Wall clock time and date at job start Mon Mar 30 2020 01:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99788 * 2 1 4 4 H 1.48507 * 109.47120 * 239.99841 * 3 2 1 5 5 H 1.48490 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46941 * 120.00259 * 3 2 1 7 7 C 1.37877 * 120.00193 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.84887 * 359.97438 * 7 2 1 9 9 C 1.53228 * 108.53589 * 231.32614 * 8 7 2 10 10 C 1.52952 * 109.40786 * 305.37245 * 9 8 7 11 11 H 1.08997 * 109.41476 * 303.49453 * 10 9 8 12 12 N 1.46501 * 109.41749 * 183.70332 * 10 9 8 13 13 C 1.34773 * 119.99862 * 84.64631 * 12 10 9 14 14 O 1.21277 * 120.00236 * 0.02562 * 13 12 10 15 15 C 1.50703 * 120.00082 * 180.02562 * 13 12 10 16 16 Br 1.96595 * 109.47174 * 180.02562 * 15 13 12 17 17 C 1.52966 * 109.81570 * 63.60038 * 10 9 8 18 18 C 1.51268 * 120.84790 * 179.97438 * 7 2 1 19 19 H 0.96999 * 119.99887 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.62592 * 111.61555 * 8 7 2 21 21 H 1.09001 * 109.78825 * 351.13553 * 8 7 2 22 22 H 1.09003 * 109.47999 * 185.38997 * 9 8 7 23 23 H 1.09002 * 109.48492 * 65.35753 * 9 8 7 24 24 H 0.97000 * 119.99823 * 264.65237 * 12 10 9 25 25 H 1.09002 * 109.47214 * 300.00228 * 15 13 12 26 26 H 1.08997 * 109.47314 * 59.99977 * 15 13 12 27 27 H 1.08997 * 109.47972 * 56.37851 * 17 10 9 28 28 H 1.08996 * 109.48230 * 176.42423 * 17 10 9 29 29 H 1.08992 * 109.62819 * 8.95683 * 18 7 2 30 30 H 1.09002 * 109.62503 * 248.38475 * 18 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 6 1.2678 -2.5151 -0.0005 9 6 1.8238 -3.3830 1.1333 10 6 3.3406 -3.5073 0.9811 11 1 3.5740 -3.9122 -0.0037 12 7 3.8614 -4.4083 2.0123 13 6 3.8541 -5.7406 1.8093 14 8 3.4169 -6.1937 0.7727 15 6 4.3892 -6.6675 2.8703 16 35 4.2311 -8.5281 2.2554 17 6 3.9915 -2.1313 1.1324 18 6 3.5171 -1.2164 -0.0011 19 1 -0.4850 0.8400 -0.0004 20 1 1.4194 -3.0188 -0.9552 21 1 0.2030 -2.3438 0.1580 22 1 1.3714 -4.3737 1.0880 23 1 1.5914 -2.9205 2.0926 24 1 4.2113 -4.0458 2.8412 25 1 5.4372 -6.4357 3.0602 26 1 3.8163 -6.5379 3.7885 27 1 3.7078 -1.6985 2.0916 28 1 5.0756 -2.2350 1.0864 29 1 3.8982 -0.2078 0.1588 30 1 3.8772 -1.5997 -0.9559 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144199203.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:44 Heat of formation + Delta-G solvation = -54.617888 kcal Electronic energy + Delta-G solvation = -14289.739403 eV Core-core repulsion = 11744.370500 eV Total energy + Delta-G solvation = -2545.368902 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 275.026 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.55925 -36.82098 -33.79234 -32.10529 -31.34874 -29.68798 -28.27419 -26.47720 -22.14995 -21.69291 -20.12869 -19.53564 -17.05675 -16.06972 -15.74952 -15.36430 -14.47435 -13.75925 -13.33133 -13.06460 -12.76934 -12.68818 -12.17569 -12.06475 -11.60967 -11.08616 -10.84202 -10.76521 -10.39773 -10.00870 -10.00082 -9.97048 -9.78470 -9.69406 -9.14180 -8.86998 -8.50532 -8.37702 -6.12624 -4.04435 1.40661 2.72944 3.24749 3.32605 3.33096 3.38629 4.34894 4.70836 4.76819 4.95091 5.14213 5.60360 5.81229 6.09625 6.41059 6.43510 6.62867 6.70166 6.75317 6.92560 7.04445 7.16929 7.33838 7.59920 7.69056 7.76884 7.84569 8.35887 8.39340 8.93802 9.50929 10.97001 Molecular weight = 275.03amu Principal moments of inertia in cm(-1) A = 0.064346 B = 0.004091 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.042302 B = 6842.371461 C = 7086.817653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.492 4.492 8 C 0.012 3.988 9 C -0.114 4.114 10 C 0.155 3.845 11 H 0.080 0.920 12 N -0.719 5.719 13 C 0.503 3.497 14 O -0.517 6.517 15 C -0.112 4.112 16 Br -0.114 7.114 17 C -0.113 4.113 18 C -0.007 4.007 19 H 0.265 0.735 20 H 0.006 0.994 21 H 0.058 0.942 22 H 0.035 0.965 23 H 0.049 0.951 24 H 0.394 0.606 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.028 0.972 30 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.230 -12.192 8.782 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.511 4.511 8 C -0.026 4.026 9 C -0.153 4.153 10 C 0.052 3.948 11 H 0.098 0.902 12 N -0.370 5.370 13 C 0.286 3.714 14 O -0.392 6.392 15 C -0.231 4.231 16 Br -0.033 7.033 17 C -0.152 4.152 18 C -0.045 4.045 19 H 0.075 0.925 20 H 0.024 0.976 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.228 0.772 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.680 -13.035 7.806 18.016 hybrid contribution 0.674 1.543 0.777 1.855 sum 10.354 -11.492 8.583 17.690 Atomic orbital electron populations 1.69827 1.06174 1.27083 1.49452 1.24849 0.94731 0.98520 0.94510 0.86661 0.79411 0.83074 0.78924 1.19986 1.21818 1.20036 1.20024 0.89167 0.91634 1.50263 1.19338 0.98642 0.92603 0.91983 1.21968 0.93128 0.98606 1.01618 1.21110 0.94982 0.88428 0.90233 0.90216 1.46306 1.63496 1.05475 1.21707 1.19989 0.79910 0.83441 0.88073 1.90798 1.45428 1.75777 1.27159 1.24904 1.06861 0.89480 1.01903 1.97394 1.99163 1.14835 1.91933 1.21863 0.96842 0.94762 1.01724 1.19570 0.96917 0.94438 0.93606 0.92474 0.97563 0.92313 0.94609 0.93210 0.77247 0.85885 0.85793 0.92448 0.94319 0.95335 0.96053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 12.74 55.43 0.71 -24.63 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.89 20.73 26.80 -169.99 -4.56 16.18 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.49 -12.71 5.51 -98.93 -0.55 -13.26 16 8 C 0.01 0.31 5.96 -27.49 -0.16 0.15 16 9 C -0.11 -2.45 5.50 -26.64 -0.15 -2.60 16 10 C 0.15 2.91 2.35 -67.97 -0.16 2.75 16 11 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 12 N -0.72 -10.39 5.07 -53.85 -0.27 -10.67 16 13 C 0.50 7.48 7.83 -10.99 -0.09 7.40 16 14 O -0.52 -10.05 15.49 5.56 0.09 -9.96 16 15 C -0.11 -1.13 7.09 36.01 0.26 -0.87 16 16 Br -0.11 -1.40 33.04 -68.01 -2.25 -3.64 16 17 C -0.11 -2.11 5.40 -26.64 -0.14 -2.25 16 18 C -0.01 -0.16 5.59 -27.50 -0.15 -0.31 16 19 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 20 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 21 H 0.06 1.62 7.08 -51.93 -0.37 1.25 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.39 4.30 8.60 -40.82 -0.35 3.95 16 25 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.62 5.17 -51.93 -0.27 0.35 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 267.03 15.07 4.02 4.02 Total: -1.00 -30.17 267.03 -7.40 -37.57 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -3.90 Total: -1.84 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.24 Total: -7.03 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.43 Total: -35.29 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.56 Total: 16.18 kcal Atomic # 35 Polarization: -1.40 SS G_CDS: -2.25 Total: -3.64 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.17 -7.40 -37.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144199203.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.047 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds