Wall clock time and date at job start Mon Mar 30 2020 01:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48503 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47420 * 299.99883 * 3 2 1 6 6 H 1.48503 * 109.47296 * 60.00322 * 3 2 1 7 7 C 1.37870 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00224 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99931 * 0.02562 * 7 2 1 10 10 S 1.81403 * 109.46872 * 179.97438 * 9 7 2 11 11 O 1.42105 * 108.57861 * 65.51026 * 10 9 7 12 12 O 1.42100 * 108.57832 * 294.48275 * 10 9 7 13 13 C 1.81402 * 101.91992 * 179.97438 * 10 9 7 14 14 C 1.50696 * 109.47187 * 179.97438 * 13 10 9 15 15 C 1.38714 * 120.78567 * 269.98019 * 14 13 10 16 16 C 1.38143 * 119.19787 * 180.02562 * 15 14 13 17 17 N 1.31904 * 120.77996 * 0.02562 * 16 15 14 18 18 C 1.31950 * 121.70670 * 359.68219 * 17 16 15 19 19 Cl 1.73608 * 119.63367 * 180.28810 * 18 17 16 20 20 C 1.38393 * 120.73265 * 0.58300 * 18 17 16 21 21 H 0.97005 * 120.00009 * 359.97438 * 1 2 3 22 22 H 1.08991 * 109.47408 * 59.99943 * 9 7 2 23 23 H 1.09002 * 109.46979 * 299.99477 * 9 7 2 24 24 H 1.09004 * 109.46612 * 60.00210 * 13 10 9 25 25 H 1.08994 * 109.47360 * 300.00427 * 13 10 9 26 26 H 1.08000 * 120.39950 * 359.97438 * 15 14 13 27 27 H 1.07998 * 119.60887 * 179.97438 * 16 15 14 28 28 H 1.08002 * 120.43045 * 179.73537 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 16 2.4300 -3.8778 -0.0029 11 8 3.1486 -3.8602 1.2229 12 8 3.1484 -3.8581 -1.2288 13 6 1.3245 -5.3161 -0.0034 14 6 2.1448 -6.5802 -0.0051 15 6 2.5301 -7.1749 -1.1976 16 6 3.2814 -8.3336 -1.1608 17 7 3.6319 -8.8747 -0.0100 18 6 3.2884 -8.3341 1.1436 19 17 3.7853 -9.0877 2.6265 20 6 2.5314 -7.1763 1.1846 21 1 -0.4850 0.8401 0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 0.6954 -5.2904 -0.8933 25 1 0.6959 -5.2915 0.8867 26 1 2.2454 -6.7379 -2.1433 27 1 3.5846 -8.8025 -2.0853 28 1 2.2495 -6.7403 2.1316 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905268092.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:40 Heat of formation + Delta-G solvation = -75.185810 kcal Electronic energy + Delta-G solvation = -16443.352305 eV Core-core repulsion = 13418.438973 eV Total energy + Delta-G solvation = -3024.913332 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39992 -37.82649 -37.77365 -36.87689 -35.41137 -35.31321 -32.17258 -31.07907 -29.53711 -25.58786 -24.74623 -23.51210 -19.80015 -19.01890 -18.11481 -18.01126 -17.61405 -16.91121 -16.81941 -16.75500 -16.00689 -15.55091 -15.22059 -14.50258 -14.26604 -14.03800 -13.91377 -13.38562 -13.04063 -12.94998 -12.91288 -12.81756 -12.73382 -12.55996 -12.41480 -12.30036 -11.75376 -11.16840 -10.85113 -10.76968 -10.52077 -10.11586 -8.41105 -6.56335 -0.96179 -0.21508 0.05171 0.67220 1.37069 1.38874 1.52115 2.10035 2.30672 2.46502 2.76430 2.92960 3.19812 3.24246 3.47101 3.74128 3.83407 3.90480 4.29064 4.40931 4.52880 4.69058 4.79060 4.79542 4.99370 5.35906 5.37765 5.76030 6.53516 6.54147 7.14394 8.71246 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.037961 B = 0.004328 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.424707 B = 6467.253378 C = 6734.483877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.058 0.942 9 C -0.421 4.421 10 S 2.405 3.595 11 O -0.984 6.984 12 O -0.980 6.980 13 C -0.563 4.563 14 C -0.041 4.041 15 C -0.157 4.157 16 C 0.120 3.880 17 N -0.495 5.495 18 C 0.159 3.841 19 Cl -0.026 7.026 20 C -0.154 4.154 21 H 0.274 0.726 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.184 0.816 25 H 0.176 0.824 26 H 0.178 0.822 27 H 0.209 0.791 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 -15.130 -0.850 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.601 4.601 8 H 0.077 0.923 9 C -0.554 4.554 10 S 2.594 3.406 11 O -0.982 6.982 12 O -0.977 6.977 13 C -0.690 4.690 14 C -0.050 4.050 15 C -0.178 4.178 16 C -0.036 4.036 17 N -0.207 5.207 18 C -0.004 4.004 19 Cl 0.003 6.997 20 C -0.176 4.176 21 H 0.083 0.917 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.201 0.799 25 H 0.194 0.806 26 H 0.195 0.805 27 H 0.225 0.775 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.302 -15.848 -0.700 15.917 hybrid contribution -0.961 1.550 0.339 1.855 sum 0.341 -14.298 -0.360 14.306 Atomic orbital electron populations 1.69996 1.07175 1.28739 1.48474 1.25722 0.95957 1.02757 0.93171 0.85503 0.79065 0.78554 0.78824 1.19214 1.19091 1.19241 1.20778 0.92940 0.90937 1.55396 0.92338 1.27601 1.10503 1.10197 1.07083 1.08328 0.79482 0.78832 0.73932 1.93448 1.71092 1.86825 1.46801 1.93441 1.70943 1.86797 1.46519 1.29391 1.13814 1.09460 1.16385 1.19612 0.96545 0.94970 0.93905 1.22730 0.98420 0.96828 0.99824 1.23363 0.92386 0.92184 0.95672 1.67073 1.21633 1.33875 0.98147 1.21724 0.96928 0.92505 0.89239 1.98398 1.90244 1.82146 1.28933 1.22073 0.99310 0.95336 1.00870 0.91722 0.88977 0.89215 0.79851 0.80637 0.80489 0.77485 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.53 13.29 21.44 0.28 -49.24 15 2 C 0.03 1.45 5.46 84.65 0.46 1.91 15 3 Si 0.96 42.08 29.54 68.60 2.03 44.11 15 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 7 C -0.56 -30.51 9.13 25.60 0.23 -30.28 15 8 H 0.06 3.23 7.71 -2.91 -0.02 3.21 15 9 C -0.42 -18.74 5.56 71.24 0.40 -18.34 15 10 S 2.40 90.83 4.62 -56.49 -0.26 90.57 15 11 O -0.98 -43.71 18.10 -127.37 -2.30 -46.01 15 12 O -0.98 -42.24 18.10 -127.37 -2.31 -44.55 15 13 C -0.56 -13.18 5.98 71.23 0.43 -12.76 15 14 C -0.04 -1.03 5.18 -19.67 -0.10 -1.13 15 15 C -0.16 -3.38 9.82 22.36 0.22 -3.16 15 16 C 0.12 2.46 11.18 84.66 0.95 3.41 15 17 N -0.50 -12.79 10.34 -186.69 -1.93 -14.72 15 18 C 0.16 4.26 7.27 84.71 0.62 4.87 15 19 Cl -0.03 -0.62 29.11 -2.72 -0.08 -0.70 15 20 C -0.15 -4.02 9.59 22.39 0.21 -3.81 15 21 H 0.27 13.89 8.31 -92.70 -0.77 13.12 15 22 H 0.09 3.91 8.14 -2.40 -0.02 3.89 15 23 H 0.09 3.86 8.14 -2.39 -0.02 3.84 15 24 H 0.18 2.99 8.10 -2.39 -0.02 2.97 15 25 H 0.18 3.12 8.10 -2.39 -0.02 3.10 15 26 H 0.18 2.82 8.06 -2.91 -0.02 2.80 15 27 H 0.21 2.47 8.06 -2.91 -0.02 2.45 15 28 H 0.16 3.77 8.06 -2.91 -0.02 3.75 15 Total: -1.00 -72.70 286.25 0.02 -72.68 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.18 Total: 7.14 kcal Atomic # 6 Polarization: -62.69 SS G_CDS: 3.41 Total: -59.27 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -1.65 Total: -63.96 kcal Atomic # 8 Polarization: -85.95 SS G_CDS: -4.61 Total: -90.56 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 90.83 SS G_CDS: -0.26 Total: 90.57 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -72.70 0.02 -72.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905268092.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.506 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds