Wall clock time and date at job start Mon Mar 30 2020 01:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47166 * 2 1 4 4 C 1.50697 * 109.47188 * 119.99960 * 2 1 3 5 5 H 1.07998 * 119.99686 * 120.00033 * 4 2 1 6 6 C 1.37873 * 120.00012 * 300.00019 * 4 2 1 7 7 N 1.31512 * 120.00449 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99697 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47146 * 60.00323 * 8 6 4 10 10 H 1.48506 * 109.46916 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47382 * 300.00004 * 8 6 4 12 12 N 1.46895 * 109.47042 * 240.00155 * 2 1 3 13 13 C 1.46903 * 111.00108 * 183.94996 * 12 2 1 14 14 C 1.46900 * 111.00146 * 60.00076 * 12 2 1 15 15 C 1.50706 * 109.47394 * 190.89870 * 14 12 2 16 16 N 1.31694 * 119.49157 * 263.52895 * 15 14 12 17 17 C 1.31861 * 121.64798 * 180.02562 * 16 15 14 18 18 C 1.38098 * 120.58340 * 0.14039 * 17 16 15 19 19 C 1.39027 * 119.32620 * 359.90419 * 18 17 16 20 20 C 1.37889 * 118.49337 * 359.61086 * 19 18 17 21 21 C 1.50457 * 122.51789 * 180.28540 * 20 19 18 22 22 C 1.52810 * 110.53046 * 342.66100 * 21 20 19 23 23 C 1.53311 * 108.51303 * 50.90324 * 22 21 20 24 24 C 1.50347 * 118.69951 * 179.71726 * 19 18 17 25 25 H 1.09002 * 109.47166 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47090 * 299.99846 * 1 2 3 27 27 H 1.09004 * 109.47346 * 59.99753 * 1 2 3 28 28 H 0.96999 * 120.00456 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46760 * 58.99966 * 13 12 2 30 30 H 1.08994 * 109.47340 * 298.99969 * 13 12 2 31 31 H 1.08997 * 109.47168 * 178.99674 * 13 12 2 32 32 H 1.09000 * 109.47095 * 310.89570 * 14 12 2 33 33 H 1.09000 * 109.47262 * 70.89995 * 14 12 2 34 34 H 1.08000 * 119.70748 * 180.11861 * 17 16 15 35 35 H 1.08000 * 120.33282 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.45151 * 222.22451 * 21 20 19 37 37 H 1.08992 * 108.93367 * 102.76766 * 21 20 19 38 38 H 1.09001 * 109.63161 * 291.19720 * 22 21 20 39 39 H 1.08999 * 109.62974 * 170.60778 * 22 21 20 40 40 H 1.08997 * 109.63511 * 170.49745 * 23 22 21 41 41 H 1.09001 * 109.80328 * 49.98401 * 23 22 21 42 42 H 1.08998 * 109.30598 * 282.87255 * 24 19 18 43 43 H 1.08998 * 109.30308 * 42.26546 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8260 -0.4207 5.2204 11 1 1.8259 -2.5202 4.0076 12 7 2.0196 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1871 14 6 1.5486 -0.0263 -2.4211 15 6 1.8381 -0.9009 -3.6137 16 7 2.9265 -0.6890 -4.3242 17 6 3.2210 -1.4280 -5.3758 18 6 2.3860 -2.4552 -5.7689 19 6 1.2276 -2.7069 -5.0425 20 6 0.9569 -1.9205 -3.9427 21 6 -0.2663 -2.1173 -3.0890 22 6 -1.3084 -2.9536 -3.8304 23 6 -0.6281 -4.2212 -4.3601 24 6 0.3253 -3.8245 -5.4867 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.7088 1.1612 3.4844 29 1 3.8040 -1.3377 -0.2975 30 1 3.9188 0.2054 -1.1772 31 1 3.8197 -1.3268 -2.0774 32 1 0.4749 0.1468 -2.3496 33 1 2.0636 0.9274 -2.5365 34 1 4.1231 -1.2279 -5.9349 35 1 2.6309 -3.0577 -6.6311 36 1 -0.6947 -1.1466 -2.8393 37 1 0.0215 -2.6308 -2.1717 38 1 -1.7130 -2.3795 -4.6641 39 1 -2.1119 -3.2276 -3.1467 40 1 -1.3821 -4.9087 -4.7434 41 1 -0.0676 -4.7021 -3.5583 42 1 -0.2537 -3.4984 -6.3507 43 1 0.9307 -4.6865 -5.7669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891935267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:55 Heat of formation + Delta-G solvation = 25.874650 kcal Electronic energy + Delta-G solvation = -21883.960198 eV Core-core repulsion = 18928.327100 eV Total energy + Delta-G solvation = -2955.633097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.59481 -37.06687 -36.57941 -33.38152 -32.20212 -31.03137 -29.64506 -28.80148 -27.06695 -24.77627 -23.94503 -23.33197 -23.07410 -20.94326 -19.55354 -19.16857 -16.78359 -16.35663 -15.71069 -15.41380 -15.05531 -14.46303 -14.03462 -14.01982 -13.84450 -13.71860 -13.23436 -12.98118 -12.48213 -12.42633 -12.27745 -11.91139 -11.77586 -11.61337 -11.10899 -10.98769 -10.87725 -10.74814 -10.69737 -10.62824 -10.32715 -10.08675 -10.00881 -9.82898 -9.14126 -9.06625 -8.86558 -8.50011 -8.35349 -7.14995 -5.99418 -4.03607 1.36933 1.51397 3.33576 3.37691 3.40780 3.97736 4.43091 4.59503 4.62296 4.71044 4.91180 5.06204 5.13073 5.23135 5.29159 5.33994 5.38247 5.49052 5.62646 5.71179 5.77706 5.80883 5.89348 5.99153 6.09764 6.15891 6.23760 6.29738 6.36654 6.44106 6.49010 6.57118 6.66373 6.82591 6.88623 7.03601 7.05136 7.15807 7.53444 7.72139 7.84682 8.19438 8.32122 8.36715 8.60791 9.02521 9.61170 11.07371 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.005085 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.113135 B = 5505.086472 C = 6026.797167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.213 3.787 3 H -0.001 1.001 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.527 5.527 13 C 0.042 3.958 14 C 0.092 3.908 15 C 0.152 3.848 16 N -0.483 5.483 17 C 0.086 3.914 18 C -0.186 4.186 19 C -0.044 4.044 20 C -0.101 4.101 21 C -0.077 4.077 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.079 4.079 25 H 0.036 0.964 26 H 0.085 0.915 27 H 0.007 0.993 28 H 0.261 0.739 29 H 0.072 0.928 30 H 0.013 0.987 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 -7.307 -15.776 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.107 3.893 3 H 0.017 0.983 4 C -0.540 4.540 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.252 5.252 13 C -0.106 4.106 14 C -0.037 4.037 15 C 0.013 3.987 16 N -0.192 5.192 17 C -0.069 4.069 18 C -0.206 4.206 19 C -0.052 4.052 20 C -0.103 4.103 21 C -0.114 4.114 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.116 4.116 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.165 0.835 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.127 -6.975 -15.373 17.015 hybrid contribution 0.313 -0.273 0.478 0.633 sum -1.814 -7.248 -14.895 16.664 Atomic orbital electron populations 1.21877 0.97720 0.99654 0.99850 1.19263 0.92291 0.92109 0.85647 0.98338 1.21093 1.31003 1.12260 0.89668 0.91953 1.24910 0.95225 0.95076 0.98937 1.69875 1.36907 1.23016 1.23484 0.86594 0.79098 0.79736 0.82159 1.20384 1.21383 1.20269 1.62151 1.09753 1.52180 1.01150 1.22167 0.88383 0.99189 1.00895 1.21082 1.01347 0.93570 0.87666 1.21404 0.89040 0.93670 0.94634 1.67493 1.17863 1.27939 1.05943 1.22555 0.98773 0.92035 0.93572 1.21983 0.96204 1.00636 1.01753 1.19817 0.95121 0.96127 0.94153 1.20300 0.98470 0.95757 0.95786 1.20464 0.91658 1.01249 0.98025 1.21589 0.97950 0.96193 1.00003 1.21564 0.98259 0.97786 0.98158 1.20426 0.96700 0.95777 0.98654 0.94527 0.89602 0.97377 0.92955 0.90902 0.96860 0.93829 0.89029 0.94288 0.83467 0.85605 0.90225 0.88820 0.92126 0.91254 0.91651 0.91316 0.90599 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.77 37.16 0.33 -2.81 16 2 C 0.21 5.34 2.06 -68.87 -0.14 5.20 16 3 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 4 C -0.50 -13.66 7.92 -34.44 -0.27 -13.93 16 5 H 0.06 1.70 6.40 -52.49 -0.34 1.37 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.53 -11.54 4.61 -237.73 -1.10 -12.64 16 13 C 0.04 0.91 9.07 60.07 0.54 1.45 16 14 C 0.09 1.78 4.46 -4.97 -0.02 1.76 16 15 C 0.15 2.68 5.40 -82.47 -0.45 2.24 16 16 N -0.48 -8.38 9.59 -9.41 -0.09 -8.47 16 17 C 0.09 1.21 11.19 -17.59 -0.20 1.02 16 18 C -0.19 -2.32 9.74 -39.34 -0.38 -2.70 16 19 C -0.04 -0.59 5.74 -104.63 -0.60 -1.19 16 20 C -0.10 -1.57 5.74 -104.69 -0.60 -2.17 16 21 C -0.08 -1.11 5.05 -28.10 -0.14 -1.25 16 22 C -0.12 -1.36 5.97 -26.67 -0.16 -1.51 16 23 C -0.12 -1.23 5.97 -26.66 -0.16 -1.39 16 24 C -0.08 -0.80 5.72 -28.14 -0.16 -0.96 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 27 H 0.01 0.16 6.18 -51.93 -0.32 -0.16 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.07 1.63 6.20 -51.93 -0.32 1.31 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.88 6.71 -51.93 -0.35 0.53 16 32 H 0.09 1.70 3.91 -51.93 -0.20 1.50 16 33 H 0.04 0.79 8.11 -51.93 -0.42 0.37 16 34 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.08 1.19 6.39 -51.93 -0.33 0.86 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.78 8.11 -51.93 -0.42 0.35 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -29.18 330.19 -9.91 -39.10 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.80 Total: 0.12 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.51 Total: -14.73 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.56 Total: -45.77 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.18 -9.91 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891935267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.970 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds