Wall clock time and date at job start Mon Mar 30 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 11 11 O 1.21281 * 119.99992 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99830 * 179.97438 * 10 9 7 13 13 C 1.47023 * 125.64969 * 0.02562 * 12 10 9 14 14 C 1.54319 * 107.27198 * 178.90178 * 13 12 10 15 15 C 1.55157 * 102.94410 * 337.80615 * 14 13 12 16 16 H 1.08997 * 111.00770 * 277.42895 * 15 14 13 17 17 C 1.53004 * 111.00440 * 153.57209 * 15 14 13 18 18 Br 1.96595 * 109.46731 * 66.45827 * 17 15 14 19 19 C 1.47426 * 125.64461 * 179.71611 * 12 10 9 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.08991 * 109.88044 * 298.32124 * 13 12 10 24 24 H 1.09001 * 109.87811 * 59.48387 * 13 12 10 25 25 H 1.08998 * 110.72104 * 96.17049 * 14 13 12 26 26 H 1.08996 * 110.72143 * 219.44208 * 14 13 12 27 27 H 1.09005 * 109.46965 * 186.45531 * 17 15 14 28 28 H 1.08995 * 109.47357 * 306.45517 * 17 15 14 29 29 H 1.08998 * 110.37093 * 323.00092 * 19 12 10 30 30 H 1.08996 * 110.36572 * 85.33182 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0079 11 8 3.4226 -3.4230 -0.0132 12 7 1.7809 -4.9153 -0.0087 13 6 0.3689 -5.3249 -0.0033 14 6 0.3392 -6.8675 -0.0348 15 6 1.7267 -7.2298 -0.6271 16 1 1.7156 -7.1667 -1.7152 17 6 2.1748 -8.6179 -0.1650 18 35 0.9819 -9.9801 -0.9307 19 6 2.6239 -6.1246 -0.0215 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 -0.1186 -4.9631 0.9019 24 1 -0.1360 -4.9264 -0.8833 25 1 0.2321 -7.2718 0.9718 26 1 -0.4617 -7.2247 -0.6821 27 1 3.1962 -8.7999 -0.4994 28 1 2.1340 -8.6693 0.9230 29 1 3.5045 -5.9667 -0.6442 30 1 2.9188 -6.3923 0.9931 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:55 Heat of formation + Delta-G solvation = -69.047324 kcal Electronic energy + Delta-G solvation = -13972.757856 eV Core-core repulsion = 11426.763246 eV Total energy + Delta-G solvation = -2545.994610 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 275.026 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.94100 -38.62671 -35.14161 -34.31621 -31.53209 -30.85167 -30.07571 -27.00144 -25.19127 -23.80984 -21.36844 -20.21287 -18.58379 -17.78510 -17.22652 -16.70037 -16.12507 -15.47245 -14.92231 -14.80119 -14.31988 -14.10058 -13.75123 -13.52436 -13.23466 -12.97012 -12.79547 -12.60273 -12.30984 -12.07758 -11.83577 -11.68784 -11.43316 -10.81710 -10.69964 -10.64507 -10.53514 -9.59349 -8.27211 -6.35222 0.79159 1.39070 1.39522 1.54731 1.80862 2.13388 2.43482 3.07772 3.43508 3.50988 3.71614 4.13780 4.24604 4.27723 4.32677 4.49760 4.63859 4.72357 4.87195 4.92620 5.01203 5.06725 5.22162 5.26594 5.48416 5.72466 6.03104 6.56536 6.78981 7.30692 7.41143 8.85242 Molecular weight = 275.03amu Principal moments of inertia in cm(-1) A = 0.071131 B = 0.003553 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.547718 B = 7879.770065 C = 8176.164702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.054 0.946 9 C 0.017 3.983 10 C 0.529 3.471 11 O -0.586 6.586 12 N -0.629 5.629 13 C 0.096 3.904 14 C -0.113 4.113 15 C -0.092 4.092 16 H 0.093 0.907 17 C -0.056 4.056 18 Br -0.170 7.170 19 C 0.107 3.893 20 H 0.268 0.732 21 H 0.039 0.961 22 H 0.038 0.962 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.063 0.937 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.229 -22.984 -0.560 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.072 0.928 9 C -0.022 4.022 10 C 0.321 3.679 11 O -0.466 6.466 12 N -0.364 5.364 13 C -0.027 4.027 14 C -0.151 4.151 15 C -0.112 4.112 16 H 0.112 0.888 17 C -0.172 4.172 18 Br -0.090 7.090 19 C -0.016 4.016 20 H 0.077 0.923 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.082 0.918 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.137 -23.147 -0.814 23.190 hybrid contribution 0.532 1.382 0.114 1.485 sum -0.605 -21.765 -0.699 21.785 Atomic orbital electron populations 1.70039 1.07157 1.28118 1.51046 1.25801 0.95869 1.02775 0.94310 0.85385 0.78571 0.78688 0.78335 1.19980 1.19623 1.19580 1.21413 0.93675 0.91293 1.51420 0.92755 1.19003 0.94051 0.90686 0.98443 1.21245 0.89654 0.83424 0.73579 1.90508 1.19194 1.84856 1.52081 1.48675 1.09044 1.04724 1.73967 1.22202 0.81338 0.96823 1.02298 1.22764 0.97175 0.91732 1.03399 1.22399 0.95446 0.91858 1.01463 0.88839 1.24667 0.99002 0.89570 1.03931 1.97406 1.68214 1.56616 1.86774 1.22252 0.94268 0.83724 1.01374 0.92304 0.94290 0.94369 0.91232 0.91652 0.88618 0.87937 0.86501 0.86278 0.91798 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 13.29 21.45 0.28 -54.20 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.54 -32.56 8.92 25.60 0.23 -32.34 16 8 H 0.05 3.45 6.75 -2.91 -0.02 3.43 16 9 C 0.02 0.93 4.65 29.10 0.14 1.07 16 10 C 0.53 25.44 7.84 87.66 0.69 26.12 16 11 O -0.59 -32.25 15.72 -3.03 -0.05 -32.30 16 12 N -0.63 -22.22 3.33 -812.23 -2.70 -24.92 16 13 C 0.10 2.60 6.49 86.73 0.56 3.16 16 14 C -0.11 -2.00 5.97 31.78 0.19 -1.81 16 15 C -0.09 -1.64 3.08 -9.47 -0.03 -1.67 16 16 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 17 C -0.06 -0.70 6.08 71.98 0.44 -0.26 16 18 Br -0.17 -2.61 33.51 -20.37 -0.68 -3.29 16 19 C 0.11 2.81 6.37 86.78 0.55 3.36 16 20 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 21 H 0.04 2.10 8.14 -2.39 -0.02 2.09 16 22 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.10 1.40 8.01 -2.39 -0.02 1.39 16 26 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.12 1.21 8.14 -2.38 -0.02 1.20 16 28 H 0.12 1.19 8.11 -2.39 -0.02 1.17 16 29 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 30 H 0.08 1.81 8.03 -2.39 -0.02 1.79 16 Total: -1.00 -70.98 275.81 3.22 -67.76 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: 1.12 Total: 0.50 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 3.23 Total: -1.25 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.42 Total: -79.12 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.05 Total: -32.30 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 35 Polarization: -2.61 SS G_CDS: -0.68 Total: -3.29 kcal Total: -70.98 3.22 -67.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.292 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds