Wall clock time and date at job start Mon Mar 30 2020 01:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 11 11 O 1.21281 * 119.99992 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99830 * 179.97438 * 10 9 7 13 13 C 1.47023 * 125.64969 * 0.02562 * 12 10 9 14 14 C 1.54319 * 107.27198 * 178.90178 * 13 12 10 15 15 C 1.55157 * 102.94410 * 337.80615 * 14 13 12 16 16 H 1.08997 * 111.00770 * 277.42895 * 15 14 13 17 17 C 1.53004 * 111.00440 * 153.57209 * 15 14 13 18 18 Br 1.96595 * 109.46731 * 66.45827 * 17 15 14 19 19 C 1.47426 * 125.64461 * 179.71611 * 12 10 9 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.08991 * 109.88044 * 298.32124 * 13 12 10 24 24 H 1.09001 * 109.87811 * 59.48387 * 13 12 10 25 25 H 1.08998 * 110.72104 * 96.17049 * 14 13 12 26 26 H 1.08996 * 110.72143 * 219.44208 * 14 13 12 27 27 H 1.09005 * 109.46965 * 186.45531 * 17 15 14 28 28 H 1.08995 * 109.47357 * 306.45517 * 17 15 14 29 29 H 1.08998 * 110.37093 * 323.00092 * 19 12 10 30 30 H 1.08996 * 110.36572 * 85.33182 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0079 11 8 3.4226 -3.4230 -0.0132 12 7 1.7809 -4.9153 -0.0087 13 6 0.3689 -5.3249 -0.0033 14 6 0.3392 -6.8675 -0.0348 15 6 1.7267 -7.2298 -0.6271 16 1 1.7156 -7.1667 -1.7152 17 6 2.1748 -8.6179 -0.1650 18 35 0.9819 -9.9801 -0.9307 19 6 2.6239 -6.1246 -0.0215 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 -0.1186 -4.9631 0.9019 24 1 -0.1360 -4.9264 -0.8833 25 1 0.2321 -7.2718 0.9718 26 1 -0.4617 -7.2247 -0.6821 27 1 3.1962 -8.7999 -0.4994 28 1 2.1340 -8.6693 0.9230 29 1 3.5045 -5.9667 -0.6442 30 1 2.9188 -6.3923 0.9931 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:56 Heat of formation + Delta-G solvation = -48.462136 kcal Electronic energy + Delta-G solvation = -13971.865215 eV Core-core repulsion = 11426.763246 eV Total energy + Delta-G solvation = -2545.101969 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 275.026 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.48483 -37.11387 -33.20889 -32.91381 -30.35805 -29.41255 -28.69113 -25.70257 -23.53621 -22.41112 -20.44820 -18.65962 -16.48506 -16.40280 -15.63561 -14.84303 -14.62687 -14.10262 -13.75361 -13.58675 -13.05592 -12.63960 -12.28884 -12.10686 -11.93279 -11.32743 -11.18235 -10.95958 -10.80761 -10.73226 -10.62588 -10.08789 -10.02649 -9.95314 -9.24313 -8.69680 -8.44411 -8.11564 -6.06292 -4.05934 1.45857 3.33317 3.40176 3.47446 3.59213 3.65075 4.32306 4.39804 4.48766 4.63493 4.93925 5.12428 5.19468 5.32089 5.40344 5.46174 5.75572 5.77082 5.96766 6.04113 6.15323 6.18397 6.83766 7.19615 7.32420 7.96058 8.01642 8.37605 9.05007 9.17289 9.59217 11.06132 Molecular weight = 275.03amu Principal moments of inertia in cm(-1) A = 0.071131 B = 0.003553 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.547718 B = 7879.770065 C = 8176.164702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.011 3.989 10 C 0.531 3.469 11 O -0.544 6.544 12 N -0.634 5.634 13 C 0.106 3.894 14 C -0.126 4.126 15 C -0.106 4.106 16 H 0.095 0.905 17 C -0.063 4.063 18 Br -0.165 7.165 19 C 0.113 3.887 20 H 0.261 0.739 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 -21.819 -0.767 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.028 4.028 10 C 0.324 3.676 11 O -0.419 6.419 12 N -0.372 5.372 13 C -0.017 4.017 14 C -0.164 4.164 15 C -0.126 4.126 16 H 0.114 0.886 17 C -0.179 4.179 18 Br -0.084 7.084 19 C -0.011 4.011 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.816 -21.923 -1.019 21.962 hybrid contribution 0.504 1.080 0.180 1.205 sum -0.312 -20.843 -0.839 20.862 Atomic orbital electron populations 1.69970 1.06042 1.26815 1.51212 1.25003 0.94912 0.99480 0.95179 0.86377 0.80341 0.82961 0.77485 1.19467 1.20980 1.20982 1.21228 0.94311 0.89128 1.50061 0.90650 1.19224 0.94005 0.90161 0.99397 1.21856 0.90898 0.81851 0.73040 1.90544 1.18066 1.83704 1.49634 1.48838 1.06543 1.05258 1.76569 1.21909 0.83636 0.93743 1.02440 1.22770 0.96667 0.95191 1.01788 1.22524 0.96568 0.91737 1.01782 0.88631 1.24690 0.98603 0.91599 1.03005 1.97384 1.67957 1.56544 1.86552 1.21987 0.94444 0.84454 1.00222 0.92947 0.93485 0.93444 0.91226 0.91226 0.90510 0.89627 0.87918 0.87918 0.90588 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.91 8.92 -34.44 -0.31 -15.22 16 8 H 0.08 2.31 6.75 -52.49 -0.35 1.95 16 9 C 0.01 0.29 4.65 -29.03 -0.14 0.15 16 10 C 0.53 12.41 7.84 -10.99 -0.09 12.33 16 11 O -0.54 -14.47 15.72 5.56 0.09 -14.38 16 12 N -0.63 -11.26 3.33 -170.66 -0.57 -11.82 16 13 C 0.11 1.50 6.49 -3.07 -0.02 1.48 16 14 C -0.13 -1.30 5.97 -24.90 -0.15 -1.45 16 15 C -0.11 -1.08 3.08 -88.58 -0.27 -1.36 16 16 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 17 C -0.06 -0.50 6.08 37.16 0.23 -0.27 16 18 Br -0.16 -1.49 33.51 -68.01 -2.28 -3.77 16 19 C 0.11 1.57 6.37 -2.64 -0.02 1.55 16 20 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 21 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 22 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.08 0.71 8.01 -51.93 -0.42 0.29 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 29 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 30 H 0.06 0.78 8.03 -51.93 -0.42 0.37 16 LS Contribution 275.81 15.07 4.16 4.16 Total: -1.00 -32.46 275.81 -7.87 -40.32 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: -4.12 Total: -4.64 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.86 Total: -1.31 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.17 Total: -37.54 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.38 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 35 Polarization: -1.49 SS G_CDS: -2.28 Total: -3.77 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.46 -7.87 -40.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.139 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds