Wall clock time and date at job start Mon Mar 30 2020 01:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00193 * 2 1 4 4 H 1.48508 * 109.47444 * 270.00491 * 3 2 1 5 5 H 1.48501 * 109.46884 * 30.00303 * 3 2 1 6 6 H 1.48497 * 109.47341 * 150.00248 * 3 2 1 7 7 C 1.37871 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00480 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99956 * 179.97438 * 7 2 1 10 10 S 1.81401 * 109.47096 * 179.97438 * 9 7 2 11 11 O 1.42102 * 108.57780 * 65.51375 * 10 9 7 12 12 O 1.42097 * 108.57824 * 294.48670 * 10 9 7 13 13 C 1.81408 * 101.92179 * 179.97438 * 10 9 7 14 14 C 1.50693 * 109.47173 * 179.97438 * 13 10 9 15 15 C 1.38233 * 119.60346 * 89.99954 * 14 13 10 16 16 C 1.38613 * 119.17625 * 179.97438 * 15 14 13 17 17 C 1.38780 * 118.40577 * 0.25575 * 16 15 14 18 18 Cl 1.73608 * 120.42624 * 179.72626 * 17 16 15 19 19 C 1.38302 * 119.13930 * 359.50003 * 17 16 15 20 20 N 1.31846 * 119.60635 * 269.97706 * 14 13 10 21 21 H 0.96999 * 120.00003 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47245 * 59.99349 * 9 7 2 23 23 H 1.08999 * 109.46903 * 299.99664 * 9 7 2 24 24 H 1.09000 * 109.46815 * 60.00101 * 13 10 9 25 25 H 1.08992 * 109.46719 * 300.00137 * 13 10 9 26 26 H 1.08002 * 120.41515 * 359.97438 * 15 14 13 27 27 H 1.08002 * 120.79267 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.62475 * 180.23223 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1161 -2.9044 -0.0010 11 8 3.7401 -3.5176 -1.2265 12 8 3.7411 -3.5170 1.2251 13 6 5.9145 -2.6661 -0.0025 14 6 6.5990 -4.0086 -0.0019 15 6 6.9083 -4.6179 -1.2036 16 6 7.5385 -5.8524 -1.1927 17 6 7.8308 -6.4337 0.0332 18 17 8.6128 -7.9819 0.1080 19 6 7.4953 -5.7615 1.1943 20 7 6.8962 -4.5877 1.1446 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6804 0.8888 23 1 3.8745 -0.6801 -0.8912 24 1 6.2078 -2.1087 0.8871 25 1 6.2063 -2.1094 -0.8929 26 1 6.6621 -4.1380 -2.1393 27 1 7.7918 -6.3521 -2.1161 28 1 7.7226 -6.2048 2.1526 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266789.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:24 Heat of formation + Delta-G solvation = -43.943397 kcal Electronic energy + Delta-G solvation = -16428.997665 eV Core-core repulsion = 13405.439105 eV Total energy + Delta-G solvation = -3023.558559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.53012 -36.96909 -36.20596 -35.24693 -33.28127 -33.12315 -32.70415 -29.90773 -28.06802 -24.02994 -23.33477 -22.33203 -18.25437 -17.57587 -17.23925 -17.00798 -16.19463 -15.95688 -15.27361 -15.16591 -14.37314 -14.17477 -13.92734 -13.52673 -12.75920 -12.70429 -12.57610 -12.53006 -12.30429 -11.64685 -11.51744 -11.30296 -11.24399 -10.89269 -10.71104 -10.34268 -10.13070 -9.92007 -9.79343 -9.46939 -8.92128 -8.85446 -6.32708 -4.41700 0.31711 0.86817 0.94804 1.71217 3.11977 3.18216 3.21311 3.38557 3.52535 3.81312 4.19011 4.19393 4.42559 4.52358 4.57394 4.73223 4.85854 4.96253 5.27269 5.37954 5.46164 5.65234 5.68577 6.11433 6.19635 6.23273 7.15429 7.58676 8.00652 8.61176 9.20990 10.78375 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.051691 B = 0.004098 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.549227 B = 6831.688393 C = 6914.387034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.087 3.913 3 Si 0.882 3.118 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.089 0.911 9 C -0.452 4.452 10 S 2.414 3.586 11 O -0.942 6.942 12 O -0.932 6.932 13 C -0.590 4.590 14 C 0.144 3.856 15 C -0.146 4.146 16 C -0.062 4.062 17 C -0.093 4.093 18 Cl -0.055 7.055 19 C 0.120 3.880 20 N -0.453 5.453 21 H 0.272 0.728 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.150 0.850 25 H 0.146 0.854 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.470 -7.991 -1.853 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.119 4.119 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.107 0.893 9 C -0.586 4.586 10 S 2.595 3.405 11 O -0.940 6.940 12 O -0.929 6.929 13 C -0.712 4.712 14 C 0.006 3.994 15 C -0.166 4.166 16 C -0.089 4.089 17 C -0.122 4.122 18 Cl -0.027 7.027 19 C -0.039 4.039 20 N -0.163 5.163 21 H 0.082 0.918 22 H 0.105 0.895 23 H 0.100 0.900 24 H 0.168 0.832 25 H 0.164 0.836 26 H 0.172 0.828 27 H 0.169 0.831 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 17.738 -8.399 -1.066 19.655 hybrid contribution 1.187 1.080 -0.790 1.789 sum 18.925 -7.319 -1.856 20.376 Atomic orbital electron populations 1.69862 1.06278 1.27797 1.47529 1.24893 0.94773 0.99108 0.93142 0.86748 0.80459 0.83049 0.79013 1.19567 1.20540 1.18679 1.20089 0.84882 0.96388 1.55551 0.89344 1.27998 1.08656 1.16112 1.05848 1.08562 0.75426 0.81000 0.75467 1.93502 1.79189 1.75371 1.45899 1.93527 1.78900 1.75079 1.45444 1.29741 1.28926 0.99883 1.12670 1.20269 0.95830 0.94296 0.89037 1.22129 0.98834 0.95720 0.99955 1.21553 0.95423 0.94459 0.97424 1.22145 1.03186 0.90440 0.96450 1.98380 1.78912 1.26646 1.98732 1.22835 0.93369 0.90021 0.97635 1.67632 1.10296 1.09625 1.28698 0.91811 0.89463 0.90002 0.83153 0.83558 0.82770 0.83146 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.90 13.96 55.43 0.77 -25.13 15 2 C 0.09 2.43 5.47 -17.82 -0.10 2.33 15 3 Si 0.88 19.83 27.47 -169.99 -4.67 15.16 15 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 6 H -0.26 -5.40 6.54 56.52 0.37 -5.03 15 7 C -0.53 -14.63 9.68 -34.44 -0.33 -14.96 15 8 H 0.09 2.67 7.96 -52.49 -0.42 2.26 15 9 C -0.45 -9.61 4.63 36.01 0.17 -9.44 15 10 S 2.41 47.38 4.62 -107.50 -0.50 46.88 15 11 O -0.94 -20.67 18.10 -57.83 -1.05 -21.71 15 12 O -0.93 -21.67 18.10 -57.83 -1.05 -22.72 15 13 C -0.59 -8.09 6.09 36.00 0.22 -7.87 15 14 C 0.14 2.10 6.04 -82.59 -0.50 1.60 15 15 C -0.15 -1.78 9.74 -39.44 -0.38 -2.16 15 16 C -0.06 -0.66 9.98 -39.24 -0.39 -1.06 15 17 C -0.09 -1.03 6.34 -39.36 -0.25 -1.28 15 18 Cl -0.06 -0.52 28.99 -51.86 -1.50 -2.02 15 19 C 0.12 1.49 10.99 -17.51 -0.19 1.30 15 20 N -0.45 -6.88 10.27 -9.45 -0.10 -6.98 15 21 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 22 H 0.09 1.68 7.20 -51.92 -0.37 1.31 15 23 H 0.08 1.51 7.57 -51.92 -0.39 1.11 15 24 H 0.15 1.79 8.14 -51.92 -0.42 1.37 15 25 H 0.15 1.43 8.08 -51.93 -0.42 1.01 15 26 H 0.15 1.52 8.06 -52.49 -0.42 1.09 15 27 H 0.15 1.15 8.06 -52.49 -0.42 0.73 15 28 H 0.17 1.62 8.06 -52.48 -0.42 1.20 15 LS Contribution 282.65 15.07 4.26 4.26 Total: -1.00 -35.04 282.65 -8.05 -43.09 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -2.46 Total: 0.73 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: -1.76 Total: -31.56 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.68 Total: -32.10 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -2.09 Total: -44.43 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.67 Total: 15.16 kcal Atomic # 16 Polarization: 47.38 SS G_CDS: -0.50 Total: 46.88 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -35.04 -8.05 -43.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266789.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.857 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds