Wall clock time and date at job start Mon Mar 30 2020 01:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47166 * 2 1 4 4 C 1.50697 * 109.47188 * 119.99960 * 2 1 3 5 5 H 1.07998 * 119.99686 * 120.00033 * 4 2 1 6 6 C 1.37873 * 120.00012 * 300.00019 * 4 2 1 7 7 N 1.31512 * 120.00449 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99697 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47146 * 60.00323 * 8 6 4 10 10 H 1.48506 * 109.46916 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47382 * 300.00004 * 8 6 4 12 12 N 1.46895 * 109.47042 * 240.00155 * 2 1 3 13 13 C 1.46903 * 111.00108 * 183.94996 * 12 2 1 14 14 C 1.46900 * 111.00146 * 60.00076 * 12 2 1 15 15 C 1.50706 * 109.47394 * 190.89870 * 14 12 2 16 16 N 1.31694 * 119.49157 * 263.52895 * 15 14 12 17 17 C 1.31861 * 121.64798 * 180.02562 * 16 15 14 18 18 C 1.38098 * 120.58340 * 0.14039 * 17 16 15 19 19 C 1.39027 * 119.32620 * 359.90419 * 18 17 16 20 20 C 1.37889 * 118.49337 * 359.61086 * 19 18 17 21 21 C 1.50457 * 122.51789 * 180.28540 * 20 19 18 22 22 C 1.52810 * 110.53046 * 342.66100 * 21 20 19 23 23 C 1.53311 * 108.51303 * 50.90324 * 22 21 20 24 24 C 1.50347 * 118.69951 * 179.71726 * 19 18 17 25 25 H 1.09002 * 109.47166 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47090 * 299.99846 * 1 2 3 27 27 H 1.09004 * 109.47346 * 59.99753 * 1 2 3 28 28 H 0.96999 * 120.00456 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46760 * 58.99966 * 13 12 2 30 30 H 1.08994 * 109.47340 * 298.99969 * 13 12 2 31 31 H 1.08997 * 109.47168 * 178.99674 * 13 12 2 32 32 H 1.09000 * 109.47095 * 310.89570 * 14 12 2 33 33 H 1.09000 * 109.47262 * 70.89995 * 14 12 2 34 34 H 1.08000 * 119.70748 * 180.11861 * 17 16 15 35 35 H 1.08000 * 120.33282 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.45151 * 222.22451 * 21 20 19 37 37 H 1.08992 * 108.93367 * 102.76766 * 21 20 19 38 38 H 1.09001 * 109.63161 * 291.19720 * 22 21 20 39 39 H 1.08999 * 109.62974 * 170.60778 * 22 21 20 40 40 H 1.08997 * 109.63511 * 170.49745 * 23 22 21 41 41 H 1.09001 * 109.80328 * 49.98401 * 23 22 21 42 42 H 1.08998 * 109.30598 * 282.87255 * 24 19 18 43 43 H 1.08998 * 109.30308 * 42.26546 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8260 -0.4207 5.2204 11 1 1.8259 -2.5202 4.0076 12 7 2.0196 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1871 14 6 1.5486 -0.0263 -2.4211 15 6 1.8381 -0.9009 -3.6137 16 7 2.9265 -0.6890 -4.3242 17 6 3.2210 -1.4280 -5.3758 18 6 2.3860 -2.4552 -5.7689 19 6 1.2276 -2.7069 -5.0425 20 6 0.9569 -1.9205 -3.9427 21 6 -0.2663 -2.1173 -3.0890 22 6 -1.3084 -2.9536 -3.8304 23 6 -0.6281 -4.2212 -4.3601 24 6 0.3253 -3.8245 -5.4867 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.7088 1.1612 3.4844 29 1 3.8040 -1.3377 -0.2975 30 1 3.9188 0.2054 -1.1772 31 1 3.8197 -1.3268 -2.0774 32 1 0.4749 0.1468 -2.3496 33 1 2.0636 0.9274 -2.5365 34 1 4.1231 -1.2279 -5.9349 35 1 2.6309 -3.0577 -6.6311 36 1 -0.6947 -1.1466 -2.8393 37 1 0.0215 -2.6308 -2.1717 38 1 -1.7130 -2.3795 -4.6641 39 1 -2.1119 -3.2276 -3.1467 40 1 -1.3821 -4.9087 -4.7434 41 1 -0.0676 -4.7021 -3.5583 42 1 -0.2537 -3.4984 -6.3507 43 1 0.9307 -4.6865 -5.7669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891935267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:54 Heat of formation + Delta-G solvation = 9.183314 kcal Electronic energy + Delta-G solvation = -21884.683988 eV Core-core repulsion = 18928.327100 eV Total energy + Delta-G solvation = -2956.356888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72926 -38.73291 -37.66678 -35.10418 -33.70416 -32.08365 -31.26728 -30.21467 -28.66153 -26.70386 -25.31927 -24.71750 -24.07991 -22.34402 -21.14506 -20.33859 -18.38543 -17.95139 -17.19890 -16.68069 -16.34275 -16.02200 -15.70844 -15.37614 -14.96743 -14.70301 -14.67156 -14.33191 -14.12971 -13.92852 -13.42642 -13.32988 -13.01144 -12.95483 -12.86866 -12.76012 -12.59959 -12.42203 -12.09152 -11.98668 -11.81665 -11.71654 -11.68690 -11.23215 -10.91905 -10.52024 -10.19959 -10.16395 -9.64486 -9.00052 -8.10627 -6.22461 0.22721 0.42870 1.42805 1.44262 1.51925 2.42233 2.79654 3.17670 3.32894 3.66111 3.66491 3.74431 4.01831 4.07636 4.10177 4.28621 4.38963 4.43342 4.50408 4.58707 4.64869 4.70614 4.74843 4.83499 4.84888 4.92707 4.94908 5.02290 5.03824 5.04831 5.16284 5.20955 5.21296 5.30786 5.41183 5.50159 5.50849 5.59512 5.71599 5.76683 5.93531 6.24322 6.33632 6.66307 6.90060 7.17712 7.46232 8.95208 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.005085 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.113135 B = 5505.086472 C = 6026.797167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.217 3.783 3 H -0.041 1.041 4 C -0.519 4.519 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.525 5.525 13 C 0.053 3.947 14 C 0.099 3.901 15 C 0.123 3.877 16 N -0.515 5.515 17 C 0.076 3.924 18 C -0.172 4.172 19 C -0.046 4.046 20 C -0.113 4.113 21 C -0.074 4.074 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.076 4.076 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.060 0.940 30 H 0.001 0.999 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.020 0.980 34 H 0.176 0.824 35 H 0.167 0.833 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 -9.664 -17.878 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.110 3.890 3 H -0.023 1.023 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.249 5.249 13 C -0.095 4.095 14 C -0.029 4.029 15 C -0.015 4.015 16 N -0.225 5.225 17 C -0.080 4.080 18 C -0.191 4.191 19 C -0.054 4.054 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.113 4.113 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.020 0.980 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.038 0.962 34 H 0.193 0.807 35 H 0.184 0.816 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.358 -9.336 -17.486 19.962 hybrid contribution 0.422 0.466 1.008 1.188 sum -1.935 -8.870 -16.478 18.813 Atomic orbital electron populations 1.21649 0.96618 0.99602 0.99681 1.19088 0.93113 0.89982 0.86771 1.02335 1.21334 1.31261 1.12296 0.90838 0.92470 1.25673 0.95326 0.95735 1.01751 1.70006 1.37620 1.24083 1.24134 0.85595 0.78573 0.78774 0.78573 1.19991 1.20826 1.19579 1.62093 1.09843 1.51800 1.01202 1.22038 0.88239 0.98423 1.00820 1.20980 1.01021 0.93221 0.87661 1.21063 0.90658 0.94989 0.94762 1.67389 1.18156 1.29528 1.07445 1.23112 1.00046 0.92021 0.92788 1.22421 0.94885 0.99731 1.02101 1.20278 0.95901 0.96222 0.92987 1.20412 0.98340 0.95813 0.96995 1.20390 0.92480 1.00889 0.97403 1.21580 0.97124 0.96455 1.00144 1.21572 0.98773 0.97360 0.97905 1.20534 0.96542 0.95191 0.99015 0.94340 0.92036 0.95181 0.92881 0.92090 0.98007 0.92518 0.88838 0.96173 0.80713 0.81565 0.91580 0.91537 0.91047 0.90631 0.88978 0.92794 0.88448 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.77 71.98 0.63 -5.11 16 2 C 0.22 11.41 2.06 44.17 0.09 11.50 16 3 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 16 4 C -0.52 -29.11 7.92 25.60 0.20 -28.91 16 5 H 0.06 3.21 6.40 -2.91 -0.02 3.19 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -53.29 11.32 21.45 0.24 -53.04 16 8 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 N -0.52 -23.96 4.61 -906.04 -4.17 -28.14 16 13 C 0.05 2.39 9.07 127.69 1.16 3.54 16 14 C 0.10 4.03 4.46 85.56 0.38 4.41 16 15 C 0.12 4.41 5.40 42.70 0.23 4.64 16 16 N -0.52 -17.71 9.59 -183.69 -1.76 -19.47 16 17 C 0.08 1.96 11.19 84.66 0.95 2.91 16 18 C -0.17 -3.65 9.74 22.43 0.22 -3.43 16 19 C -0.05 -1.09 5.74 -19.87 -0.11 -1.21 16 20 C -0.11 -3.44 5.74 -19.91 -0.11 -3.55 16 21 C -0.07 -2.15 5.05 29.71 0.15 -2.00 16 22 C -0.12 -2.40 5.97 30.64 0.18 -2.21 16 23 C -0.12 -2.05 5.97 30.64 0.18 -1.87 16 24 C -0.08 -1.22 5.72 29.68 0.17 -1.05 16 25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 27 H 0.03 1.29 6.18 -2.39 -0.01 1.27 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.06 2.82 6.20 -2.38 -0.01 2.81 16 30 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.06 2.36 6.71 -2.39 -0.02 2.34 16 32 H 0.09 3.64 3.91 -2.39 -0.01 3.63 16 33 H 0.02 0.87 8.11 -2.39 -0.02 0.85 16 34 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.07 2.03 6.39 -2.39 -0.02 2.01 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.10 8.11 -2.39 -0.02 1.08 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -65.20 330.19 2.09 -63.12 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.99 Total: 12.45 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 4.77 Total: -21.12 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -5.69 Total: -100.65 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -65.20 2.09 -63.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891935267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.299 kcal (2) G-P(sol) polarization free energy of solvation -65.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds