Wall clock time and date at job start Mon Mar 30 2020 01:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47503 * 2 1 4 4 C 1.53001 * 109.47000 * 119.99863 * 2 1 3 5 5 C 1.50697 * 109.47183 * 295.00451 * 4 2 1 6 6 H 1.07996 * 119.99805 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00007 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99546 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99816 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47431 * 89.99716 * 9 7 5 11 11 H 1.48501 * 109.47097 * 209.99626 * 9 7 5 12 12 H 1.48495 * 109.47362 * 329.99640 * 9 7 5 13 13 C 1.53002 * 109.47287 * 239.99896 * 2 1 3 14 14 N 1.46902 * 109.47090 * 64.99962 * 13 2 1 15 15 C 1.46893 * 110.99717 * 179.97438 * 14 13 2 16 16 H 1.08998 * 109.47342 * 35.00832 * 15 14 13 17 17 C 1.50704 * 109.46888 * 155.00425 * 15 14 13 18 18 C 1.38653 * 120.78770 * 39.71815 * 17 15 14 19 19 C 1.38211 * 119.16033 * 179.80164 * 18 17 15 20 20 N 1.31872 * 120.75976 * 0.48687 * 19 18 17 21 21 C 1.31864 * 121.73235 * 359.74209 * 20 19 18 22 22 C 1.38207 * 120.76399 * 0.02562 * 21 20 19 23 23 C 1.53003 * 109.47529 * 275.00078 * 15 14 13 24 24 C 1.53000 * 117.49792 * 180.02562 * 23 15 14 25 25 C 1.53002 * 60.02940 * 107.48056 * 24 23 15 26 26 H 1.09000 * 109.47503 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47390 * 300.00361 * 1 2 3 28 28 H 1.09003 * 109.46789 * 60.00148 * 1 2 3 29 29 H 1.09006 * 109.47021 * 55.00313 * 4 2 1 30 30 H 1.08997 * 109.47301 * 174.99701 * 4 2 1 31 31 H 0.97002 * 119.99140 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47043 * 305.00099 * 13 2 1 33 33 H 1.08996 * 109.46801 * 185.00384 * 13 2 1 34 34 H 1.00905 * 110.99403 * 56.04588 * 14 13 2 35 35 H 1.07993 * 120.42168 * 0.02562 * 18 17 15 36 36 H 1.07993 * 119.61976 * 180.20477 * 19 18 17 37 37 H 1.08003 * 119.61969 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.42266 * 179.97438 * 22 21 20 39 39 H 1.08999 * 115.55832 * 34.31818 * 23 15 14 40 40 H 1.09002 * 117.49833 * 214.98161 * 24 23 15 41 41 H 1.09002 * 117.49953 * 359.97438 * 24 23 15 42 42 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 43 43 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0805 0.9745 2.3756 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5188 3.8511 9 14 1.4994 0.5633 5.2496 10 1 0.1722 0.0953 5.7237 11 1 2.5090 0.3535 6.3182 12 1 1.4244 2.0085 4.9163 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1258 -0.6266 -3.6671 16 1 2.0824 -1.7075 -3.5334 17 6 1.2506 -0.2285 -4.8275 18 6 0.7948 1.0744 -4.9584 19 6 -0.0027 1.4036 -6.0382 20 7 -0.3379 0.4932 -6.9314 21 6 0.0733 -0.7561 -6.8364 22 6 0.8772 -1.1578 -5.7864 23 6 3.5694 -0.2051 -3.9489 24 6 4.2478 -0.7929 -5.1880 25 6 3.8216 0.6765 -5.1746 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1262 -0.7995 1.2057 31 1 2.9235 -1.8417 4.7318 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.9882 0.9873 -2.3966 35 1 1.0625 1.8234 -4.2279 36 1 -0.3591 2.4170 -6.1492 37 1 -0.2223 -1.4739 -7.5873 38 1 1.2105 -2.1824 -5.7138 39 1 4.1895 -0.0333 -3.0691 40 1 5.3144 -1.0082 -5.1233 41 1 3.6659 -1.4802 -5.8020 42 1 4.6078 1.4280 -5.1012 43 1 2.9591 0.9559 -5.7796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898322683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:43 Heat of formation + Delta-G solvation = 27.686063 kcal Electronic energy + Delta-G solvation = -20826.060191 eV Core-core repulsion = 17870.505643 eV Total energy + Delta-G solvation = -2955.554549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44843 -39.20396 -37.62810 -35.34836 -34.09575 -32.75746 -32.03469 -29.03882 -27.81450 -26.11297 -24.65682 -23.90676 -23.63251 -23.08699 -21.18283 -20.67379 -18.50571 -17.69762 -17.19578 -17.03748 -16.55515 -16.44366 -16.08355 -15.57532 -15.19618 -15.03660 -14.48999 -14.42240 -14.26618 -14.12242 -13.37925 -13.35119 -13.06989 -12.83353 -12.71179 -12.60547 -12.45359 -12.35355 -12.20184 -11.98688 -11.54858 -11.37715 -11.08219 -11.02504 -10.94583 -10.52962 -10.41036 -10.34415 -9.95840 -9.33931 -8.17287 -6.26020 0.30117 0.38152 1.40604 1.41231 1.52083 2.42148 2.73257 2.92896 3.16446 3.28737 3.62431 3.69282 3.76703 3.93085 4.06306 4.10151 4.16113 4.29237 4.32728 4.34732 4.48793 4.58574 4.62255 4.73426 4.79161 4.89941 4.93105 4.97081 4.98711 5.02978 5.06878 5.21880 5.25058 5.28748 5.44092 5.48856 5.51835 5.57973 5.82001 5.86452 5.89858 6.04340 6.31743 6.45158 6.90264 7.11509 7.42279 8.94722 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.027658 B = 0.003472 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.130661 B = 8062.828137 C = 8558.589829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.080 3.920 14 N -0.671 5.671 15 C 0.157 3.843 16 H 0.087 0.913 17 C -0.020 4.020 18 C -0.152 4.152 19 C 0.084 3.916 20 N -0.515 5.515 21 C 0.089 3.911 22 C -0.174 4.174 23 C -0.189 4.189 24 C -0.167 4.167 25 C -0.172 4.172 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.066 0.934 29 H -0.011 1.011 30 H -0.013 1.013 31 H 0.261 0.739 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.346 0.654 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.174 0.826 38 H 0.148 0.852 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 3.261 -21.688 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.049 4.049 14 N -0.301 5.301 15 C 0.047 3.953 16 H 0.105 0.895 17 C -0.028 4.028 18 C -0.172 4.172 19 C -0.072 4.072 20 N -0.224 5.224 21 C -0.068 4.068 22 C -0.195 4.195 23 C -0.209 4.209 24 C -0.204 4.204 25 C -0.209 4.209 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.007 0.993 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.187 0.813 37 H 0.191 0.809 38 H 0.165 0.835 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.485 3.123 -22.281 22.547 hybrid contribution 1.521 0.016 2.049 2.552 sum 0.036 3.140 -20.232 20.474 Atomic orbital electron populations 1.21483 0.94888 1.00234 1.00425 1.20997 0.96498 0.98502 0.93149 0.92641 1.19006 0.94136 0.94633 0.92709 1.21649 1.34299 1.08580 0.92107 0.92120 1.25936 0.95282 0.96107 1.02610 1.70101 1.40326 1.22970 1.24226 0.85530 0.77952 0.79358 0.78733 1.20009 1.20980 1.18708 1.21856 0.96927 0.97121 0.88985 1.60570 1.63214 1.05950 1.00340 1.19992 0.88756 0.98820 0.87749 0.89531 1.20167 0.94609 0.93822 0.94235 1.22032 0.98851 0.97138 0.99151 1.23056 0.94429 0.99607 0.90066 1.67675 1.22747 1.03061 1.28943 1.23065 0.93689 0.92940 0.97082 1.22209 1.00257 1.01243 0.95742 1.23013 0.97034 1.07200 0.93646 1.22968 1.01241 0.96534 0.99697 1.23131 1.03565 0.94083 1.00138 0.94835 0.94473 0.91541 0.99281 0.99455 0.92982 0.92055 0.95822 0.83446 0.84226 0.81267 0.80877 0.83464 0.88205 0.88126 0.88172 0.88366 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.24 8.89 71.98 0.64 -3.60 16 2 C -0.07 -2.86 2.48 -10.79 -0.03 -2.89 16 3 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -29.64 8.41 25.60 0.22 -29.42 16 6 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 8 N -0.94 -56.99 13.29 21.45 0.28 -56.71 16 9 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 13 C 0.08 2.58 4.87 86.30 0.42 3.00 16 14 N -0.67 -16.99 5.18 -495.46 -2.57 -19.56 16 15 C 0.16 3.36 2.62 44.17 0.12 3.47 16 16 H 0.09 1.95 7.70 -2.39 -0.02 1.93 16 17 C -0.02 -0.39 3.41 -19.66 -0.07 -0.46 16 18 C -0.15 -2.96 7.71 22.36 0.17 -2.78 16 19 C 0.08 1.65 11.18 84.68 0.95 2.59 16 20 N -0.51 -11.25 10.36 -195.84 -2.03 -13.28 16 21 C 0.09 1.64 11.18 84.68 0.95 2.59 16 22 C -0.17 -3.14 9.38 22.36 0.21 -2.93 16 23 C -0.19 -3.69 5.59 -10.77 -0.06 -3.75 16 24 C -0.17 -2.77 10.01 30.60 0.31 -2.47 16 25 C -0.17 -2.97 9.51 30.62 0.29 -2.68 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.49 6.95 -2.39 -0.02 1.48 16 28 H 0.07 2.16 7.75 -2.39 -0.02 2.14 16 29 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 31 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.06 2.06 8.06 -2.39 -0.02 2.04 16 33 H 0.02 0.78 7.63 -2.39 -0.02 0.76 16 34 H 0.35 8.24 7.92 -89.69 -0.71 7.53 16 35 H 0.14 2.50 7.37 -2.91 -0.02 2.48 16 36 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.10 2.20 7.71 -2.39 -0.02 2.19 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 1.54 7.73 -2.39 -0.02 1.52 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.10 1.73 5.42 -2.39 -0.01 1.72 16 Total: -1.00 -64.64 347.47 2.69 -61.95 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.27 Total: 18.40 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 4.71 Total: -37.16 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -4.31 Total: -89.54 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.64 2.69 -61.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898322683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.635 kcal (2) G-P(sol) polarization free energy of solvation -64.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds