Wall clock time and date at job start Mon Mar 30 2020 01:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.52998 * 109.46927 * 240.01000 * 2 1 3 5 5 C 1.52999 * 109.47358 * 174.08270 * 4 2 1 6 6 C 1.50697 * 109.47031 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00550 * 0.02562 * 6 5 4 8 8 C 1.37887 * 119.99826 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99951 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 119.99791 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47582 * 89.99635 * 10 8 6 12 12 H 1.48503 * 109.47189 * 209.99705 * 10 8 6 13 13 H 1.48502 * 109.47369 * 329.99491 * 10 8 6 14 14 N 1.46894 * 109.47641 * 120.00767 * 2 1 3 15 15 C 1.46424 * 111.00059 * 72.98784 * 14 2 1 16 16 C 1.53385 * 108.65532 * 178.85681 * 15 14 2 17 17 H 1.09002 * 109.76968 * 51.32930 * 16 15 14 18 18 N 1.46903 * 109.76927 * 172.06294 * 16 15 14 19 19 C 1.53041 * 107.91578 * 291.72275 * 16 15 14 20 20 C 1.50799 * 109.65508 * 47.30005 * 19 16 15 21 21 C 1.38612 * 118.12446 * 164.55849 * 20 19 16 22 22 C 1.38056 * 120.49087 * 179.73301 * 21 20 19 23 23 C 1.38305 * 119.88581 * 359.97438 * 22 21 20 24 24 C 1.37803 * 119.95700 * 0.13142 * 23 22 21 25 25 C 1.38376 * 122.01402 * 344.50041 * 20 19 16 26 26 H 1.08999 * 109.47662 * 59.99480 * 1 2 3 27 27 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46933 * 299.98855 * 1 2 3 29 29 H 1.08999 * 109.46944 * 294.08428 * 4 2 1 30 30 H 1.09006 * 109.47111 * 54.07950 * 4 2 1 31 31 H 1.08998 * 109.46773 * 299.99358 * 5 4 2 32 32 H 1.08997 * 109.47057 * 59.99218 * 5 4 2 33 33 H 0.96999 * 119.99741 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.60673 * 298.60655 * 15 14 2 35 35 H 1.09000 * 109.60282 * 58.93693 * 15 14 2 36 36 H 1.00899 * 110.99511 * 179.97438 * 18 16 15 37 37 H 1.00904 * 110.99999 * 303.95180 * 18 16 15 38 38 H 1.08995 * 109.44044 * 167.35956 * 19 16 15 39 39 H 1.09003 * 109.44234 * 287.28143 * 19 16 15 40 40 H 1.08006 * 119.75542 * 359.74875 * 21 20 19 41 41 H 1.07998 * 120.05654 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.02546 * 180.10391 * 23 22 21 43 43 H 1.07995 * 119.79589 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2494 5 6 3.5627 -0.5936 -1.3260 6 6 4.0650 -1.3043 -2.5563 7 1 3.3679 -1.7973 -3.2176 8 6 5.4146 -1.3244 -2.8382 9 7 5.8529 -1.9442 -3.9121 10 14 6.6203 -0.4712 -1.6947 11 1 7.0763 -1.4269 -0.6536 12 1 7.7901 0.0058 -2.4753 13 1 5.9531 0.6861 -1.0460 14 7 2.0198 -0.6926 1.1993 15 6 1.8177 -2.1387 1.0894 16 6 2.3720 -2.8089 2.3528 17 1 1.9615 -2.3233 3.2382 18 7 2.0146 -4.2338 2.3570 19 6 3.8947 -2.6560 2.3374 20 6 4.2579 -1.2290 2.0120 21 6 5.5546 -0.8105 2.2663 22 6 5.9415 0.4838 1.9820 23 6 5.0307 1.3717 1.4388 24 6 3.7392 0.9636 1.1852 25 6 3.3413 -0.3434 1.4732 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.7657 -1.7747 -1.1981 30 1 1.5926 -0.2719 -2.1361 31 1 3.8369 0.4601 -1.3774 32 1 4.0100 -1.0426 -0.4393 33 1 6.8023 -1.9586 -4.1101 34 1 0.7529 -2.3533 0.9987 35 1 2.3429 -2.5157 0.2118 36 1 2.3711 -4.6935 3.1813 37 1 1.0162 -4.3564 2.2774 38 1 4.2955 -2.9181 3.3165 39 1 4.3183 -3.3187 1.5828 40 1 6.2678 -1.5023 2.6899 41 1 6.9537 0.8023 2.1826 42 1 5.3314 2.3844 1.2139 43 1 3.0300 1.6592 0.7614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:00 Heat of formation + Delta-G solvation = 34.526095 kcal Electronic energy + Delta-G solvation = -22853.943198 eV Core-core repulsion = 19898.685256 eV Total energy + Delta-G solvation = -2955.257943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79656 -37.14518 -36.06659 -33.13574 -32.11585 -31.36702 -30.13680 -29.06260 -27.82043 -25.35256 -24.77178 -22.47536 -22.21991 -20.78425 -19.45061 -18.92925 -17.18695 -16.67777 -16.08486 -15.70309 -15.04427 -14.75110 -14.26078 -14.23318 -13.85500 -13.57343 -13.20326 -12.95509 -12.81265 -12.57237 -12.48119 -12.26733 -11.91802 -11.80166 -11.36649 -11.34349 -11.12148 -10.83649 -10.73470 -10.36887 -10.14635 -10.07748 -9.68318 -9.59552 -9.18580 -9.14367 -8.70294 -8.49657 -8.22294 -7.12882 -5.97563 -3.95288 1.81056 1.85035 3.40210 3.46457 3.55338 3.84717 4.26958 4.54848 4.57690 4.82325 5.04385 5.08654 5.26342 5.37483 5.38270 5.44975 5.49185 5.56414 5.64076 5.68442 5.74393 5.92743 5.94920 6.01270 6.04179 6.09863 6.20240 6.28124 6.34071 6.40182 6.43184 6.58995 6.65019 6.83800 6.91072 6.97347 7.08094 7.19902 7.36676 7.38649 7.42587 7.52786 7.72499 7.87233 8.59483 9.06649 9.65940 11.15239 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.008989 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.902593 B = 3114.129281 C = 3521.307232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.068 3.932 3 H 0.092 0.908 4 C -0.136 4.136 5 C -0.016 4.016 6 C -0.518 4.518 7 H 0.067 0.933 8 C 0.068 3.932 9 N -0.906 5.906 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.295 1.295 13 H -0.252 1.252 14 N -0.487 5.487 15 C 0.054 3.946 16 C 0.093 3.907 17 H 0.043 0.957 18 N -0.842 5.842 19 C -0.069 4.069 20 C -0.128 4.128 21 C -0.091 4.091 22 C -0.160 4.160 23 C -0.090 4.090 24 C -0.157 4.157 25 C 0.155 3.845 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.015 0.985 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.342 0.658 37 H 0.341 0.659 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 2.389 15.112 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.038 4.038 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.053 4.053 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.133 4.133 9 N -0.545 5.545 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.221 1.221 13 H -0.175 1.175 14 N -0.200 5.200 15 C -0.073 4.073 16 C -0.019 4.019 17 H 0.061 0.939 18 N -0.372 5.372 19 C -0.107 4.107 20 C -0.131 4.131 21 C -0.110 4.110 22 C -0.179 4.179 23 C -0.109 4.109 24 C -0.177 4.177 25 C 0.056 3.944 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.026 2.426 14.700 16.473 hybrid contribution 0.766 0.354 0.649 1.065 sum -6.260 2.780 15.349 16.808 Atomic orbital electron populations 1.21824 0.94623 1.01848 1.01502 1.22223 0.95016 0.98935 0.87622 0.89030 1.22189 0.99527 1.00066 0.95681 1.19793 0.91001 0.96783 0.97697 1.21132 0.92981 1.33844 1.07584 0.91444 1.25003 0.98415 0.94906 0.94973 1.69927 1.14526 1.43757 1.26328 0.86901 0.80725 0.81604 0.81066 1.20099 1.22117 1.17547 1.58395 1.16471 1.09159 1.35981 1.22218 1.01283 0.85465 0.98286 1.21344 0.95549 0.87976 0.97017 0.93880 1.58560 1.18973 1.12373 1.47331 1.20485 0.94854 0.93444 1.01868 1.19289 0.93488 0.94854 1.05498 1.20804 0.94804 0.95848 0.99521 1.20828 0.99309 0.94252 1.03508 1.20799 0.93241 0.99234 0.97627 1.21048 0.96946 0.95468 1.04224 1.18365 0.87259 0.93358 0.95462 0.92012 0.92780 0.92551 0.91997 0.91931 0.96702 0.95835 0.92959 0.90466 0.90458 0.84569 0.84604 0.91463 0.89572 0.86684 0.86826 0.86633 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.25 37.16 0.34 -1.47 16 2 C 0.07 1.08 2.38 -67.72 -0.16 0.92 16 3 H 0.09 1.47 5.12 -51.93 -0.27 1.20 16 4 C -0.14 -2.69 4.11 -26.73 -0.11 -2.80 16 5 C -0.02 -0.38 2.50 -27.88 -0.07 -0.45 16 6 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 7 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 9 N -0.91 -28.85 13.96 55.43 0.77 -28.07 16 10 Si 0.87 22.61 27.47 -169.99 -4.67 17.94 16 11 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 13 H -0.25 -6.17 5.82 56.52 0.33 -5.84 16 14 N -0.49 -7.87 4.42 -163.74 -0.72 -8.59 16 15 C 0.05 0.84 4.09 -3.88 -0.02 0.82 16 16 C 0.09 1.27 3.47 -67.49 -0.23 1.03 16 17 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 18 N -0.84 -9.69 9.27 -4.48 -0.04 -9.73 16 19 C -0.07 -1.05 5.42 -27.81 -0.15 -1.20 16 20 C -0.13 -2.23 5.06 -104.39 -0.53 -2.76 16 21 C -0.09 -1.55 9.63 -39.51 -0.38 -1.93 16 22 C -0.16 -2.68 10.05 -39.62 -0.40 -3.08 16 23 C -0.09 -1.53 9.33 -39.72 -0.37 -1.90 16 24 C -0.16 -2.73 7.24 -39.22 -0.28 -3.02 16 25 C 0.15 2.74 3.43 -83.85 -0.29 2.45 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.68 6.84 -51.93 -0.36 0.32 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.25 5.92 -51.93 -0.31 0.94 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.01 0.36 6.52 -51.93 -0.34 0.03 16 32 H 0.02 0.58 4.17 -51.93 -0.22 0.36 16 33 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 34 H 0.08 1.06 6.80 -51.93 -0.35 0.71 16 35 H 0.08 1.47 5.62 -51.93 -0.29 1.18 16 36 H 0.34 3.23 9.05 -39.29 -0.36 2.87 16 37 H 0.34 3.31 9.00 -39.29 -0.35 2.96 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 41 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.12 1.99 5.68 -52.49 -0.30 1.70 16 LS Contribution 320.28 15.07 4.83 4.83 Total: -1.00 -32.58 320.28 -9.48 -42.05 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.57 Total: 8.45 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -3.08 Total: -26.87 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.01 Total: -46.39 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.94 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.58 -9.48 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.580 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds