Wall clock time and date at job start Mon Mar 30 2020 01:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99869 * 2 1 4 4 H 1.48501 * 109.47146 * 269.99718 * 3 2 1 5 5 H 1.48501 * 109.46853 * 29.99757 * 3 2 1 6 6 H 1.48497 * 109.47001 * 149.99488 * 3 2 1 7 7 C 1.37879 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99795 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00122 * 180.02562 * 7 2 1 10 10 S 1.81391 * 109.47313 * 180.02562 * 9 7 2 11 11 O 1.42105 * 108.57942 * 294.48966 * 10 9 7 12 12 O 1.42097 * 108.57959 * 65.51495 * 10 9 7 13 13 C 1.81398 * 101.92304 * 180.02562 * 10 9 7 14 14 C 1.50702 * 109.47325 * 179.97438 * 13 10 9 15 15 C 1.38193 * 119.60977 * 269.72822 * 14 13 10 16 16 C 1.38670 * 119.19053 * 179.77491 * 15 14 13 17 17 C 1.38603 * 118.43633 * 0.48966 * 16 15 14 18 18 C 1.38357 * 119.15136 * 359.75372 * 17 16 15 19 19 Cl 1.73607 * 119.63289 * 179.97438 * 18 17 16 20 20 N 1.31871 * 119.60847 * 90.00262 * 14 13 10 21 21 H 0.96993 * 120.00295 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46853 * 59.99802 * 9 7 2 23 23 H 1.09003 * 109.47076 * 300.01046 * 9 7 2 24 24 H 1.08998 * 109.47096 * 300.00087 * 13 10 9 25 25 H 1.09006 * 109.47169 * 59.99793 * 13 10 9 26 26 H 1.08001 * 120.40053 * 359.97438 * 15 14 13 27 27 H 1.07998 * 120.77668 * 180.21970 * 16 15 14 28 28 H 1.08000 * 120.42410 * 179.77647 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 16 4.1163 -2.9042 0.0010 11 8 3.7403 -3.5175 1.2265 12 8 3.7414 -3.5169 -1.2251 13 6 5.9145 -2.6659 0.0025 14 6 6.5992 -4.0084 0.0032 15 6 6.9135 -4.6140 1.2050 16 6 7.5392 -5.8514 1.1955 17 6 7.8361 -6.4315 -0.0278 18 6 7.4960 -5.7636 -1.1907 19 17 7.8626 -6.4783 -2.7298 20 7 6.8963 -4.5888 -1.1430 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8753 -0.6803 -0.8888 24 1 6.2079 -2.1084 -0.8870 25 1 6.2065 -2.1090 0.8930 26 1 6.6717 -4.1308 2.1401 27 1 7.7932 -6.3493 2.1196 28 1 8.3264 -7.3928 -0.0726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266138.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:21 Heat of formation + Delta-G solvation = -42.927063 kcal Electronic energy + Delta-G solvation = -16507.969810 eV Core-core repulsion = 13484.455322 eV Total energy + Delta-G solvation = -3023.514488 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50988 -36.83824 -36.19392 -35.23573 -33.39824 -33.26675 -32.47845 -29.90266 -28.17913 -23.78078 -23.38142 -22.40195 -18.25137 -17.60466 -17.26771 -16.86316 -16.07643 -15.94689 -15.27907 -15.25500 -14.49153 -14.19745 -13.94383 -13.48830 -12.74944 -12.71459 -12.53738 -12.29017 -11.96295 -11.63404 -11.45946 -11.29137 -11.23128 -10.88479 -10.78399 -10.36661 -10.09757 -9.91404 -9.81226 -9.44974 -8.95705 -8.84723 -6.32066 -4.41040 0.36797 0.80194 1.03108 1.61628 3.13207 3.18417 3.21835 3.37644 3.52572 3.82498 4.19708 4.25644 4.52576 4.58376 4.68424 4.78067 4.94242 4.99034 5.10308 5.29740 5.56801 5.65351 5.80438 6.12666 6.19846 6.23511 7.16089 7.48336 8.01338 8.61842 9.21644 10.79056 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.034788 B = 0.004641 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.676565 B = 6031.573337 C = 6240.095034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.088 3.912 3 Si 0.882 3.118 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.089 0.911 9 C -0.452 4.452 10 S 2.413 3.587 11 O -0.942 6.942 12 O -0.932 6.932 13 C -0.590 4.590 14 C 0.160 3.840 15 C -0.156 4.156 16 C -0.059 4.059 17 C -0.157 4.157 18 C 0.180 3.820 19 Cl -0.030 7.030 20 N -0.464 5.464 21 H 0.272 0.728 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.553 -8.141 2.062 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.119 4.119 3 Si 0.707 3.293 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.107 0.893 9 C -0.586 4.586 10 S 2.595 3.405 11 O -0.939 6.939 12 O -0.929 6.929 13 C -0.713 4.713 14 C 0.021 3.979 15 C -0.176 4.176 16 C -0.084 4.084 17 C -0.178 4.178 18 C 0.015 3.985 19 Cl -0.001 7.001 20 N -0.176 5.176 21 H 0.082 0.918 22 H 0.104 0.896 23 H 0.101 0.899 24 H 0.169 0.831 25 H 0.166 0.834 26 H 0.171 0.829 27 H 0.169 0.831 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.791 -8.488 1.140 19.745 hybrid contribution 1.125 1.217 0.505 1.733 sum 18.916 -7.271 1.645 20.332 Atomic orbital electron populations 1.69861 1.06284 1.27802 1.47559 1.24892 0.94763 0.99098 0.93124 0.86747 0.80376 0.83036 0.79100 1.19512 1.20560 1.18715 1.20091 0.84878 0.96397 1.55546 0.89341 1.27997 1.08660 1.16106 1.05854 1.08575 0.75422 0.81019 0.75488 1.93501 1.79186 1.75343 1.45899 1.93532 1.78853 1.75076 1.45412 1.29769 1.28980 0.99799 1.12709 1.19992 0.95916 0.94039 0.87914 1.22207 0.99139 0.96665 0.99623 1.21617 0.94571 0.94083 0.98174 1.21887 1.02668 1.01940 0.91277 1.21606 0.97321 0.91727 0.87886 1.98409 1.92211 1.80562 1.28931 1.66725 1.11143 1.09623 1.30080 0.91808 0.89565 0.89886 0.83147 0.83431 0.82935 0.83080 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.96 55.43 0.77 -25.26 15 2 C 0.09 2.45 5.47 -17.82 -0.10 2.35 15 3 Si 0.88 19.94 27.47 -169.99 -4.67 15.28 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.55 15 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 6 H -0.26 -5.39 6.54 56.52 0.37 -5.02 15 7 C -0.53 -14.73 9.68 -34.44 -0.33 -15.06 15 8 H 0.09 2.69 7.96 -52.49 -0.42 2.27 15 9 C -0.45 -9.71 4.63 36.00 0.17 -9.55 15 10 S 2.41 48.13 4.62 -107.50 -0.50 47.63 15 11 O -0.94 -20.81 18.10 -57.83 -1.05 -21.86 15 12 O -0.93 -22.07 18.10 -57.83 -1.05 -23.12 15 13 C -0.59 -8.31 6.09 36.01 0.22 -8.09 15 14 C 0.16 2.39 6.04 -82.59 -0.50 1.90 15 15 C -0.16 -1.88 9.74 -39.44 -0.38 -2.26 15 16 C -0.06 -0.57 10.17 -39.29 -0.40 -0.97 15 17 C -0.16 -1.63 9.88 -39.40 -0.39 -2.02 15 18 C 0.18 2.47 7.27 -17.44 -0.13 2.34 15 19 Cl -0.03 -0.36 29.11 -51.86 -1.51 -1.87 15 20 N -0.46 -7.55 10.25 -6.61 -0.07 -7.62 15 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.09 1.63 7.20 -51.92 -0.37 1.26 15 23 H 0.08 1.59 7.57 -51.92 -0.39 1.20 15 24 H 0.15 1.86 8.14 -51.93 -0.42 1.43 15 25 H 0.15 1.47 8.07 -51.92 -0.42 1.05 15 26 H 0.15 1.47 8.06 -52.49 -0.42 1.05 15 27 H 0.15 0.88 8.06 -52.49 -0.42 0.45 15 28 H 0.15 1.05 8.06 -52.49 -0.42 0.63 15 LS Contribution 282.76 15.07 4.26 4.26 Total: -1.00 -35.86 282.76 -8.11 -43.96 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -2.46 Total: -0.06 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: -1.84 Total: -31.36 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.71 Total: -32.88 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -2.09 Total: -44.97 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.28 kcal Atomic # 16 Polarization: 48.13 SS G_CDS: -0.50 Total: 47.63 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -35.86 -8.11 -43.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266138.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.037 kcal (2) G-P(sol) polarization free energy of solvation -35.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds