Wall clock time and date at job start Mon Mar 30 2020 01:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99788 * 2 1 4 4 H 1.48507 * 109.47120 * 239.99841 * 3 2 1 5 5 H 1.48490 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46941 * 120.00259 * 3 2 1 7 7 C 1.37877 * 120.00193 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.84887 * 359.97438 * 7 2 1 9 9 C 1.53228 * 108.53589 * 231.32614 * 8 7 2 10 10 C 1.52952 * 109.40786 * 305.37245 * 9 8 7 11 11 H 1.08997 * 109.41476 * 303.49453 * 10 9 8 12 12 N 1.46501 * 109.41749 * 183.70332 * 10 9 8 13 13 C 1.34773 * 119.99862 * 84.64631 * 12 10 9 14 14 O 1.21277 * 120.00236 * 0.02562 * 13 12 10 15 15 C 1.50703 * 120.00082 * 180.02562 * 13 12 10 16 16 Br 1.96595 * 109.47174 * 180.02562 * 15 13 12 17 17 C 1.52966 * 109.81570 * 63.60038 * 10 9 8 18 18 C 1.51268 * 120.84790 * 179.97438 * 7 2 1 19 19 H 0.96999 * 119.99887 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.62592 * 111.61555 * 8 7 2 21 21 H 1.09001 * 109.78825 * 351.13553 * 8 7 2 22 22 H 1.09003 * 109.47999 * 185.38997 * 9 8 7 23 23 H 1.09002 * 109.48492 * 65.35753 * 9 8 7 24 24 H 0.97000 * 119.99823 * 264.65237 * 12 10 9 25 25 H 1.09002 * 109.47214 * 300.00228 * 15 13 12 26 26 H 1.08997 * 109.47314 * 59.99977 * 15 13 12 27 27 H 1.08997 * 109.47972 * 56.37851 * 17 10 9 28 28 H 1.08996 * 109.48230 * 176.42423 * 17 10 9 29 29 H 1.08992 * 109.62819 * 8.95683 * 18 7 2 30 30 H 1.09002 * 109.62503 * 248.38475 * 18 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 6 1.2678 -2.5151 -0.0005 9 6 1.8238 -3.3830 1.1333 10 6 3.3406 -3.5073 0.9811 11 1 3.5740 -3.9122 -0.0037 12 7 3.8614 -4.4083 2.0123 13 6 3.8541 -5.7406 1.8093 14 8 3.4169 -6.1937 0.7727 15 6 4.3892 -6.6675 2.8703 16 35 4.2311 -8.5281 2.2554 17 6 3.9915 -2.1313 1.1324 18 6 3.5171 -1.2164 -0.0011 19 1 -0.4850 0.8400 -0.0004 20 1 1.4194 -3.0188 -0.9552 21 1 0.2030 -2.3438 0.1580 22 1 1.3714 -4.3737 1.0880 23 1 1.5914 -2.9205 2.0926 24 1 4.2113 -4.0458 2.8412 25 1 5.4372 -6.4357 3.0602 26 1 3.8163 -6.5379 3.7885 27 1 3.7078 -1.6985 2.0916 28 1 5.0756 -2.2350 1.0864 29 1 3.8982 -0.2078 0.1588 30 1 3.8772 -1.5997 -0.9559 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144199203.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:43 Heat of formation + Delta-G solvation = -75.237725 kcal Electronic energy + Delta-G solvation = -14290.633546 eV Core-core repulsion = 11744.370500 eV Total energy + Delta-G solvation = -2546.263046 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 275.026 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.86477 -38.44412 -35.39678 -33.60248 -32.55703 -31.47062 -29.66474 -27.79901 -23.91755 -23.43786 -21.43890 -21.19274 -18.40958 -17.73062 -17.13770 -16.47016 -16.38044 -15.20937 -14.87451 -14.72519 -14.15990 -13.95849 -13.80340 -13.65113 -13.18486 -12.77698 -12.66720 -12.52057 -12.05600 -11.82294 -11.47985 -11.17772 -10.93640 -10.88647 -10.78192 -10.67681 -10.53092 -9.90688 -8.16112 -6.12135 0.57754 1.42139 1.44375 1.52340 1.58773 2.22840 2.42080 3.11857 3.66559 4.03246 4.07440 4.24086 4.25954 4.49922 4.71201 4.87914 4.98312 5.02919 5.14479 5.21277 5.23146 5.56165 5.57715 5.67743 5.75696 5.81373 6.33411 6.58479 6.94031 7.27570 7.46420 8.95391 Molecular weight = 275.03amu Principal moments of inertia in cm(-1) A = 0.064346 B = 0.004091 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.042302 B = 6842.371461 C = 7086.817653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.020 3.980 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.298 1.298 6 H -0.255 1.255 7 C -0.502 4.502 8 C 0.008 3.992 9 C -0.102 4.102 10 C 0.167 3.833 11 H 0.055 0.945 12 N -0.706 5.706 13 C 0.499 3.501 14 O -0.568 6.568 15 C -0.098 4.098 16 Br -0.138 7.138 17 C -0.104 4.104 18 C -0.013 4.013 19 H 0.263 0.737 20 H -0.012 1.012 21 H 0.023 0.977 22 H 0.027 0.973 23 H 0.051 0.949 24 H 0.417 0.583 25 H 0.163 0.837 26 H 0.157 0.843 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.953 -11.993 10.717 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.775 3.225 4 H -0.193 1.193 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.521 4.521 8 C -0.030 4.030 9 C -0.141 4.141 10 C 0.063 3.937 11 H 0.073 0.927 12 N -0.358 5.358 13 C 0.285 3.715 14 O -0.447 6.447 15 C -0.217 4.217 16 Br -0.057 7.057 17 C -0.142 4.142 18 C -0.051 4.051 19 H 0.072 0.928 20 H 0.006 0.994 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.254 0.746 25 H 0.180 0.820 26 H 0.175 0.825 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.448 -12.843 9.787 20.388 hybrid contribution -0.222 1.421 0.134 1.444 sum 12.226 -11.422 9.921 19.451 Atomic orbital electron populations 1.69992 1.07978 1.27642 1.51790 1.25700 0.95364 1.02096 0.94659 0.85708 0.78258 0.78725 0.79790 1.19307 1.22438 1.17924 1.20620 0.91475 0.91378 1.48666 1.19289 0.97044 0.93909 0.92753 1.21753 0.95491 0.97079 0.99743 1.20630 0.92885 0.89643 0.90565 0.92650 1.45955 1.63026 1.05114 1.21668 1.20769 0.78738 0.83694 0.88335 1.90795 1.47592 1.76647 1.29659 1.24970 1.09549 0.86529 1.00616 1.97412 1.99248 1.16722 1.92354 1.21718 0.98894 0.93236 1.00374 1.19615 0.94280 0.96046 0.95208 0.92798 0.99353 0.95848 0.95430 0.93049 0.74553 0.81959 0.82487 0.91473 0.90625 0.94445 0.96273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 12.74 21.45 0.27 -54.74 16 2 C 0.02 1.08 5.46 84.65 0.46 1.54 16 3 Si 0.95 42.03 26.80 68.60 1.84 43.87 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.30 -13.34 7.11 99.48 0.71 -12.64 16 6 H -0.25 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.50 -26.05 5.51 -16.17 -0.09 -26.14 16 8 C 0.01 0.42 5.96 30.10 0.18 0.60 16 9 C -0.10 -4.36 5.50 30.65 0.17 -4.19 16 10 C 0.17 5.97 2.35 44.96 0.11 6.08 16 11 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 12 N -0.71 -18.03 5.07 -442.67 -2.25 -20.28 16 13 C 0.50 13.52 7.83 87.66 0.69 14.20 16 14 O -0.57 -21.64 15.49 -3.02 -0.05 -21.69 16 15 C -0.10 -1.58 7.09 71.24 0.50 -1.07 16 16 Br -0.14 -3.12 33.04 -20.37 -0.67 -3.79 16 17 C -0.10 -3.50 5.40 30.65 0.17 -3.34 16 18 C -0.01 -0.57 5.59 30.10 0.17 -0.40 16 19 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 20 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 21 H 0.02 1.34 7.08 -2.39 -0.02 1.33 16 22 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.42 7.06 8.60 -92.71 -0.80 6.26 16 25 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.52 5.17 -2.39 -0.01 1.50 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -68.37 267.03 1.85 -66.52 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 0.35 Total: 2.84 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 2.35 Total: -12.72 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -1.97 Total: -75.02 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.84 Total: 43.87 kcal Atomic # 35 Polarization: -3.12 SS G_CDS: -0.67 Total: -3.79 kcal Total: -68.37 1.85 -66.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144199203.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.717 kcal (2) G-P(sol) polarization free energy of solvation -68.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds