Wall clock time and date at job start Mon Mar 30 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48500 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47353 * 300.00428 * 3 2 1 6 6 H 1.48506 * 109.47109 * 60.00091 * 3 2 1 7 7 C 1.37873 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00298 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.53492 * 114.20678 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98733 * 139.65331 * 10 9 7 12 12 C 1.34780 * 136.06263 * 152.62087 * 11 10 9 13 13 O 1.21760 * 119.99242 * 359.97438 * 12 11 10 14 14 C 1.41639 * 120.00194 * 180.02562 * 12 11 10 15 15 C 1.35501 * 120.00044 * 179.97438 * 14 12 11 16 16 C 1.41595 * 120.00400 * 179.97438 * 15 14 12 17 17 C 1.34058 * 120.00098 * 180.02562 * 16 15 14 18 18 Cl 1.73599 * 120.00269 * 0.02562 * 17 16 15 19 19 Cl 1.73598 * 119.99850 * 180.02562 * 17 16 15 20 20 C 1.47067 * 87.88528 * 332.87766 * 11 10 9 21 21 H 0.96998 * 119.99623 * 359.97438 * 1 2 3 22 22 H 1.08998 * 113.41339 * 46.79504 * 9 7 2 23 23 H 1.09001 * 113.47148 * 24.87445 * 10 9 7 24 24 H 1.08997 * 113.46749 * 254.43212 * 10 9 7 25 25 H 1.07997 * 120.00471 * 359.97438 * 14 12 11 26 26 H 1.08007 * 119.99624 * 0.02562 * 15 14 12 27 27 H 1.08005 * 119.99463 * 0.02562 * 16 15 14 28 28 H 1.09003 * 113.46750 * 141.89678 * 20 11 10 29 29 H 1.09000 * 113.47312 * 272.34122 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.1488 -3.7442 -0.0016 11 7 1.2093 -4.3579 0.9490 12 6 0.8310 -5.6117 1.2672 13 8 1.3236 -6.5619 0.6866 14 6 -0.1403 -5.8240 2.2760 15 6 -0.5209 -7.0846 2.5956 16 6 -1.4915 -7.2969 3.6045 17 6 -1.8676 -8.5441 3.9209 18 17 -1.1644 -9.8990 3.0942 19 17 -3.0580 -8.8042 5.1574 20 6 0.8592 -3.0009 1.3951 21 1 -0.4849 0.8401 0.0004 22 1 0.4418 -2.5314 -0.7311 23 1 3.1381 -3.5660 0.4198 24 1 2.1858 -4.2528 -0.9649 25 1 -0.5775 -4.9812 2.7907 26 1 -0.0834 -7.9275 2.0812 27 1 -1.9286 -6.4539 4.1191 28 1 -0.2003 -2.8774 1.6192 29 1 1.5050 -2.6246 2.1884 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898675930.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:34 Heat of formation + Delta-G solvation = 19.586263 kcal Electronic energy + Delta-G solvation = -15753.263725 eV Core-core repulsion = 12730.416312 eV Total energy + Delta-G solvation = -3022.847413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.022 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.71654 -37.91406 -37.33991 -36.86121 -35.16026 -32.74920 -30.95784 -29.06901 -25.62390 -25.03987 -23.38210 -20.65434 -19.91418 -18.34615 -17.12538 -16.65212 -16.55394 -15.45246 -14.85567 -14.55671 -14.40967 -13.93570 -13.40517 -13.19673 -12.53662 -12.30550 -12.03496 -11.77755 -11.59384 -11.55643 -11.39064 -11.19405 -11.00981 -10.87403 -10.84012 -10.39968 -9.75142 -9.29053 -9.09088 -8.64240 -8.52747 -7.88198 -6.23202 -4.28891 0.17294 0.98211 2.14459 2.22155 3.19900 3.29187 3.32467 3.57642 3.74812 4.29847 4.80232 4.88262 5.06432 5.13669 5.26628 5.61814 5.90443 6.07958 6.10726 6.22471 6.32079 6.39926 6.50840 6.62037 6.78259 7.50187 7.74781 8.12545 8.42323 8.64706 8.75791 9.38389 10.86576 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.003104 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.853847 B = 9017.099671 C = 9654.717343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.065 0.935 9 C 0.034 3.966 10 C 0.099 3.901 11 N -0.635 5.635 12 C 0.555 3.445 13 O -0.566 6.566 14 C -0.146 4.146 15 C -0.076 4.076 16 C -0.080 4.080 17 C -0.038 4.038 18 Cl -0.028 7.028 19 Cl -0.033 7.033 20 C 0.096 3.904 21 H 0.264 0.736 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.130 0.870 26 H 0.141 0.859 27 H 0.152 0.848 28 H 0.061 0.939 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 -13.054 9.284 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.015 3.985 10 C -0.024 4.024 11 N -0.367 5.367 12 C 0.348 3.652 13 O -0.449 6.449 14 C -0.166 4.166 15 C -0.097 4.097 16 C -0.100 4.100 17 C -0.091 4.091 18 Cl 0.000 7.000 19 Cl -0.005 7.005 20 C -0.027 4.027 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.148 0.852 26 H 0.159 0.841 27 H 0.170 0.830 28 H 0.080 0.920 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.164 -13.754 9.072 17.267 hybrid contribution 0.226 0.869 0.275 0.939 sum -4.937 -12.886 9.347 16.667 Atomic orbital electron populations 1.69959 1.06088 1.27092 1.49109 1.25039 0.94883 0.99477 0.94191 0.86467 0.80201 0.83219 0.77728 1.19528 1.20850 1.20894 1.20945 0.93084 0.89475 1.51999 0.91706 1.20364 0.94790 0.91233 0.92114 1.23372 0.94387 0.93100 0.91496 1.50015 1.41886 1.04931 1.39877 1.16594 0.83397 0.81620 0.83633 1.90784 1.58588 1.40567 1.54985 1.22363 0.98139 0.97788 0.98334 1.21447 0.94616 0.98643 0.94959 1.21105 0.97094 0.94377 0.97474 1.24967 0.97705 0.90287 0.96175 1.98431 1.81302 1.44708 1.75555 1.98421 1.54403 1.96806 1.50844 1.23700 0.99927 0.76627 1.02416 0.92646 0.91272 0.90655 0.92266 0.85187 0.84112 0.83045 0.92026 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.58 13.26 55.43 0.74 -22.84 15 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.52 -12.84 8.82 -34.44 -0.30 -13.14 15 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 15 9 C 0.03 0.78 3.79 -91.25 -0.35 0.43 15 10 C 0.10 2.02 8.18 -8.51 -0.07 1.95 15 11 N -0.63 -12.67 3.69 -188.67 -0.70 -13.37 15 12 C 0.56 10.71 7.81 -14.96 -0.12 10.60 15 13 O -0.57 -12.53 16.88 5.14 0.09 -12.44 15 14 C -0.15 -2.17 9.32 -39.26 -0.37 -2.53 15 15 C -0.08 -1.00 8.75 -39.28 -0.34 -1.34 15 16 C -0.08 -0.83 9.37 -39.77 -0.37 -1.20 15 17 C -0.04 -0.38 7.05 29.26 0.21 -0.18 15 18 Cl -0.03 -0.30 27.27 -51.86 -1.41 -1.72 15 19 Cl -0.03 -0.30 29.07 -51.86 -1.51 -1.81 15 20 C 0.10 1.93 7.79 -8.50 -0.07 1.86 15 21 H 0.26 6.68 8.31 -40.82 -0.34 6.34 15 22 H 0.07 1.73 8.11 -51.93 -0.42 1.31 15 23 H 0.08 1.48 8.10 -51.93 -0.42 1.06 15 24 H 0.06 1.20 8.14 -51.93 -0.42 0.77 15 25 H 0.13 1.66 7.87 -52.49 -0.41 1.24 15 26 H 0.14 2.03 6.09 -52.48 -0.32 1.71 15 27 H 0.15 1.25 8.06 -52.48 -0.42 0.82 15 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 29 H 0.08 1.51 8.10 -51.93 -0.42 1.09 15 LS Contribution 296.10 15.07 4.46 4.46 Total: -1.00 -27.74 296.10 -8.04 -35.77 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -2.81 Total: -0.76 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.88 Total: -1.93 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.04 Total: -36.21 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -2.92 Total: -3.52 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.74 -8.04 -35.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898675930.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.359 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds