Wall clock time and date at job start Mon Mar 30 2020 01:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99435 * 3 2 1 5 5 H 1.48504 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99712 * 3 2 1 7 7 C 1.38817 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 11 15 15 C 1.47241 * 119.99566 * 179.72410 * 13 12 11 16 16 C 1.35151 * 123.13512 * 179.72829 * 15 13 12 17 17 S 1.70944 * 108.86351 * 179.90549 * 16 15 13 18 18 C 1.70766 * 91.14486 * 0.30126 * 17 16 15 19 19 Cl 1.73598 * 124.72565 * 179.82344 * 18 17 16 20 20 N 1.28772 * 110.55091 * 359.82387 * 18 17 16 21 21 H 0.96996 * 120.00448 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 23 23 H 1.08995 * 109.47424 * 60.00294 * 10 9 7 24 24 H 1.09006 * 109.46868 * 299.99845 * 10 9 7 25 25 H 1.09009 * 109.46730 * 59.99787 * 11 10 9 26 26 H 1.08998 * 109.46846 * 300.00332 * 11 10 9 27 27 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 28 28 H 1.08003 * 125.57337 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8198 0.0012 12 7 1.7965 -6.0884 0.0006 13 6 1.1226 -7.2556 -0.0047 14 8 -0.0937 -7.2557 -0.0038 15 6 1.8589 -8.5307 -0.0115 16 6 1.2483 -9.7364 -0.0116 17 16 2.4417 -10.9603 -0.0231 18 6 3.6879 -9.7929 -0.0181 19 17 5.3850 -10.1580 -0.0205 20 7 3.1935 -8.6039 -0.0123 21 1 -0.4850 0.8400 -0.0004 22 1 0.3556 -2.3880 -0.0002 23 1 2.6848 -3.7145 0.8905 24 1 2.6848 -3.7144 -0.8895 25 1 0.4369 -4.7622 -0.8886 26 1 0.4377 -4.7618 0.8914 27 1 2.7665 -6.0884 -0.0005 28 1 0.1808 -9.9000 -0.0073 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146814922.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:01 Heat of formation + Delta-G solvation = 42.177012 kcal Electronic energy + Delta-G solvation = -15699.469046 eV Core-core repulsion = 12711.937699 eV Total energy + Delta-G solvation = -2987.531347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.024 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.55782 -39.69654 -37.36574 -36.77958 -36.24507 -35.03351 -31.21668 -28.75009 -27.75040 -24.93238 -23.70045 -22.34098 -21.76243 -19.63957 -18.96560 -18.17704 -17.67902 -17.05775 -16.93886 -16.10761 -15.64359 -15.39427 -14.84677 -14.60249 -14.44620 -14.40727 -13.77773 -13.60482 -13.16721 -13.15904 -12.54043 -12.31331 -12.00328 -11.44315 -11.38898 -11.15202 -11.01909 -10.94091 -10.09224 -9.82729 -9.17131 -8.45312 -7.74386 -4.08375 -1.71565 0.51104 0.75372 1.13917 1.66436 1.85935 1.92927 2.06948 2.09932 2.64145 2.82266 3.16642 3.25872 3.34447 3.78149 3.87153 3.93275 4.02883 4.20413 4.47967 4.60834 4.76994 5.00542 5.40901 5.92360 5.94979 6.33507 6.76441 7.39584 7.94173 8.05545 8.74176 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.033148 B = 0.003074 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.489126 B = 9107.877419 C = 9931.906118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.090 4.090 3 Si 1.047 2.953 4 H -0.224 1.224 5 H -0.267 1.267 6 H -0.224 1.224 7 C 0.390 3.610 8 H 0.286 0.714 9 N -0.520 5.520 10 C 0.068 3.932 11 C 0.100 3.900 12 N -0.729 5.729 13 C 0.561 3.439 14 O -0.656 6.656 15 C -0.098 4.098 16 C -0.795 4.795 17 S -0.198 6.198 18 C -0.242 4.242 19 Cl -0.088 7.088 20 N -0.433 5.433 21 H 0.381 0.619 22 H 0.439 0.561 23 H 0.160 0.840 24 H 0.160 0.840 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.408 0.592 28 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 57.648 0.087 57.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.326 4.326 3 Si 0.858 3.142 4 H -0.147 1.147 5 H -0.191 1.191 6 H -0.147 1.147 7 C 0.206 3.794 8 H 0.301 0.699 9 N -0.109 5.109 10 C -0.054 4.054 11 C -0.025 4.025 12 N -0.384 5.384 13 C 0.363 3.637 14 O -0.547 6.547 15 C -0.241 4.241 16 C -0.934 4.934 17 S 0.026 5.974 18 C -0.513 4.513 19 Cl -0.062 7.062 20 N -0.152 5.152 21 H 0.201 0.799 22 H 0.280 0.720 23 H 0.177 0.823 24 H 0.177 0.823 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.244 0.756 28 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 3.965 56.741 0.086 56.879 hybrid contribution -1.495 0.157 0.010 1.503 sum 2.470 56.898 0.095 56.952 Atomic orbital electron populations 1.69704 1.09925 1.42400 0.95725 1.28977 0.97751 1.07331 0.98523 0.84029 0.78393 0.67895 0.83910 1.14668 1.19080 1.14671 1.27046 1.04108 0.81277 0.66934 0.69868 1.47082 1.15584 1.07942 1.40281 1.22991 0.94147 0.77455 1.10793 1.21362 0.95430 0.83514 1.02147 1.45088 1.09959 1.03331 1.80062 1.17184 0.85391 0.83156 0.77926 1.90364 1.16176 1.88295 1.59859 1.17759 0.87002 0.91851 1.27522 1.19993 0.91574 0.94267 1.87547 1.79137 1.01665 1.18049 1.98580 1.22376 0.83631 0.92139 1.53201 1.97975 1.15220 1.94026 1.98965 1.65225 1.10759 1.25019 1.14213 0.79860 0.71957 0.82255 0.82264 0.92583 0.92543 0.75617 0.97488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 7.63 13.06 21.65 0.28 7.92 15 2 C -0.09 1.84 5.50 84.86 0.47 2.31 15 3 Si 1.05 -20.19 29.55 68.60 2.03 -18.16 15 4 H -0.22 4.01 7.11 99.48 0.71 4.72 15 5 H -0.27 3.57 7.11 99.48 0.71 4.28 15 6 H -0.22 4.01 7.11 99.48 0.71 4.72 15 7 C 0.39 -9.31 9.99 84.03 0.84 -8.47 15 8 H 0.29 -10.42 7.83 -2.91 -0.02 -10.44 15 9 N -0.52 7.07 5.60 -343.45 -1.92 5.14 15 10 C 0.07 -0.22 6.37 86.38 0.55 0.33 15 11 C 0.10 2.15 5.79 86.38 0.50 2.65 15 12 N -0.73 -31.81 5.55 -466.53 -2.59 -34.40 15 13 C 0.56 38.68 7.80 86.61 0.68 39.36 15 14 O -0.66 -48.95 16.71 -4.14 -0.07 -49.01 15 15 C -0.10 -8.25 6.70 40.52 0.27 -7.98 15 16 C -0.80 -75.70 10.61 67.11 0.71 -74.99 15 17 S -0.20 -17.17 22.96 -56.49 -1.30 -18.47 15 18 C -0.24 -19.45 7.98 130.69 1.04 -18.41 15 19 Cl -0.09 -5.72 29.33 -2.72 -0.08 -5.80 15 20 N -0.43 -34.23 10.13 -183.80 -1.86 -36.09 15 21 H 0.38 -5.82 8.31 -92.71 -0.77 -6.59 15 22 H 0.44 -4.58 7.67 -92.71 -0.71 -5.29 15 23 H 0.16 -1.23 8.14 -2.39 -0.02 -1.24 15 24 H 0.16 -1.22 8.14 -2.38 -0.02 -1.24 15 25 H 0.06 1.32 8.14 -2.38 -0.02 1.30 15 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 27 H 0.41 16.39 7.99 -92.71 -0.74 15.65 15 28 H 0.01 0.67 8.03 -2.91 -0.02 0.65 15 Total: -1.00 -205.58 287.36 -0.68 -206.26 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -0.23 Total: 7.83 kcal Atomic # 6 Polarization: -70.27 SS G_CDS: 5.06 Total: -65.21 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -6.09 Total: -57.43 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -0.07 Total: -49.01 kcal Atomic # 14 Polarization: -20.19 SS G_CDS: 2.03 Total: -18.16 kcal Atomic # 16 Polarization: -17.17 SS G_CDS: -1.30 Total: -18.47 kcal Atomic # 17 Polarization: -5.72 SS G_CDS: -0.08 Total: -5.80 kcal Total: -205.58 -0.68 -206.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146814922.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.435 kcal (2) G-P(sol) polarization free energy of solvation -205.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -206.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds