Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99831 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00244 * 3 2 1 5 5 H 1.48494 * 109.47103 * 30.00048 * 3 2 1 6 6 H 1.48501 * 109.47275 * 150.00204 * 3 2 1 7 7 C 1.38811 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00505 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47591 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21623 * 119.99969 * 0.28063 * 13 12 11 15 15 C 1.47224 * 119.99940 * 180.27642 * 13 12 11 16 16 N 1.30602 * 125.53370 * 359.69956 * 15 13 12 17 17 C 1.30738 * 115.89674 * 179.77825 * 16 15 13 18 18 Cl 1.73601 * 122.12058 * 180.23979 * 17 16 15 19 19 C 1.34339 * 115.75802 * 0.51421 * 17 16 15 20 20 S 1.71070 * 109.09222 * 359.72722 * 19 17 16 21 21 H 0.96995 * 120.00148 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00237 * 0.02562 * 9 7 2 23 23 H 1.09004 * 109.46697 * 60.00072 * 10 9 7 24 24 H 1.09000 * 109.46990 * 300.00903 * 10 9 7 25 25 H 1.09004 * 109.47066 * 60.00267 * 11 10 9 26 26 H 1.08994 * 109.46974 * 300.00415 * 11 10 9 27 27 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 28 28 H 1.08001 * 125.45309 * 179.71927 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 7 1.7966 -6.0884 -0.0038 13 6 1.1227 -7.2556 0.0012 14 8 -0.0935 -7.2557 0.0020 15 6 1.8589 -8.5306 0.0056 16 7 3.1588 -8.6565 -0.0005 17 6 3.6139 -9.8821 0.0096 18 17 5.3135 -10.2357 0.0099 19 6 2.6828 -10.8505 0.0141 20 16 1.1296 -10.1334 0.0123 21 1 -0.4850 0.8400 0.0004 22 1 0.3557 -2.3881 -0.0005 23 1 2.6855 -3.7149 0.8879 24 1 2.6842 -3.7141 -0.8921 25 1 0.4370 -4.7614 -0.8918 26 1 0.4377 -4.7626 0.8881 27 1 2.7666 -6.0884 -0.0041 28 1 2.8828 -11.9118 0.0180 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132872546.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -5.672404 kcal Electronic energy + Delta-G solvation = -15662.291012 eV Core-core repulsion = 12672.684758 eV Total energy + Delta-G solvation = -2989.606254 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.024 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43113 -40.30223 -37.62329 -37.38183 -35.59173 -33.26428 -31.81709 -29.58239 -27.56545 -25.52879 -23.43303 -22.93716 -21.12391 -19.93516 -19.26351 -18.39637 -17.14439 -17.05527 -16.69684 -16.49451 -16.08758 -15.47061 -15.06700 -15.06144 -14.89071 -14.45905 -13.21382 -13.16301 -13.05044 -12.78144 -12.66605 -12.54868 -12.15902 -12.08816 -11.93461 -11.77128 -11.15213 -10.99831 -10.96560 -10.35071 -9.89809 -9.06647 -7.96644 -5.27944 -1.05205 -0.16339 0.09908 0.92273 1.09567 1.49211 1.51374 1.59818 1.88624 1.93395 2.57087 2.99658 3.37484 3.72028 3.94014 3.99231 4.15177 4.19559 4.38453 4.55983 4.94361 5.10328 5.20826 5.48913 5.94677 6.24189 6.29420 6.85810 7.30928 8.01629 8.25509 9.26743 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.031101 B = 0.003134 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.066948 B = 8932.497565 C = 9812.105707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.249 4.249 8 H 0.081 0.919 9 N -0.745 5.745 10 C 0.148 3.852 11 C 0.127 3.873 12 N -0.688 5.688 13 C 0.597 3.403 14 O -0.556 6.556 15 C -0.043 4.043 16 N -0.434 5.434 17 C 0.082 3.918 18 Cl -0.003 7.003 19 C -0.248 4.248 20 S 0.360 5.640 21 H 0.253 0.747 22 H 0.376 0.624 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.419 0.581 28 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 -27.384 0.076 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.381 4.381 8 H 0.099 0.901 9 N -0.388 5.388 10 C 0.021 3.979 11 C 0.003 3.997 12 N -0.339 5.339 13 C 0.380 3.620 14 O -0.435 6.435 15 C -0.317 4.317 16 N -0.154 5.154 17 C -0.083 4.083 18 Cl 0.025 6.975 19 C -0.391 4.391 20 S 0.614 5.386 21 H 0.061 0.939 22 H 0.208 0.792 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.257 0.743 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.819 -27.158 0.075 27.775 hybrid contribution 1.609 0.957 -0.015 1.872 sum 7.428 -26.201 0.060 27.234 Atomic orbital electron populations 1.69823 1.06715 1.26309 1.59007 1.25654 0.96475 1.01381 1.03288 0.85065 0.77674 0.79041 0.77485 1.21277 1.22155 1.19240 1.19628 0.91686 0.84877 1.41886 0.90115 1.42373 1.05799 1.00873 1.89796 1.20830 0.93630 0.84214 0.99269 1.21338 0.94746 0.81303 1.02331 1.45547 1.11653 1.04465 1.72233 1.16837 0.85967 0.82355 0.76851 1.90870 1.13311 1.87231 1.52071 1.27110 0.91742 1.00069 1.12759 1.66174 1.11783 1.24533 1.12895 1.20557 0.90175 0.87954 1.09582 1.98414 1.08713 1.93255 1.97162 1.27184 0.96756 1.07852 1.07278 1.84055 1.02875 0.93616 1.58057 0.93857 0.79207 0.94627 0.94629 0.91479 0.91474 0.74342 0.75155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.46 13.06 21.65 0.28 -59.17 15 2 C -0.08 -4.34 5.50 84.86 0.47 -3.87 15 3 Si 0.98 45.91 29.55 68.60 2.03 47.94 15 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 15 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 15 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 7 C -0.25 -13.86 9.99 84.03 0.84 -13.02 15 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 15 9 N -0.74 -37.87 5.60 -343.45 -1.92 -39.79 15 10 C 0.15 5.72 6.37 86.38 0.55 6.27 15 11 C 0.13 4.31 5.79 86.38 0.50 4.81 15 12 N -0.69 -19.60 5.55 -466.58 -2.59 -22.19 15 13 C 0.60 17.17 7.81 86.60 0.68 17.85 15 14 O -0.56 -19.01 16.94 -4.10 -0.07 -19.08 15 15 C -0.04 -0.99 7.46 87.24 0.65 -0.34 15 16 N -0.43 -9.78 10.25 -181.16 -1.86 -11.64 15 17 C 0.08 1.47 7.22 83.96 0.61 2.07 15 18 Cl 0.00 -0.06 29.20 -2.72 -0.08 -0.14 15 19 C -0.25 -2.84 10.93 66.93 0.73 -2.11 15 20 S 0.36 5.10 23.03 -56.49 -1.30 3.80 15 21 H 0.25 15.00 8.31 -92.71 -0.77 14.23 15 22 H 0.38 20.40 7.67 -92.71 -0.71 19.69 15 23 H 0.04 1.34 8.14 -2.38 -0.02 1.32 15 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 15 25 H 0.07 2.40 8.14 -2.38 -0.02 2.38 15 26 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 27 H 0.42 10.59 8.13 -92.71 -0.75 9.83 15 28 H 0.23 0.80 8.06 -2.91 -0.02 0.78 15 Total: -1.00 -68.48 288.13 -0.73 -69.21 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.24 Total: 19.40 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.02 Total: 11.66 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -6.09 Total: -132.79 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.07 Total: -19.08 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.30 Total: 3.80 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -0.08 Total: -0.14 kcal Total: -68.48 -0.73 -69.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132872546.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.534 kcal (2) G-P(sol) polarization free energy of solvation -68.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds