Wall clock time and date at job start Mon Mar 30 2020 01:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00091 * 2 1 4 4 C 1.50698 * 109.47196 * 293.95390 * 3 2 1 5 5 H 1.08009 * 120.00061 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00318 * 180.02562 * 4 3 2 7 7 N 1.31522 * 119.99832 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00287 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47063 * 89.99839 * 8 6 4 10 10 H 1.48495 * 109.47344 * 210.00056 * 8 6 4 11 11 H 1.48497 * 109.47121 * 329.99886 * 8 6 4 12 12 C 1.46902 * 110.99617 * 123.95641 * 2 1 3 13 13 C 1.50690 * 109.47344 * 66.04701 * 12 2 1 14 14 C 1.38317 * 120.05572 * 270.01939 * 13 12 2 15 15 C 1.37804 * 119.95213 * 180.19574 * 14 13 12 16 16 C 1.39618 * 120.42262 * 359.82056 * 15 14 13 17 17 C 1.38375 * 119.38784 * 359.96550 * 16 15 14 18 18 C 1.38048 * 120.05847 * 90.00192 * 13 12 2 19 19 C 1.50801 * 122.01473 * 180.32311 * 17 16 15 20 20 C 1.53043 * 109.64972 * 344.39787 * 19 17 16 21 21 C 1.53384 * 107.92118 * 47.32616 * 20 19 17 22 22 N 1.39403 * 117.65157 * 179.69907 * 16 15 14 23 23 C 1.46903 * 111.00313 * 34.68180 * 22 16 15 24 24 H 1.08997 * 109.47435 * 296.04830 * 1 2 3 25 25 H 1.09003 * 109.47147 * 56.05256 * 1 2 3 26 26 H 1.09004 * 109.46884 * 176.04442 * 1 2 3 27 27 H 1.09000 * 109.47076 * 53.95330 * 3 2 1 28 28 H 1.08998 * 109.47192 * 173.95480 * 3 2 1 29 29 H 0.96989 * 119.99937 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46997 * 306.04062 * 12 2 1 31 31 H 1.09002 * 109.46657 * 186.04663 * 12 2 1 32 32 H 1.08001 * 120.02437 * 0.08263 * 14 13 12 33 33 H 1.07997 * 119.78915 * 180.02562 * 15 14 13 34 34 H 1.08007 * 119.75679 * 0.02562 * 18 13 12 35 35 H 1.08997 * 109.44007 * 104.45728 * 19 17 16 36 36 H 1.09004 * 109.43686 * 224.38014 * 19 17 16 37 37 H 1.08999 * 109.76802 * 166.92827 * 20 19 17 38 38 H 1.08993 * 109.77236 * 287.66097 * 20 19 17 39 39 H 1.09000 * 109.60796 * 51.48673 * 21 20 19 40 40 H 1.08995 * 109.60654 * 171.81608 * 21 20 19 41 41 H 1.08998 * 109.46991 * 56.04199 * 23 22 16 42 42 H 1.08999 * 109.47524 * 176.04843 * 23 22 16 43 43 H 1.08996 * 109.46877 * 296.05195 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0489 6 6 2.0277 3.3491 -1.5289 7 7 2.7129 4.0015 -0.6154 8 14 1.5839 4.1864 -3.1387 9 1 0.2718 4.8673 -2.9972 10 1 2.6266 5.1870 -3.4800 11 1 1.5005 3.1705 -4.2185 12 6 1.9953 -0.7661 1.1376 13 6 1.6369 -2.2204 0.9728 14 6 0.4504 -2.7047 1.4934 15 6 0.1266 -4.0359 1.3450 16 6 0.9876 -4.9017 0.6679 17 6 2.1711 -4.4110 0.1453 18 6 2.4918 -3.0716 0.3018 19 6 3.1406 -5.2914 -0.6025 20 6 2.8102 -6.7621 -0.3372 21 6 1.2987 -6.9468 -0.5207 22 7 0.6059 -6.2379 0.5572 23 6 -0.8512 -6.3593 0.4155 24 1 -0.3634 0.4513 0.9232 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0709 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3444 0.1082 29 1 2.9874 4.9175 -0.7773 30 1 1.5610 -0.3873 2.0628 31 1 3.0796 -0.6612 1.1756 32 1 -0.2208 -2.0404 2.0174 33 1 -0.8006 -4.4112 1.7521 34 1 3.4178 -2.6912 -0.1037 35 1 3.0643 -5.0894 -1.6709 36 1 4.1556 -5.0815 -0.2652 37 1 3.3474 -7.3940 -1.0444 38 1 3.0938 -7.0256 0.6817 39 1 0.9941 -6.5361 -1.4833 40 1 1.0524 -8.0078 -0.4814 41 1 -1.1834 -5.7703 -0.4394 42 1 -1.1154 -7.4054 0.2608 43 1 -1.3360 -5.9920 1.3200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138353881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:22 Heat of formation + Delta-G solvation = 31.531157 kcal Electronic energy + Delta-G solvation = -21054.290102 eV Core-core repulsion = 18098.902289 eV Total energy + Delta-G solvation = -2955.387813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51129 -37.67734 -35.68027 -34.40189 -32.57580 -30.61622 -29.98769 -27.18252 -27.14940 -26.49392 -24.45805 -23.41203 -22.36615 -21.43393 -20.26512 -18.99796 -16.90375 -16.40682 -16.16693 -15.53977 -14.92148 -14.54789 -14.41846 -14.21799 -14.07279 -13.82024 -13.42822 -13.29589 -12.98959 -12.85111 -12.36741 -12.07625 -11.92734 -11.79086 -11.53843 -11.26799 -11.19892 -10.92477 -10.88109 -10.82822 -10.58973 -10.43857 -10.32398 -9.81496 -9.65519 -9.18415 -8.48323 -8.42006 -7.52307 -7.16311 -6.00670 -4.01761 1.59353 1.64272 3.32906 3.38956 3.43712 3.58225 4.01104 4.45441 4.57842 4.70137 4.81434 4.88802 5.15177 5.18846 5.24897 5.27806 5.31253 5.35678 5.40500 5.47851 5.53668 5.63322 5.65261 5.74892 5.79224 5.91327 5.98896 6.08056 6.18032 6.25401 6.32670 6.35354 6.44491 6.60904 6.79859 6.92608 7.03055 7.05387 7.32103 7.37165 7.42281 7.82801 8.11434 8.24312 8.58193 9.06089 9.62249 11.10242 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.028347 B = 0.003648 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.512439 B = 7673.775982 C = 7860.204295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.092 3.908 13 C -0.085 4.085 14 C -0.090 4.090 15 C -0.162 4.162 16 C 0.113 3.887 17 C -0.125 4.125 18 C -0.073 4.073 19 C -0.077 4.077 20 C -0.121 4.121 21 C 0.057 3.943 22 N -0.499 5.499 23 C 0.025 3.975 24 H 0.009 0.991 25 H 0.072 0.928 26 H 0.048 0.952 27 H -0.009 1.009 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.452 -21.591 2.694 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.258 5.258 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.036 4.036 13 C -0.086 4.086 14 C -0.109 4.109 15 C -0.183 4.183 16 C 0.015 3.985 17 C -0.128 4.128 18 C -0.092 4.092 19 C -0.115 4.115 20 C -0.159 4.159 21 C -0.070 4.070 22 N -0.213 5.213 23 C -0.121 4.121 24 H 0.027 0.973 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.008 0.992 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.099 -21.939 2.690 22.320 hybrid contribution -0.718 1.382 -0.638 1.683 sum -3.817 -20.557 2.052 21.009 Atomic orbital electron populations 1.22257 0.89028 0.99695 1.00241 1.62139 1.06986 1.17448 1.39272 1.19754 0.95392 0.81540 0.96628 1.21168 1.34663 0.96878 1.01690 0.91892 1.24989 0.95325 0.97351 0.96985 1.69960 1.38451 1.11411 1.34115 0.86504 0.77969 0.79215 0.83780 1.20768 1.21254 1.19782 1.20999 1.00244 0.89298 0.93021 1.19795 0.94576 0.95766 0.98479 1.20851 0.96252 0.94647 0.99161 1.20983 1.00136 0.93461 1.03670 1.18459 0.94755 0.87180 0.98115 1.19437 0.96078 0.94675 1.02642 1.20843 0.99684 0.91602 0.97069 1.20498 0.98060 0.93199 0.99694 1.21700 0.94714 0.96640 1.02816 1.22136 0.94629 0.98464 0.91729 1.58183 1.07199 1.11722 1.44194 1.22500 0.85879 1.01957 1.01763 0.97273 0.90940 0.93352 0.99153 0.95210 0.92954 0.95225 0.90705 0.86431 0.86161 0.85922 0.90890 0.90532 0.90738 0.90709 0.93753 0.90138 0.94294 0.91043 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 8.96 60.06 0.54 1.28 16 2 N -0.53 -11.91 4.74 -245.83 -1.17 -13.07 16 3 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 4 C -0.51 -14.42 8.46 -34.44 -0.29 -14.71 16 5 H 0.06 1.79 7.12 -52.48 -0.37 1.41 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.09 1.74 5.12 -4.98 -0.03 1.71 16 13 C -0.08 -1.40 4.88 -104.67 -0.51 -1.91 16 14 C -0.09 -1.35 7.96 -39.71 -0.32 -1.66 16 15 C -0.16 -2.20 9.03 -39.23 -0.35 -2.56 16 16 C 0.11 1.54 5.81 -83.85 -0.49 1.05 16 17 C -0.13 -1.75 5.74 -104.38 -0.60 -2.35 16 18 C -0.07 -1.14 9.29 -39.51 -0.37 -1.50 16 19 C -0.08 -0.86 5.81 -27.81 -0.16 -1.02 16 20 C -0.12 -1.11 6.19 -26.51 -0.16 -1.28 16 21 C 0.06 0.54 5.46 -3.88 -0.02 0.52 16 22 N -0.50 -5.68 4.78 -179.13 -0.86 -6.54 16 23 C 0.03 0.23 8.82 60.07 0.53 0.76 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.07 1.58 6.76 -51.93 -0.35 1.22 16 26 H 0.05 0.88 6.17 -51.93 -0.32 0.56 16 27 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 28 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 31 H 0.07 1.40 7.88 -51.93 -0.41 0.99 16 32 H 0.12 1.65 8.03 -52.49 -0.42 1.23 16 33 H 0.12 1.38 5.98 -52.49 -0.31 1.07 16 34 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.44 8.11 -51.93 -0.42 0.02 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 42 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 43 H 0.08 0.66 6.31 -51.93 -0.33 0.33 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -31.08 337.23 -10.70 -41.78 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -7.13 Total: -2.70 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -2.35 Total: -15.14 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -1.29 Total: -45.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.08 -10.70 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138353881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.316 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds