Wall clock time and date at job start Mon Mar 30 2020 01:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.70936 * 125.57269 * 2 1 4 4 C 1.70772 * 91.15478 * 180.20957 * 3 2 1 5 5 Cl 1.73601 * 124.71207 * 179.79427 * 4 3 2 6 6 N 1.28749 * 110.56993 * 359.83422 * 4 3 2 7 7 C 1.33685 * 115.72088 * 359.97438 * 6 4 3 8 8 C 1.47097 * 123.15040 * 179.97438 * 7 6 4 9 9 O 1.21565 * 119.99678 * 180.02562 * 8 7 6 10 10 O 1.34798 * 119.99961 * 0.02854 * 8 7 6 11 11 C 1.45200 * 117.00044 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47147 * 29.99689 * 11 10 8 13 13 C 1.52997 * 109.47228 * 269.99587 * 11 10 8 14 14 C 1.50706 * 109.46958 * 149.99245 * 11 10 8 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 11 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 H 1.08999 * 109.47629 * 270.08260 * 1 2 3 23 23 H 1.09003 * 109.47214 * 30.08807 * 1 2 3 24 24 H 1.09001 * 109.47091 * 150.08315 * 1 2 3 25 25 H 1.09000 * 109.47140 * 300.00106 * 13 11 10 26 26 H 1.09002 * 109.47045 * 60.00013 * 13 11 10 27 27 H 1.09001 * 109.46922 * 179.97438 * 13 11 10 28 28 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5013 1.3904 0.0000 4 6 3.9101 0.4251 -0.0062 5 17 5.5322 1.0436 -0.0149 6 7 3.6019 -0.8250 -0.0045 7 6 2.2937 -1.1000 0.0021 8 6 1.7599 -2.4707 0.0045 9 8 0.5583 -2.6550 0.0101 10 8 2.6032 -3.5224 0.0004 11 6 2.0062 -4.8460 0.0037 12 1 1.0429 -4.8114 -0.5053 13 6 1.8038 -5.3107 1.4472 14 6 2.9177 -5.8099 -0.7114 15 1 3.8524 -5.4625 -1.1263 16 6 2.5588 -7.1354 -0.8348 17 7 3.3545 -7.9766 -1.4583 18 14 0.9426 -7.7363 -0.1165 19 1 1.1584 -8.1826 1.2832 20 1 -0.0492 -6.6311 -0.1364 21 1 0.4335 -8.8728 -0.9255 22 1 -0.3634 0.0015 1.0276 23 1 -0.3634 0.8892 -0.5152 24 1 -0.3633 -0.8907 -0.5125 25 1 2.7671 -5.3453 1.9562 26 1 1.1446 -4.6135 1.9643 27 1 1.3553 -6.3041 1.4496 28 1 3.1022 -8.9093 -1.5449 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892691178.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:09 Heat of formation + Delta-G solvation = -64.140750 kcal Electronic energy + Delta-G solvation = -16655.368106 eV Core-core repulsion = 13630.933723 eV Total energy + Delta-G solvation = -3024.434382 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.96855 -40.46115 -38.12458 -37.74320 -35.32848 -33.75128 -32.74575 -29.22216 -27.38956 -25.89477 -24.81828 -22.78853 -21.02140 -19.99344 -18.99985 -18.20271 -17.51101 -17.40040 -17.07173 -16.42275 -16.04373 -15.08581 -14.64854 -14.59446 -14.34390 -14.24926 -13.93097 -13.75074 -13.42372 -13.01289 -12.87430 -12.77180 -12.59204 -12.25913 -11.79088 -11.68906 -11.46702 -11.27940 -11.02481 -10.85861 -10.63396 -10.07721 -8.46202 -6.56524 -0.88883 -0.50750 0.11819 0.43136 0.65140 1.23596 1.30628 1.41240 1.83744 1.88165 2.18949 2.85826 3.10739 3.59285 3.71404 4.12480 4.24326 4.37277 4.49637 4.61728 4.66578 4.72457 5.07017 5.20392 5.28961 5.53186 5.95029 6.13061 6.47033 6.75846 7.07700 8.70369 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.027141 B = 0.005008 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.385473 B = 5589.729328 C = 6384.963778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.174 4.174 3 S 0.407 5.593 4 C 0.014 3.986 5 Cl 0.040 6.960 6 N -0.450 5.450 7 C -0.008 4.008 8 C 0.530 3.470 9 O -0.516 6.516 10 O -0.341 6.341 11 C 0.192 3.808 12 H 0.040 0.960 13 C -0.163 4.163 14 C -0.544 4.544 15 H 0.038 0.962 16 C 0.028 3.972 17 N -0.931 5.931 18 Si 0.946 3.054 19 H -0.250 1.250 20 H -0.251 1.251 21 H -0.281 1.281 22 H 0.105 0.895 23 H 0.115 0.885 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 23.769 5.354 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.299 4.299 3 S 0.661 5.339 4 C -0.290 4.290 5 Cl 0.067 6.933 6 N -0.168 5.168 7 C -0.140 4.140 8 C 0.373 3.627 9 O -0.407 6.407 10 O -0.256 6.256 11 C 0.138 3.862 12 H 0.058 0.942 13 C -0.220 4.220 14 C -0.582 4.582 15 H 0.056 0.944 16 C -0.171 4.171 17 N -0.569 5.569 18 Si 0.770 3.230 19 H -0.175 1.175 20 H -0.175 1.175 21 H -0.207 1.207 22 H 0.123 0.877 23 H 0.134 0.866 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.317 24.176 5.291 25.313 hybrid contribution 0.026 -2.009 -0.047 2.010 sum -5.291 22.167 5.244 23.385 Atomic orbital electron populations 1.20797 0.82992 1.05886 1.05486 1.26335 1.05698 0.96623 1.01202 1.82298 0.88280 1.02024 1.61336 1.27362 0.96985 0.93540 1.11095 1.98434 1.15003 1.83101 1.96732 1.66628 1.17628 1.19198 1.13345 1.18880 0.87440 0.92513 1.15191 1.20279 0.84465 0.85395 0.72539 1.90735 1.15742 1.86355 1.47902 1.86704 1.40593 1.16484 1.81869 1.20753 0.94336 0.76027 0.95060 0.94229 1.22410 1.02007 1.00688 0.96877 1.20930 1.06274 0.93620 1.37363 0.94361 1.25654 1.01032 0.95708 0.94732 1.69977 1.39131 1.05022 1.42807 0.85893 0.79274 0.78687 0.79113 1.17478 1.17508 1.20714 0.87710 0.86641 0.89733 0.91698 0.91971 0.92068 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.64 71.23 0.69 -1.00 15 2 C -0.17 -4.10 6.40 24.99 0.16 -3.94 15 3 S 0.41 6.33 22.93 -56.49 -1.30 5.03 15 4 C 0.01 0.36 7.98 130.69 1.04 1.40 15 5 Cl 0.04 0.86 29.33 -2.72 -0.08 0.78 15 6 N -0.45 -15.88 10.61 -183.86 -1.95 -17.83 15 7 C -0.01 -0.29 6.71 40.50 0.27 -0.01 15 8 C 0.53 22.88 7.91 70.15 0.56 23.44 15 9 O -0.52 -22.03 13.36 19.63 0.26 -21.76 15 10 O -0.34 -17.50 9.80 -57.10 -0.56 -18.06 15 11 C 0.19 10.20 2.16 29.85 0.06 10.26 15 12 H 0.04 2.14 6.22 -2.39 -0.01 2.12 15 13 C -0.16 -7.45 9.03 71.98 0.65 -6.80 15 14 C -0.54 -33.60 9.48 25.60 0.24 -33.36 15 15 H 0.04 2.65 8.06 -2.91 -0.02 2.63 15 16 C 0.03 1.69 5.45 84.66 0.46 2.15 15 17 N -0.93 -58.57 13.96 21.45 0.30 -58.27 15 18 Si 0.95 44.56 24.37 68.60 1.67 46.23 15 19 H -0.25 -10.82 6.87 99.48 0.68 -10.13 15 20 H -0.25 -11.33 6.53 99.48 0.65 -10.68 15 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 15 22 H 0.10 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.12 1.15 8.14 -2.39 -0.02 1.13 15 24 H 0.08 2.09 6.00 -2.39 -0.01 2.08 15 25 H 0.06 2.93 8.14 -2.39 -0.02 2.91 15 26 H 0.06 2.50 8.14 -2.39 -0.02 2.49 15 27 H 0.06 2.73 3.27 -2.39 -0.01 2.72 15 28 H 0.28 15.92 8.31 -92.70 -0.77 15.15 15 Total: -1.00 -75.39 274.05 3.61 -71.78 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: 1.13 Total: -0.03 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.13 Total: -7.85 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -1.65 Total: -76.10 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.30 Total: -39.82 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.67 Total: 46.23 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -1.30 Total: 5.03 kcal Atomic # 17 Polarization: 0.86 SS G_CDS: -0.08 Total: 0.78 kcal Total: -75.39 3.61 -71.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892691178.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.634 kcal (2) G-P(sol) polarization free energy of solvation -75.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds