Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99831 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00244 * 3 2 1 5 5 H 1.48494 * 109.47103 * 30.00048 * 3 2 1 6 6 H 1.48501 * 109.47275 * 150.00204 * 3 2 1 7 7 C 1.38811 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00505 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47591 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21623 * 119.99969 * 0.28063 * 13 12 11 15 15 C 1.47224 * 119.99940 * 180.27642 * 13 12 11 16 16 N 1.30602 * 125.53370 * 359.69956 * 15 13 12 17 17 C 1.30738 * 115.89674 * 179.77825 * 16 15 13 18 18 Cl 1.73601 * 122.12058 * 180.23979 * 17 16 15 19 19 C 1.34339 * 115.75802 * 0.51421 * 17 16 15 20 20 S 1.71070 * 109.09222 * 359.72722 * 19 17 16 21 21 H 0.96995 * 120.00148 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00237 * 0.02562 * 9 7 2 23 23 H 1.09004 * 109.46697 * 60.00072 * 10 9 7 24 24 H 1.09000 * 109.46990 * 300.00903 * 10 9 7 25 25 H 1.09004 * 109.47066 * 60.00267 * 11 10 9 26 26 H 1.08994 * 109.46974 * 300.00415 * 11 10 9 27 27 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 28 28 H 1.08001 * 125.45309 * 179.71927 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 7 1.7966 -6.0884 -0.0038 13 6 1.1227 -7.2556 0.0012 14 8 -0.0935 -7.2557 0.0020 15 6 1.8589 -8.5306 0.0056 16 7 3.1588 -8.6565 -0.0005 17 6 3.6139 -9.8821 0.0096 18 17 5.3135 -10.2357 0.0099 19 6 2.6828 -10.8505 0.0141 20 16 1.1296 -10.1334 0.0123 21 1 -0.4850 0.8400 0.0004 22 1 0.3557 -2.3881 -0.0005 23 1 2.6855 -3.7149 0.8879 24 1 2.6842 -3.7141 -0.8921 25 1 0.4370 -4.7614 -0.8918 26 1 0.4377 -4.7626 0.8881 27 1 2.7666 -6.0884 -0.0041 28 1 2.8828 -11.9118 0.0180 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132872546.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = 18.645405 kcal Electronic energy + Delta-G solvation = -15661.236512 eV Core-core repulsion = 12672.684758 eV Total energy + Delta-G solvation = -2988.551754 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.024 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53065 -39.26582 -36.92103 -35.80598 -33.93964 -31.56257 -30.76349 -28.11367 -26.48389 -23.72171 -22.24074 -21.52009 -20.14489 -19.06671 -17.57357 -17.16885 -16.08434 -15.98970 -15.63637 -14.99159 -14.58416 -14.25476 -13.78461 -13.76713 -13.20038 -12.89168 -12.53618 -12.07090 -11.51317 -11.47056 -11.14711 -10.87438 -10.81522 -10.78668 -10.27997 -10.25705 -10.09097 -9.76718 -9.27922 -9.04864 -8.88759 -7.00428 -5.80050 -3.10872 -0.28380 0.55048 0.82822 1.75420 1.79648 2.90740 3.02278 3.42936 3.47906 3.49797 3.92250 4.47547 4.57337 4.62028 5.09099 5.44438 5.48753 5.71338 5.90979 6.06079 6.34313 6.63557 6.67003 6.76976 7.38474 7.66386 7.96945 8.37386 9.48932 10.02670 10.37643 11.42463 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.031101 B = 0.003134 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.066948 B = 8932.497565 C = 9812.105707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.109 3.891 12 N -0.691 5.691 13 C 0.594 3.406 14 O -0.524 6.524 15 C 0.002 3.998 16 N -0.421 5.421 17 C 0.110 3.890 18 Cl -0.006 7.006 19 C -0.278 4.278 20 S 0.299 5.701 21 H 0.257 0.743 22 H 0.386 0.614 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.412 0.588 28 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 -25.502 0.060 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.014 4.014 12 N -0.342 5.342 13 C 0.374 3.626 14 O -0.400 6.400 15 C -0.274 4.274 16 N -0.141 5.141 17 C -0.055 4.055 18 Cl 0.022 6.978 19 C -0.420 4.420 20 S 0.554 5.446 21 H 0.066 0.934 22 H 0.220 0.780 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.247 0.753 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.523 -25.245 0.060 25.647 hybrid contribution 1.963 0.594 -0.009 2.051 sum 6.486 -24.652 0.051 25.491 Atomic orbital electron populations 1.69662 1.05142 1.25863 1.57202 1.24780 0.95581 0.97835 1.02644 0.86139 0.78616 0.83546 0.77553 1.21620 1.21687 1.20695 1.19194 0.91078 0.83786 1.43428 0.90974 1.42170 1.05992 0.99489 1.89775 1.20764 0.93414 0.85477 0.98801 1.21758 0.95588 0.80881 1.03166 1.45718 1.11422 1.05109 1.71931 1.16581 0.86233 0.81649 0.78118 1.90898 1.11940 1.86563 1.50590 1.27688 0.91258 0.99598 1.08822 1.66271 1.11528 1.23005 1.13251 1.20399 0.89522 0.87923 1.07679 1.98415 1.08916 1.93415 1.97037 1.26670 0.97645 1.06415 1.11316 1.84199 1.03443 0.96628 1.60324 0.93360 0.77975 0.95515 0.95525 0.90565 0.90565 0.75255 0.78820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.38 15 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 15 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 15 4 H -0.29 -7.04 7.11 56.52 0.40 -6.63 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 15 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 15 9 N -0.73 -18.36 5.60 -59.91 -0.34 -18.70 15 10 C 0.14 2.80 6.37 -4.04 -0.03 2.77 15 11 C 0.11 1.83 5.79 -4.04 -0.02 1.81 15 12 N -0.69 -9.86 5.55 -61.45 -0.34 -10.20 15 13 C 0.59 8.56 7.81 -12.61 -0.10 8.47 15 14 O -0.52 -8.89 16.94 5.26 0.09 -8.80 15 15 C 0.00 0.03 7.46 -14.43 -0.11 -0.08 15 16 N -0.42 -5.01 10.25 -8.61 -0.09 -5.10 15 17 C 0.11 1.10 7.22 -19.39 -0.14 0.96 15 18 Cl -0.01 -0.05 29.20 -51.86 -1.51 -1.57 15 19 C -0.28 -2.07 10.93 29.36 0.32 -1.75 15 20 S 0.30 2.50 23.03 -107.50 -2.48 0.03 15 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 22 H 0.39 10.22 7.67 -40.82 -0.31 9.91 15 23 H 0.03 0.52 8.14 -51.93 -0.42 0.09 15 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 15 27 H 0.41 5.26 8.13 -40.82 -0.33 4.93 15 28 H 0.19 0.82 8.06 -52.49 -0.42 0.40 15 LS Contribution 288.13 15.07 4.34 4.34 Total: -1.00 -31.84 288.13 -7.25 -39.08 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -2.30 Total: 6.22 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -0.32 Total: 4.79 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.04 Total: -61.38 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.48 Total: 0.03 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.51 Total: -1.57 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.84 -7.25 -39.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132872546.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.730 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds