Wall clock time and date at job start Mon Mar 30 2020 01:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48500 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47353 * 300.00428 * 3 2 1 6 6 H 1.48506 * 109.47109 * 60.00091 * 3 2 1 7 7 C 1.37873 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00298 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.53492 * 114.20678 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98733 * 139.65331 * 10 9 7 12 12 C 1.34780 * 136.06263 * 152.62087 * 11 10 9 13 13 O 1.21760 * 119.99242 * 359.97438 * 12 11 10 14 14 C 1.41639 * 120.00194 * 180.02562 * 12 11 10 15 15 C 1.35501 * 120.00044 * 179.97438 * 14 12 11 16 16 C 1.41595 * 120.00400 * 179.97438 * 15 14 12 17 17 C 1.34058 * 120.00098 * 180.02562 * 16 15 14 18 18 Cl 1.73599 * 120.00269 * 0.02562 * 17 16 15 19 19 Cl 1.73598 * 119.99850 * 180.02562 * 17 16 15 20 20 C 1.47067 * 87.88528 * 332.87766 * 11 10 9 21 21 H 0.96998 * 119.99623 * 359.97438 * 1 2 3 22 22 H 1.08998 * 113.41339 * 46.79504 * 9 7 2 23 23 H 1.09001 * 113.47148 * 24.87445 * 10 9 7 24 24 H 1.08997 * 113.46749 * 254.43212 * 10 9 7 25 25 H 1.07997 * 120.00471 * 359.97438 * 14 12 11 26 26 H 1.08007 * 119.99624 * 0.02562 * 15 14 12 27 27 H 1.08005 * 119.99463 * 0.02562 * 16 15 14 28 28 H 1.09003 * 113.46750 * 141.89678 * 20 11 10 29 29 H 1.09000 * 113.47312 * 272.34122 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.1488 -3.7442 -0.0016 11 7 1.2093 -4.3579 0.9490 12 6 0.8310 -5.6117 1.2672 13 8 1.3236 -6.5619 0.6866 14 6 -0.1403 -5.8240 2.2760 15 6 -0.5209 -7.0846 2.5956 16 6 -1.4915 -7.2969 3.6045 17 6 -1.8676 -8.5441 3.9209 18 17 -1.1644 -9.8990 3.0942 19 17 -3.0580 -8.8042 5.1574 20 6 0.8592 -3.0009 1.3951 21 1 -0.4849 0.8401 0.0004 22 1 0.4418 -2.5314 -0.7311 23 1 3.1381 -3.5660 0.4198 24 1 2.1858 -4.2528 -0.9649 25 1 -0.5775 -4.9812 2.7907 26 1 -0.0834 -7.9275 2.0812 27 1 -1.9286 -6.4539 4.1191 28 1 -0.2003 -2.8774 1.6192 29 1 1.5050 -2.6246 2.1884 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898675930.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:33 Heat of formation + Delta-G solvation = 4.675751 kcal Electronic energy + Delta-G solvation = -15753.910293 eV Core-core repulsion = 12730.416312 eV Total energy + Delta-G solvation = -3023.493981 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.022 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.27568 -39.14884 -38.55194 -37.70036 -36.22250 -34.64320 -32.19682 -30.58965 -27.32810 -26.69958 -24.68368 -22.08165 -21.05572 -19.78449 -18.81052 -18.15405 -17.72023 -16.73617 -16.62221 -16.16017 -15.63535 -15.12807 -14.72016 -14.33656 -14.03574 -13.96476 -13.25322 -13.19075 -13.05714 -12.75886 -12.58670 -12.57968 -12.35737 -12.17777 -12.09758 -11.89877 -11.45076 -11.05609 -10.83765 -10.52612 -9.72641 -9.30761 -8.15681 -6.26434 -0.85214 0.13669 1.15440 1.28693 1.47562 1.51662 1.61811 2.06522 2.36285 2.48560 3.14860 3.64414 3.87265 4.17465 4.21983 4.28768 4.41029 4.52661 4.64603 4.71938 4.78179 4.91036 5.02900 5.20108 5.33766 5.61127 5.82949 6.24318 6.82419 6.87692 7.11570 7.43658 8.94453 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.003104 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.853847 B = 9017.099671 C = 9654.717343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.526 4.526 8 H 0.067 0.933 9 C 0.021 3.979 10 C 0.103 3.897 11 N -0.639 5.639 12 C 0.553 3.447 13 O -0.603 6.603 14 C -0.175 4.175 15 C -0.043 4.043 16 C -0.087 4.087 17 C -0.024 4.024 18 Cl -0.034 7.034 19 Cl -0.015 7.015 20 C 0.113 3.887 21 H 0.265 0.735 22 H 0.039 0.961 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.154 0.846 26 H 0.127 0.873 27 H 0.180 0.820 28 H 0.066 0.934 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 -13.244 10.868 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.564 4.564 8 H 0.085 0.915 9 C 0.001 3.999 10 C -0.020 4.020 11 N -0.371 5.371 12 C 0.349 3.651 13 O -0.489 6.489 14 C -0.195 4.195 15 C -0.064 4.064 16 C -0.107 4.107 17 C -0.078 4.078 18 Cl -0.006 7.006 19 Cl 0.014 6.986 20 C -0.009 4.009 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.104 0.896 24 H 0.074 0.926 25 H 0.172 0.828 26 H 0.144 0.856 27 H 0.197 0.803 28 H 0.085 0.915 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.532 -13.952 10.668 18.413 hybrid contribution 0.269 0.732 -0.186 0.801 sum -5.263 -13.220 10.482 17.673 Atomic orbital electron populations 1.70059 1.07363 1.27792 1.50378 1.25750 0.95582 1.02512 0.94068 0.85496 0.79217 0.79395 0.77475 1.18863 1.21096 1.20524 1.21231 0.93342 0.90421 1.51447 0.91526 1.20250 0.94615 0.91704 0.93290 1.23255 0.94684 0.92108 0.91920 1.49987 1.41941 1.05275 1.39894 1.17225 0.83466 0.80615 0.83820 1.90758 1.60140 1.41346 1.56664 1.22181 0.99084 0.99289 0.98973 1.21481 0.93417 0.97497 0.93971 1.21176 0.96911 0.95332 0.97293 1.25150 0.96991 0.90092 0.95578 1.98444 1.81390 1.45075 1.75699 1.98438 1.53520 1.96723 1.49909 1.23422 1.00350 0.76410 1.00742 0.92640 0.94239 0.89602 0.92591 0.82834 0.85572 0.80304 0.91517 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.12 13.26 21.45 0.28 -48.84 15 2 C 0.02 1.07 5.46 84.65 0.46 1.53 15 3 Si 0.96 40.02 29.54 68.60 2.03 42.05 15 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 15 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 6 H -0.28 -11.44 7.11 99.48 0.71 -10.74 15 7 C -0.53 -26.12 8.82 25.60 0.23 -25.90 15 8 H 0.07 3.21 7.81 -2.91 -0.02 3.19 15 9 C 0.02 0.96 3.79 -11.20 -0.04 0.91 15 10 C 0.10 4.24 8.18 83.18 0.68 4.92 15 11 N -0.64 -25.40 3.69 -869.00 -3.21 -28.60 15 12 C 0.55 21.23 7.81 85.08 0.66 21.90 15 13 O -0.60 -26.92 16.88 -4.54 -0.08 -26.99 15 14 C -0.17 -4.98 9.32 22.48 0.21 -4.77 15 15 C -0.04 -1.05 8.75 22.47 0.20 -0.86 15 16 C -0.09 -1.57 9.37 22.15 0.21 -1.36 15 17 C -0.02 -0.43 7.05 66.87 0.47 0.04 15 18 Cl -0.03 -0.68 27.27 -2.72 -0.07 -0.76 15 19 Cl -0.01 -0.22 29.07 -2.72 -0.08 -0.30 15 20 C 0.11 4.50 7.79 83.18 0.65 5.15 15 21 H 0.26 13.45 8.31 -92.71 -0.77 12.68 15 22 H 0.04 2.05 8.11 -2.39 -0.02 2.03 15 23 H 0.09 3.34 8.10 -2.39 -0.02 3.32 15 24 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.15 3.58 7.87 -2.91 -0.02 3.56 15 26 H 0.13 3.52 6.09 -2.91 -0.02 3.50 15 27 H 0.18 2.28 8.06 -2.91 -0.02 2.25 15 28 H 0.07 2.58 8.14 -2.39 -0.02 2.56 15 29 H 0.09 3.25 8.10 -2.39 -0.02 3.24 15 Total: -1.00 -58.95 296.10 3.77 -55.18 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.17 Total: 6.69 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 3.72 Total: 1.57 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -2.92 Total: -77.44 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.08 Total: -26.99 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.15 Total: -1.06 kcal Total: -58.95 3.77 -55.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898675930.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.857 kcal (2) G-P(sol) polarization free energy of solvation -58.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds