145 4.145 4 C 0.021 3.979 5 H 0.106 0.894 6 N -0.303 5.303 7 C -0.058 4.058 8 C -0.090 4.090 9 H 0.071 0.929 10 C -0.171 4.171 11 C -0.002 4.002 12 C -0.567 4.567 13 H 0.078 0.922 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.783 3.217 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.035 4.035 21 C -0.176 4.176 22 C -0.072 4.072 23 N -0.227 5.227 24 C -0.070 4.070 25 C -0.193 4.193 26 H 0.109 0.891 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.162 0.838 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.070 0.930 40 H 0.160 0.840 41 H 0.187 0.813 42 H 0.191 0.809 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.199 14.312 -12.798 21.289 hybrid contribution -1.881 -1.674 0.316 2.538 sum 7.318 12.638 -12.482 19.211 Atomic orbital electron populations 1.23928 0.96193 1.02199 1.01095 1.22886 0.96122 0.98591 0.99810 1.21396 0.98324 0.95401 0.99355 1.20423 0.94293 0.94996 0.88168 0.89377 1.60545 1.27598 1.11445 1.30696 1.22072 0.98445 0.89318 0.95967 1.20980 0.96874 0.96789 0.94398 0.92874 1.21489 0.97940 1.00061 0.97561 1.18970 0.94176 0.92359 0.94677 1.21623 1.29366 0.93249 1.12442 0.92242 1.25914 0.98221 0.95273 1.00411 1.70091 1.46466 0.98686 1.42333 0.85613 0.79290 0.77121 0.79719 1.19202 1.21085 1.19385 1.20291 0.94216 0.94863 0.94144 1.22074 1.02238 0.92844 1.00400 1.23067 0.89494 0.99436 0.95183 1.67669 1.14320 1.29504 1.11242 1.23089 1.00686 0.87577 0.95652 1.22243 0.94481 1.00962 1.01576 0.89149 0.87726 0.87687 0.90517 0.89273 0.83757 0.92691 0.93925 0.91582 0.94651 0.94996 0.99422 0.99516 0.93001 0.84028 0.81280 0.80865 0.83162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.52 13.83 67.78 0.94 -3.58 16 2 C -0.16 -3.36 6.65 25.64 0.17 -3.19 16 3 C -0.11 -1.89 5.11 29.84 0.15 -1.74 16 4 C 0.13 2.65 2.46 44.17 0.11 2.76 16 5 H 0.09 1.85 7.70 -2.39 -0.02 1.83 16 6 N -0.67 -16.60 5.17 -495.44 -2.56 -19.16 16 7 C 0.07 2.25 4.65 86.30 0.40 2.65 16 8 C -0.07 -2.83 2.48 -10.79 -0.03 -2.85 16 9 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 10 C -0.11 -4.29 8.89 71.98 0.64 -3.65 16 11 C 0.04 1.85 4.45 29.85 0.13 1.99 16 12 C -0.53 -29.72 8.41 25.60 0.22 -29.50 16 13 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16 14 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 15 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 16 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 C -0.03 -0.52 4.98 -19.67 -0.10 -0.61 16 21 C -0.16 -2.99 9.43 22.36 0.21 -2.78 16 22 C 0.08 1.66 11.18 84.68 0.95 2.60 16 23 N -0.52 -11.48 10.36 -195.84 -2.03 -13.51 16 24 C 0.09 1.60 11.18 84.68 0.95 2.55 16 25 C -0.17 -3.06 9.78 22.36 0.22 -2.84 16 26 H 0.09 2.22 8.06 -2.91 -0.02 2.20 16 27 H 0.10 2.13 7.84 -2.91 -0.02 2.11 16 28 H 0.11 2.36 8.04 -2.91 -0.02 2.33 16 29 H 0.08 1.30 7.69 -2.39 -0.02 1.28 16 30 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.34 7.95 7.86 -89.70 -0.70 7.24 16 32 H 0.05 1.85 8.06 -2.38 -0.02 1.83 16 33 H 0.04 1.37 4.79 -2.39 -0.01 1.36 16 34 H 0.07 2.17 7.75 -2.39 -0.02 2.15 16 35 H 0.03 1.44 6.95 -2.39 -0.02 1.42 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.14 2.40 7.39 -2.91 -0.02 2.38 16 41 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 42 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 43 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -65.48 350.97 3.41 -62.07 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.26 Total: 18.67 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 5.42 Total: -37.80 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -4.30 Total: -89.35 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -65.48 3.41 -62.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877046082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.722 kcal (2) G-P(sol) polarization free energy of solvation -65.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds