Wall clock time and date at job start Mon Mar 30 2020 01:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47152 * 2 1 4 4 C 1.39675 * 120.00071 * 180.02562 * 3 2 1 5 5 C 1.38927 * 120.07278 * 359.97438 * 4 3 2 6 6 C 1.38081 * 119.92497 * 179.97438 * 5 4 3 7 7 C 1.38304 * 120.07385 * 0.02562 * 6 5 4 8 8 C 1.38266 * 120.15021 * 359.97438 * 7 6 5 9 9 C 1.38123 * 120.07300 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.03797 * 180.02562 * 9 8 7 11 11 N 1.46892 * 109.47583 * 258.47175 * 10 9 8 12 12 C 1.46897 * 111.00405 * 182.97824 * 11 10 9 13 13 C 1.53003 * 109.47184 * 184.56617 * 12 11 10 14 14 C 1.50695 * 115.54821 * 64.79429 * 13 12 11 15 15 H 1.07996 * 120.00381 * 266.79483 * 14 13 12 16 16 C 1.37886 * 120.00244 * 86.79405 * 14 13 12 17 17 N 1.31510 * 120.00026 * 178.97825 * 16 14 13 18 18 Si 1.86809 * 119.99511 * 358.97953 * 16 14 13 19 19 H 1.48495 * 109.46875 * 89.98628 * 18 16 14 20 20 H 1.48499 * 109.46750 * 209.98166 * 18 16 14 21 21 H 1.48494 * 109.46961 * 329.98274 * 18 16 14 22 22 C 1.52998 * 117.50179 * 279.12339 * 13 12 11 23 23 C 1.52998 * 117.50002 * 210.46039 * 13 12 11 24 24 H 1.09007 * 109.47184 * 60.00393 * 1 2 3 25 25 H 1.08999 * 109.47397 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47516 * 300.00129 * 1 2 3 27 27 H 1.09006 * 109.46874 * 240.00487 * 2 1 3 28 28 H 1.08997 * 109.46880 * 120.00110 * 2 1 3 29 29 H 0.97005 * 119.99570 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.03897 * 359.96112 * 5 4 3 31 31 H 1.07996 * 119.96534 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.92852 * 179.71998 * 7 6 5 33 33 H 1.08004 * 119.96579 * 180.02562 * 8 7 6 34 34 H 1.09007 * 109.46711 * 18.47180 * 10 9 8 35 35 H 1.08999 * 109.47080 * 138.46638 * 10 9 8 36 36 H 1.00906 * 110.99967 * 306.94094 * 11 10 9 37 37 H 1.08995 * 109.47214 * 304.57410 * 12 11 10 38 38 H 1.09006 * 109.46664 * 64.57110 * 12 11 10 39 39 H 0.97002 * 119.99387 * 180.02562 * 17 16 14 40 40 H 1.09002 * 117.49740 * 359.97438 * 22 13 12 41 41 H 1.08996 * 117.50115 * 145.02022 * 22 13 12 42 42 H 1.08991 * 117.50173 * 214.98443 * 23 13 12 43 43 H 1.09006 * 117.49486 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3915 1.6365 -0.0005 5 6 4.2957 0.5817 -0.0005 6 6 5.6526 0.8375 -0.0016 7 6 6.1119 2.1420 -0.0021 8 6 5.2148 3.1941 -0.0021 9 6 3.8562 2.9453 -0.0011 10 6 2.8791 4.0926 -0.0017 11 7 2.3517 4.2874 1.3554 12 6 1.3415 5.3537 1.3797 13 6 0.8996 5.6049 2.8228 14 6 1.9648 6.1394 3.7450 15 1 2.5545 5.4587 4.3410 16 6 2.1868 7.4978 3.8279 17 7 3.1026 7.9656 4.6476 18 14 1.1864 8.6735 2.7759 19 1 -0.0368 9.0791 3.5136 20 1 2.0004 9.8766 2.4676 21 1 0.8006 7.9992 1.5104 22 6 -0.1386 4.6527 3.4196 23 6 -0.5358 6.0837 3.0489 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.3879 2.1185 0.0004 30 1 3.9377 -0.4373 0.0005 31 1 6.3560 0.0180 -0.0020 32 1 7.1737 2.3394 0.0016 33 1 5.5768 4.2117 -0.0030 34 1 3.3855 5.0009 -0.3285 35 1 2.0574 3.8698 -0.6823 36 1 1.9775 3.4263 1.7250 37 1 1.7678 6.2675 0.9659 38 1 0.4804 5.0520 0.7833 39 1 3.2584 8.9212 4.7061 40 1 -0.5072 3.8475 2.7840 41 1 -0.0514 4.4131 4.4794 42 1 -0.7097 6.7851 3.8649 43 1 -1.1652 6.2203 2.1694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902542784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:38 Heat of formation + Delta-G solvation = 52.902125 kcal Electronic energy + Delta-G solvation = -21205.641398 eV Core-core repulsion = 18251.180300 eV Total energy + Delta-G solvation = -2954.461098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.61982 -37.33679 -35.98194 -34.69926 -31.94409 -31.46709 -30.82358 -28.05883 -26.50208 -25.22798 -23.66219 -23.16722 -21.59080 -21.12547 -20.73786 -18.86641 -17.25648 -16.57158 -16.06755 -15.36243 -15.19069 -14.95988 -14.33348 -14.18416 -14.09480 -13.82737 -13.59028 -13.17714 -12.73990 -12.66141 -12.46114 -12.27771 -11.98014 -11.77739 -11.69592 -11.55634 -11.08774 -11.03878 -10.66902 -10.48045 -10.40617 -10.01635 -9.97082 -9.51766 -8.99241 -8.62115 -8.46481 -8.38805 -7.64776 -7.25679 -5.96118 -3.95077 1.62496 1.82935 3.35128 3.43771 3.44169 3.47214 4.04108 4.52449 4.72852 4.80689 4.90662 5.01458 5.07945 5.16471 5.20403 5.27926 5.32678 5.48003 5.52104 5.65312 5.72206 5.77086 5.80423 5.85754 5.91985 6.04000 6.11016 6.17538 6.22323 6.26888 6.44568 6.47834 6.51225 6.72700 6.75122 6.88734 7.05511 7.09982 7.22042 7.44461 7.72851 7.76491 7.84539 8.06440 8.67411 9.10395 9.67167 11.16728 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017728 B = 0.005298 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.006889 B = 5283.254334 C = 6322.999434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 N -0.751 5.751 4 C 0.219 3.781 5 C -0.201 4.201 6 C -0.079 4.079 7 C -0.179 4.179 8 C -0.053 4.053 9 C -0.146 4.146 10 C 0.104 3.896 11 N -0.658 5.658 12 C 0.098 3.902 13 C 0.010 3.990 14 C -0.460 4.460 15 H 0.078 0.922 16 C 0.073 3.927 17 N -0.903 5.903 18 Si 0.879 3.121 19 H -0.282 1.282 20 H -0.296 1.296 21 H -0.262 1.262 22 C -0.184 4.184 23 C -0.204 4.204 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.397 0.603 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.019 0.981 36 H 0.333 0.667 37 H 0.069 0.931 38 H -0.001 1.001 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 -14.777 -12.273 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.002 4.002 3 N -0.383 5.383 4 C 0.116 3.884 5 C -0.223 4.223 6 C -0.098 4.098 7 C -0.199 4.199 8 C -0.072 4.072 9 C -0.150 4.150 10 C -0.025 4.025 11 N -0.289 5.289 12 C -0.031 4.031 13 C 0.009 3.991 14 C -0.498 4.498 15 H 0.096 0.904 16 C -0.128 4.128 17 N -0.541 5.541 18 Si 0.708 3.292 19 H -0.208 1.208 20 H -0.223 1.223 21 H -0.187 1.187 22 C -0.221 4.221 23 C -0.242 4.242 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.233 0.767 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.151 0.849 37 H 0.088 0.912 38 H 0.017 0.983 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.347 -14.394 -12.016 18.799 hybrid contribution -1.542 0.583 -0.875 1.866 sum -2.889 -13.811 -12.891 19.112 Atomic orbital electron populations 1.21980 0.94798 1.02861 1.02713 1.21225 0.94325 0.83752 1.00884 1.44764 1.03531 1.07049 1.82986 1.17649 0.83749 0.92970 0.94041 1.20507 0.92988 0.97289 1.11544 1.20808 0.94615 0.96582 0.97794 1.20868 0.99244 0.92638 1.07165 1.20844 0.91773 0.99154 0.95420 1.19345 0.94867 0.92032 1.08791 1.20727 0.95038 0.96102 0.90638 1.60243 1.39590 1.10067 1.19006 1.21769 0.90653 0.94233 0.96408 1.19421 0.88301 0.98490 0.92875 1.20152 1.16116 0.91947 1.21537 0.90396 1.24937 0.94931 0.98035 0.94857 1.69897 1.33329 1.13457 1.37465 0.86878 0.79914 0.80410 0.81985 1.20790 1.22340 1.18700 1.22780 1.07044 0.91477 1.00800 1.22993 1.01199 0.97905 1.02083 0.92216 0.91016 0.91757 0.92638 0.92312 0.76750 0.86664 0.86696 0.86666 0.85947 0.90360 0.96298 0.84883 0.91245 0.98284 0.92866 0.91658 0.89580 0.89392 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.03 37.16 0.37 -0.93 16 2 C 0.12 1.15 5.63 -4.04 -0.02 1.13 16 3 N -0.75 -9.07 5.43 -58.63 -0.32 -9.39 16 4 C 0.22 3.06 6.56 -83.79 -0.55 2.51 16 5 C -0.20 -2.58 9.31 -39.38 -0.37 -2.94 16 6 C -0.08 -0.98 10.04 -39.61 -0.40 -1.38 16 7 C -0.18 -2.38 10.04 -39.55 -0.40 -2.78 16 8 C -0.05 -0.79 9.66 -39.61 -0.38 -1.17 16 9 C -0.15 -2.24 5.39 -104.42 -0.56 -2.80 16 10 C 0.10 1.67 5.11 -4.98 -0.03 1.65 16 11 N -0.66 -12.59 6.38 -115.06 -0.73 -13.32 16 12 C 0.10 2.03 5.14 -3.82 -0.02 2.01 16 13 C 0.01 0.24 1.00 -155.66 -0.15 0.08 16 14 C -0.46 -12.94 9.32 -34.44 -0.32 -13.26 16 15 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 18 Si 0.88 21.96 24.85 -169.99 -4.22 17.74 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 21 H -0.26 -6.16 5.78 56.52 0.33 -5.84 16 22 C -0.18 -3.72 9.96 -26.69 -0.27 -3.99 16 23 C -0.20 -4.35 7.62 -26.69 -0.20 -4.55 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 28 H 0.06 0.56 7.95 -51.93 -0.41 0.14 16 29 H 0.40 4.89 6.26 -40.82 -0.26 4.63 16 30 H 0.12 1.26 6.74 -52.48 -0.35 0.90 16 31 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.76 8.03 -52.48 -0.42 1.34 16 34 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 35 H 0.02 0.28 7.18 -51.93 -0.37 -0.09 16 36 H 0.33 6.11 7.95 -39.29 -0.31 5.80 16 37 H 0.07 1.54 6.64 -51.93 -0.34 1.20 16 38 H 0.00 -0.02 8.10 -51.93 -0.42 -0.44 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 42 H 0.09 1.99 7.26 -51.93 -0.38 1.61 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -30.85 344.27 -9.82 -40.68 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -7.11 Total: 10.70 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -3.40 Total: -24.40 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.28 Total: -49.91 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.22 Total: 17.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.85 -9.82 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902542784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.580 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds