Wall clock time and date at job start Mon Mar 30 2020 01:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47080 * 269.99623 * 3 2 1 5 5 H 1.48500 * 109.47518 * 29.99914 * 3 2 1 6 6 H 1.48505 * 109.46886 * 149.99870 * 3 2 1 7 7 C 1.38869 * 119.99533 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 180.02562 * 7 2 1 9 9 N 1.36890 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.38239 * 119.99847 * 179.97438 * 9 7 2 11 11 N 1.32486 * 119.80947 * 354.22701 * 10 9 7 12 12 C 1.31891 * 121.76770 * 179.70944 * 11 10 9 13 13 Cl 1.73595 * 119.40948 * 180.29344 * 12 11 10 14 14 C 1.38767 * 121.17381 * 0.57527 * 12 11 10 15 15 Cl 1.73606 * 120.26130 * 179.73935 * 14 12 11 16 16 C 1.38339 * 119.48061 * 359.71773 * 14 12 11 17 17 C 1.40034 * 118.37089 * 0.02562 * 16 14 12 18 18 C 1.47396 * 120.58751 * 180.02562 * 17 16 14 19 19 N 1.34770 * 120.00216 * 5.70283 * 18 17 16 20 20 O 1.21611 * 119.99688 * 185.70566 * 18 17 16 21 21 H 0.97000 * 119.99213 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99768 * 0.27204 * 9 7 2 23 23 H 1.08000 * 120.81100 * 180.02562 * 16 14 12 24 24 H 0.97002 * 119.99902 * 359.97438 * 19 18 17 25 25 H 0.97002 * 120.00575 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0095 -1.2027 0.0005 8 1 3.0895 -1.2027 0.0010 9 7 1.3250 -2.3882 0.0005 10 6 2.0161 -3.5854 0.0005 11 7 3.3359 -3.5839 -0.1151 12 6 4.0343 -4.7027 -0.1140 13 17 5.7624 -4.6291 -0.2616 14 6 3.4118 -5.9380 -0.0027 15 17 4.3537 -7.3962 -0.0106 16 6 2.0347 -5.9982 0.1150 17 6 1.3139 -4.7976 0.1169 18 6 -0.1549 -4.8049 0.2402 19 7 -0.8064 -5.9625 0.4677 20 8 -0.7788 -3.7662 0.1366 21 1 -0.4849 0.8401 -0.0004 22 1 0.3550 -2.3881 -0.0038 23 1 1.5281 -6.9479 0.2033 24 1 -0.3087 -6.7910 0.5499 25 1 -1.7730 -5.9674 0.5485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182300.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:14 Heat of formation + Delta-G solvation = -14.780308 kcal Electronic energy + Delta-G solvation = -16503.941344 eV Core-core repulsion = 13376.063341 eV Total energy + Delta-G solvation = -3127.878003 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 274.997 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.88440 -38.06283 -36.31390 -35.86752 -35.27860 -33.41775 -32.24270 -31.33406 -28.71218 -25.18812 -23.98506 -21.89690 -20.58330 -18.23957 -17.73000 -17.12429 -16.49955 -15.49990 -14.89822 -14.77483 -14.48384 -13.95588 -13.76288 -13.57788 -12.79365 -12.52009 -12.07825 -11.89281 -11.38086 -11.23475 -10.96804 -10.78231 -10.59686 -10.35210 -10.13005 -9.59681 -9.33412 -9.14745 -8.89949 -8.71106 -7.28719 -7.02632 -4.09132 1.39535 1.99583 2.38850 2.88521 2.99283 3.00125 3.06562 3.48030 3.76077 4.02579 4.32991 4.73587 4.92278 5.22545 5.50037 5.87117 5.96933 6.38091 6.45395 6.89978 7.00044 7.14685 7.51370 7.74510 8.23665 8.45509 8.73625 8.91129 9.39741 10.06914 Molecular weight = 275.00amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.007237 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.171116 B = 3867.830310 C = 5464.374202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.281 4.281 8 H 0.124 0.876 9 N -0.448 5.448 10 C 0.340 3.660 11 N -0.513 5.513 12 C 0.282 3.718 13 Cl -0.048 7.048 14 C -0.233 4.233 15 Cl -0.088 7.088 16 C 0.048 3.952 17 C -0.318 4.318 18 C 0.575 3.425 19 N -0.861 5.861 20 O -0.554 6.554 21 H 0.288 0.712 22 H 0.433 0.567 23 H 0.129 0.871 24 H 0.396 0.604 25 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 -9.446 0.683 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.414 4.414 8 H 0.142 0.858 9 N -0.053 5.053 10 C 0.090 3.910 11 N -0.232 5.232 12 C 0.097 3.903 13 Cl -0.020 7.020 14 C -0.270 4.270 15 Cl -0.061 7.061 16 C 0.022 3.978 17 C -0.333 4.333 18 C 0.366 3.634 19 N -0.424 5.424 20 O -0.434 6.434 21 H 0.098 0.902 22 H 0.285 0.715 23 H 0.147 0.853 24 H 0.224 0.776 25 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.589 -7.367 0.515 7.826 hybrid contribution -0.362 -0.610 0.105 0.718 sum 2.226 -7.977 0.620 8.305 Atomic orbital electron populations 1.69773 1.06593 1.30302 1.40069 1.25852 0.95888 1.01422 0.95390 0.85570 0.79483 0.78543 0.79304 1.19337 1.20080 1.18278 1.20519 0.94788 0.82246 1.43858 0.85790 1.42384 1.11867 1.02046 1.49047 1.17315 0.85995 0.85455 1.02193 1.66341 1.07044 1.27791 1.22030 1.20919 0.86107 0.88123 0.95175 1.98353 1.09258 1.98688 1.95707 1.20155 0.91576 0.85638 1.29603 1.98262 1.73170 1.36447 1.98179 1.20794 0.90975 0.96620 0.89446 1.19135 0.92303 0.92823 1.29003 1.17937 0.87123 0.83148 0.75150 1.43590 1.10947 1.09883 1.77956 1.90535 1.68444 1.31371 1.53042 0.90173 0.71548 0.85285 0.77565 0.77255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.74 13.05 55.49 0.72 -21.01 15 2 C 0.03 0.63 5.50 -17.45 -0.10 0.53 15 3 Si 0.95 18.90 29.55 -169.99 -5.02 13.87 15 4 H -0.27 -5.28 7.11 56.52 0.40 -4.87 15 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 7 C -0.28 -7.28 9.70 -15.06 -0.15 -7.43 15 8 H 0.12 3.17 7.09 -52.49 -0.37 2.80 15 9 N -0.45 -11.60 5.29 -10.96 -0.06 -11.65 15 10 C 0.34 8.08 7.44 -155.14 -1.15 6.93 15 11 N -0.51 -11.84 9.06 -9.25 -0.08 -11.92 15 12 C 0.28 5.68 7.27 -17.33 -0.13 5.56 15 13 Cl -0.05 -0.85 28.09 -51.86 -1.46 -2.31 15 14 C -0.23 -4.20 6.34 -39.35 -0.25 -4.45 15 15 Cl -0.09 -1.35 27.95 -51.86 -1.45 -2.80 15 16 C 0.05 0.81 9.42 -38.87 -0.37 0.44 15 17 C -0.32 -6.46 5.91 -104.61 -0.62 -7.08 15 18 C 0.58 11.17 8.02 -12.54 -0.10 11.07 15 19 N -0.86 -11.45 8.83 30.42 0.27 -11.18 15 20 O -0.55 -13.09 14.51 5.27 0.08 -13.01 15 21 H 0.29 6.84 8.31 -40.82 -0.34 6.50 15 22 H 0.43 11.67 4.39 -40.92 -0.18 11.49 15 23 H 0.13 1.64 6.55 -52.49 -0.34 1.30 15 24 H 0.40 4.02 6.96 -40.82 -0.28 3.74 15 25 H 0.40 4.56 8.93 -40.82 -0.36 4.20 15 LS Contribution 259.47 15.07 3.91 3.91 Total: -1.00 -28.41 259.47 -6.63 -35.04 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -0.68 Total: 15.49 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -2.86 Total: 5.57 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.85 Total: -55.77 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -2.91 Total: -5.11 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.41 -6.63 -35.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182300.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.258 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds