Wall clock time and date at job start Mon Mar 30 2020 01:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.70936 * 125.57269 * 2 1 4 4 C 1.70772 * 91.15478 * 180.20957 * 3 2 1 5 5 Cl 1.73601 * 124.71207 * 179.79427 * 4 3 2 6 6 N 1.28749 * 110.56993 * 359.83422 * 4 3 2 7 7 C 1.33685 * 115.72088 * 359.97438 * 6 4 3 8 8 C 1.47097 * 123.15040 * 179.97438 * 7 6 4 9 9 O 1.21565 * 119.99678 * 180.02562 * 8 7 6 10 10 O 1.34798 * 119.99961 * 0.02854 * 8 7 6 11 11 C 1.45200 * 117.00044 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47147 * 29.99689 * 11 10 8 13 13 C 1.52997 * 109.47228 * 269.99587 * 11 10 8 14 14 C 1.50706 * 109.46958 * 149.99245 * 11 10 8 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 11 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 H 1.08999 * 109.47629 * 270.08260 * 1 2 3 23 23 H 1.09003 * 109.47214 * 30.08807 * 1 2 3 24 24 H 1.09001 * 109.47091 * 150.08315 * 1 2 3 25 25 H 1.09000 * 109.47140 * 300.00106 * 13 11 10 26 26 H 1.09002 * 109.47045 * 60.00013 * 13 11 10 27 27 H 1.09001 * 109.46922 * 179.97438 * 13 11 10 28 28 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5013 1.3904 0.0000 4 6 3.9101 0.4251 -0.0062 5 17 5.5322 1.0436 -0.0149 6 7 3.6019 -0.8250 -0.0045 7 6 2.2937 -1.1000 0.0021 8 6 1.7599 -2.4707 0.0045 9 8 0.5583 -2.6550 0.0101 10 8 2.6032 -3.5224 0.0004 11 6 2.0062 -4.8460 0.0037 12 1 1.0429 -4.8114 -0.5053 13 6 1.8038 -5.3107 1.4472 14 6 2.9177 -5.8099 -0.7114 15 1 3.8524 -5.4625 -1.1263 16 6 2.5588 -7.1354 -0.8348 17 7 3.3545 -7.9766 -1.4583 18 14 0.9426 -7.7363 -0.1165 19 1 1.1584 -8.1826 1.2832 20 1 -0.0492 -6.6311 -0.1364 21 1 0.4335 -8.8728 -0.9255 22 1 -0.3634 0.0015 1.0276 23 1 -0.3634 0.8892 -0.5152 24 1 -0.3633 -0.8907 -0.5125 25 1 2.7671 -5.3453 1.9562 26 1 1.1446 -4.6135 1.9643 27 1 1.3553 -6.3041 1.4496 28 1 3.1022 -8.9093 -1.5449 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892691178.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:09 Heat of formation + Delta-G solvation = -41.269392 kcal Electronic energy + Delta-G solvation = -16654.376329 eV Core-core repulsion = 13630.933723 eV Total energy + Delta-G solvation = -3023.442606 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61765 -39.00183 -37.13919 -36.06704 -33.21065 -32.71724 -30.69977 -28.06324 -25.29249 -24.82921 -23.39776 -21.01614 -19.49295 -18.86059 -17.01573 -16.55750 -16.12739 -15.94221 -15.66741 -14.82679 -14.44480 -13.73563 -13.40069 -13.14241 -12.95251 -12.73991 -12.32971 -12.06785 -11.92914 -11.73937 -11.64835 -11.52775 -10.89509 -10.27259 -10.18864 -9.97390 -9.81275 -9.71945 -9.62451 -9.13286 -9.04632 -8.68036 -6.21145 -4.23586 0.14360 0.41364 1.14207 1.61230 1.73262 3.18707 3.29430 3.30590 3.31813 3.36395 4.26759 4.29565 4.58526 4.88598 5.09181 5.36518 5.52159 5.58912 5.96814 6.14476 6.26247 6.38038 6.55455 6.96720 7.08094 7.28333 7.47479 8.16427 8.53071 8.87570 9.35053 10.91041 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.027141 B = 0.005008 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.385473 B = 5589.729328 C = 6384.963778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.179 4.179 3 S 0.264 5.736 4 C 0.042 3.958 5 Cl 0.031 6.969 6 N -0.398 5.398 7 C 0.036 3.964 8 C 0.536 3.464 9 O -0.507 6.507 10 O -0.315 6.315 11 C 0.189 3.811 12 H 0.048 0.952 13 C -0.170 4.170 14 C -0.524 4.524 15 H 0.089 0.911 16 C 0.080 3.920 17 N -0.887 5.887 18 Si 0.879 3.121 19 H -0.273 1.273 20 H -0.262 1.262 21 H -0.290 1.290 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.111 0.889 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 21.244 4.126 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.303 4.303 3 S 0.516 5.484 4 C -0.264 4.264 5 Cl 0.058 6.942 6 N -0.114 5.114 7 C -0.097 4.097 8 C 0.378 3.622 9 O -0.398 6.398 10 O -0.229 6.229 11 C 0.136 3.864 12 H 0.066 0.934 13 C -0.227 4.227 14 C -0.562 4.562 15 H 0.107 0.893 16 C -0.123 4.123 17 N -0.524 5.524 18 Si 0.708 3.292 19 H -0.200 1.200 20 H -0.187 1.187 21 H -0.217 1.217 22 H 0.106 0.894 23 H 0.093 0.907 24 H 0.130 0.870 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.158 21.613 4.057 22.216 hybrid contribution -0.720 -1.471 0.412 1.688 sum -3.878 20.142 4.470 20.993 Atomic orbital electron populations 1.20647 0.84717 1.05190 1.04308 1.25804 1.04068 0.95845 1.04578 1.82786 0.93298 1.06965 1.65331 1.26970 0.94956 0.93219 1.11228 1.98433 1.15245 1.83707 1.96786 1.66755 1.16904 1.16442 1.11313 1.19284 0.86442 0.93691 1.10241 1.19653 0.84601 0.84726 0.73259 1.90766 1.15728 1.85951 1.47345 1.86726 1.39244 1.16167 1.80731 1.21041 0.95997 0.75484 0.93897 0.93436 1.22533 1.01374 1.00087 0.98730 1.20780 1.07194 0.91947 1.36258 0.89343 1.24729 0.96904 0.95971 0.94740 1.69841 1.36729 1.04289 1.41574 0.86968 0.84472 0.78909 0.78807 1.19973 1.18686 1.21654 0.89372 0.90707 0.87047 0.91638 0.94390 0.92397 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.64 36.00 0.35 -0.61 15 2 C -0.18 -2.33 6.40 -35.38 -0.23 -2.56 15 3 S 0.26 2.56 22.93 -107.50 -2.47 0.10 15 4 C 0.04 0.56 7.98 51.47 0.41 0.97 15 5 Cl 0.03 0.35 29.33 -51.86 -1.52 -1.17 15 6 N -0.40 -6.96 10.61 -9.47 -0.10 -7.06 15 7 C 0.04 0.63 6.71 -84.53 -0.57 0.06 15 8 C 0.54 11.30 7.91 34.32 0.27 11.58 15 9 O -0.51 -10.75 13.36 -19.32 -0.26 -11.01 15 10 O -0.31 -7.71 9.80 -40.76 -0.40 -8.11 15 11 C 0.19 4.90 2.16 -27.88 -0.06 4.84 15 12 H 0.05 1.26 6.22 -51.93 -0.32 0.94 15 13 C -0.17 -3.94 9.03 37.16 0.34 -3.61 15 14 C -0.52 -15.41 9.48 -34.44 -0.33 -15.73 15 15 H 0.09 2.84 8.06 -52.49 -0.42 2.42 15 16 C 0.08 2.32 5.45 -17.82 -0.10 2.22 15 17 N -0.89 -27.05 13.96 55.43 0.77 -26.28 15 18 Si 0.88 21.71 24.37 -169.99 -4.14 17.57 15 19 H -0.27 -6.47 6.87 56.52 0.39 -6.08 15 20 H -0.26 -6.31 6.53 56.52 0.37 -5.94 15 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 22 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 15 24 H 0.11 1.46 6.00 -51.93 -0.31 1.15 15 25 H 0.06 1.47 8.14 -51.93 -0.42 1.05 15 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 27 H 0.06 1.35 3.27 -51.93 -0.17 1.18 15 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 15 LS Contribution 274.05 15.07 4.13 4.13 Total: -1.00 -32.42 274.05 -6.00 -38.42 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: -2.10 Total: -3.74 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 0.09 Total: -2.84 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.67 Total: -33.34 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.66 Total: -19.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.47 Total: 0.10 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.52 Total: -1.17 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.42 -6.00 -38.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892691178.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.850 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds