Wall clock time and date at job start Mon Mar 30 2020 01:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47503 * 2 1 4 4 C 1.53001 * 109.47000 * 119.99863 * 2 1 3 5 5 C 1.50697 * 109.47183 * 295.00451 * 4 2 1 6 6 H 1.07996 * 119.99805 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00007 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99546 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99816 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47431 * 89.99716 * 9 7 5 11 11 H 1.48501 * 109.47097 * 209.99626 * 9 7 5 12 12 H 1.48495 * 109.47362 * 329.99640 * 9 7 5 13 13 C 1.53002 * 109.47287 * 239.99896 * 2 1 3 14 14 N 1.46902 * 109.47090 * 64.99962 * 13 2 1 15 15 C 1.46893 * 110.99717 * 179.97438 * 14 13 2 16 16 H 1.08998 * 109.47342 * 35.00832 * 15 14 13 17 17 C 1.50704 * 109.46888 * 155.00425 * 15 14 13 18 18 C 1.38653 * 120.78770 * 39.71815 * 17 15 14 19 19 C 1.38211 * 119.16033 * 179.80164 * 18 17 15 20 20 N 1.31872 * 120.75976 * 0.48687 * 19 18 17 21 21 C 1.31864 * 121.73235 * 359.74209 * 20 19 18 22 22 C 1.38207 * 120.76399 * 0.02562 * 21 20 19 23 23 C 1.53003 * 109.47529 * 275.00078 * 15 14 13 24 24 C 1.53000 * 117.49792 * 180.02562 * 23 15 14 25 25 C 1.53002 * 60.02940 * 107.48056 * 24 23 15 26 26 H 1.09000 * 109.47503 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47390 * 300.00361 * 1 2 3 28 28 H 1.09003 * 109.46789 * 60.00148 * 1 2 3 29 29 H 1.09006 * 109.47021 * 55.00313 * 4 2 1 30 30 H 1.08997 * 109.47301 * 174.99701 * 4 2 1 31 31 H 0.97002 * 119.99140 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47043 * 305.00099 * 13 2 1 33 33 H 1.08996 * 109.46801 * 185.00384 * 13 2 1 34 34 H 1.00905 * 110.99403 * 56.04588 * 14 13 2 35 35 H 1.07993 * 120.42168 * 0.02562 * 18 17 15 36 36 H 1.07993 * 119.61976 * 180.20477 * 19 18 17 37 37 H 1.08003 * 119.61969 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.42266 * 179.97438 * 22 21 20 39 39 H 1.08999 * 115.55832 * 34.31818 * 23 15 14 40 40 H 1.09002 * 117.49833 * 214.98161 * 24 23 15 41 41 H 1.09002 * 117.49953 * 359.97438 * 24 23 15 42 42 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 43 43 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0805 0.9745 2.3756 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5188 3.8511 9 14 1.4994 0.5633 5.2496 10 1 0.1722 0.0953 5.7237 11 1 2.5090 0.3535 6.3182 12 1 1.4244 2.0085 4.9163 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1258 -0.6266 -3.6671 16 1 2.0824 -1.7075 -3.5334 17 6 1.2506 -0.2285 -4.8275 18 6 0.7948 1.0744 -4.9584 19 6 -0.0027 1.4036 -6.0382 20 7 -0.3379 0.4932 -6.9314 21 6 0.0733 -0.7561 -6.8364 22 6 0.8772 -1.1578 -5.7864 23 6 3.5694 -0.2051 -3.9489 24 6 4.2478 -0.7929 -5.1880 25 6 3.8216 0.6765 -5.1746 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1262 -0.7995 1.2057 31 1 2.9235 -1.8417 4.7318 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.9882 0.9873 -2.3966 35 1 1.0625 1.8234 -4.2279 36 1 -0.3591 2.4170 -6.1492 37 1 -0.2223 -1.4739 -7.5873 38 1 1.2105 -2.1824 -5.7138 39 1 4.1895 -0.0333 -3.0691 40 1 5.3144 -1.0082 -5.1233 41 1 3.6659 -1.4802 -5.8020 42 1 4.6078 1.4280 -5.1012 43 1 2.9591 0.9559 -5.7796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898322683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:44 Heat of formation + Delta-G solvation = 44.315870 kcal Electronic energy + Delta-G solvation = -20825.339069 eV Core-core repulsion = 17870.505643 eV Total energy + Delta-G solvation = -2954.833426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63770 -38.28097 -36.24107 -33.93720 -32.55876 -31.48297 -31.22393 -27.31804 -26.45203 -24.67404 -23.64458 -22.92146 -22.35952 -22.24211 -20.21203 -19.17534 -16.84522 -16.43094 -16.24469 -16.18996 -15.70192 -15.05222 -14.59103 -14.28432 -14.03865 -13.83409 -13.63953 -13.60262 -12.76289 -12.44261 -12.06212 -12.02022 -11.73171 -11.60513 -11.54651 -11.41971 -10.87995 -10.82770 -10.55800 -10.31598 -10.30512 -10.23934 -9.73516 -9.61673 -9.56266 -9.19298 -9.15599 -8.97014 -8.34313 -8.23125 -5.99173 -4.00277 1.06532 1.19233 3.32129 3.38515 3.41566 3.54033 3.72542 4.26086 4.37624 4.46548 4.48080 4.60789 4.72706 4.82826 4.89624 5.03827 5.10969 5.34874 5.36668 5.41372 5.45611 5.53235 5.67159 5.69096 5.72474 5.81213 5.87033 5.94198 6.05832 6.12362 6.26038 6.38524 6.51758 6.62351 6.65070 6.97217 7.14871 7.16298 7.27560 7.53789 7.67412 7.82858 7.88905 8.00900 8.44790 9.06084 9.63239 11.12358 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.027658 B = 0.003472 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.130661 B = 8062.828137 C = 8558.589829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.674 5.674 15 C 0.151 3.849 16 H 0.092 0.908 17 C -0.012 4.012 18 C -0.147 4.147 19 C 0.092 3.908 20 N -0.492 5.492 21 C 0.095 3.905 22 C -0.173 4.173 23 C -0.180 4.180 24 C -0.174 4.174 25 C -0.180 4.180 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.341 0.659 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 2.357 -20.661 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.304 5.304 15 C 0.041 3.959 16 H 0.110 0.890 17 C -0.020 4.020 18 C -0.167 4.167 19 C -0.065 4.065 20 N -0.201 5.201 21 C -0.062 4.062 22 C -0.193 4.193 23 C -0.200 4.200 24 C -0.211 4.211 25 C -0.217 4.217 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.149 0.851 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.013 2.206 -21.232 21.370 hybrid contribution 1.364 0.324 1.785 2.270 sum 0.351 2.530 -19.447 19.614 Atomic orbital electron populations 1.21589 0.95693 1.00590 1.00150 1.21200 0.96007 0.98908 0.93957 0.92812 1.19116 0.95880 0.95578 0.90410 1.21232 1.34597 1.08307 0.90982 0.92572 1.25022 0.95307 0.95113 0.99110 1.69968 1.39061 1.21270 1.23374 0.86629 0.78237 0.80430 0.82923 1.20703 1.21323 1.19907 1.22210 0.97449 0.97641 0.89113 1.60671 1.63055 1.05855 1.00778 1.20065 0.87991 0.99335 0.88537 0.89028 1.20179 0.94321 0.93339 0.94194 1.21945 0.98768 0.97070 0.98920 1.22736 0.94571 0.98840 0.90313 1.67638 1.21983 1.02254 1.28267 1.22654 0.94061 0.92928 0.96573 1.22007 1.00608 1.00559 0.96132 1.23169 0.97682 1.05719 0.93466 1.22889 1.00813 0.96552 1.00895 1.23143 1.03565 0.93756 1.01194 0.94181 0.92766 0.93973 0.96571 0.96942 0.93098 0.91436 0.95421 0.84074 0.84748 0.83031 0.83109 0.85143 0.87090 0.88851 0.88813 0.89001 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.08 -1.61 2.48 -90.62 -0.22 -1.84 16 3 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.23 8.41 -34.44 -0.29 -14.52 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.06 1.04 4.87 -3.82 -0.02 1.02 16 14 N -0.67 -8.93 5.18 -107.95 -0.56 -9.49 16 15 C 0.15 1.71 2.62 -68.86 -0.18 1.53 16 16 H 0.09 1.08 7.70 -51.93 -0.40 0.68 16 17 C -0.01 -0.13 3.41 -104.31 -0.36 -0.48 16 18 C -0.15 -1.55 7.71 -39.44 -0.30 -1.86 16 19 C 0.09 0.97 11.18 -17.54 -0.20 0.78 16 20 N -0.49 -5.79 10.36 -13.25 -0.14 -5.93 16 21 C 0.09 0.97 11.18 -17.55 -0.20 0.77 16 22 C -0.17 -1.73 9.38 -39.44 -0.37 -2.10 16 23 C -0.18 -1.87 5.59 -90.58 -0.51 -2.38 16 24 C -0.17 -1.60 10.01 -26.73 -0.27 -1.87 16 25 C -0.18 -1.70 9.51 -26.69 -0.25 -1.95 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 28 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.07 1.13 8.06 -51.93 -0.42 0.72 16 33 H 0.03 0.45 7.63 -51.93 -0.40 0.05 16 34 H 0.34 4.29 7.92 -39.29 -0.31 3.98 16 35 H 0.13 1.32 7.37 -52.49 -0.39 0.93 16 36 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.11 1.26 7.71 -51.93 -0.40 0.86 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.82 7.73 -51.93 -0.40 0.42 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.98 5.42 -51.93 -0.28 0.70 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -30.22 347.47 -9.87 -40.09 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.07 Total: 2.46 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -3.05 Total: -22.86 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.04 Total: -41.51 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.22 -9.87 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898322683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.405 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds