Wall clock time and date at job start Mon Mar 30 2020 01:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.52998 * 109.46927 * 240.01000 * 2 1 3 5 5 C 1.52999 * 109.47358 * 174.08270 * 4 2 1 6 6 C 1.50697 * 109.47031 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00550 * 0.02562 * 6 5 4 8 8 C 1.37887 * 119.99826 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99951 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 119.99791 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47582 * 89.99635 * 10 8 6 12 12 H 1.48503 * 109.47189 * 209.99705 * 10 8 6 13 13 H 1.48502 * 109.47369 * 329.99491 * 10 8 6 14 14 N 1.46894 * 109.47641 * 120.00767 * 2 1 3 15 15 C 1.46424 * 111.00059 * 72.98784 * 14 2 1 16 16 C 1.53385 * 108.65532 * 178.85681 * 15 14 2 17 17 H 1.09002 * 109.76968 * 51.32930 * 16 15 14 18 18 N 1.46903 * 109.76927 * 172.06294 * 16 15 14 19 19 C 1.53041 * 107.91578 * 291.72275 * 16 15 14 20 20 C 1.50799 * 109.65508 * 47.30005 * 19 16 15 21 21 C 1.38612 * 118.12446 * 164.55849 * 20 19 16 22 22 C 1.38056 * 120.49087 * 179.73301 * 21 20 19 23 23 C 1.38305 * 119.88581 * 359.97438 * 22 21 20 24 24 C 1.37803 * 119.95700 * 0.13142 * 23 22 21 25 25 C 1.38376 * 122.01402 * 344.50041 * 20 19 16 26 26 H 1.08999 * 109.47662 * 59.99480 * 1 2 3 27 27 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46933 * 299.98855 * 1 2 3 29 29 H 1.08999 * 109.46944 * 294.08428 * 4 2 1 30 30 H 1.09006 * 109.47111 * 54.07950 * 4 2 1 31 31 H 1.08998 * 109.46773 * 299.99358 * 5 4 2 32 32 H 1.08997 * 109.47057 * 59.99218 * 5 4 2 33 33 H 0.96999 * 119.99741 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.60673 * 298.60655 * 15 14 2 35 35 H 1.09000 * 109.60282 * 58.93693 * 15 14 2 36 36 H 1.00899 * 110.99511 * 179.97438 * 18 16 15 37 37 H 1.00904 * 110.99999 * 303.95180 * 18 16 15 38 38 H 1.08995 * 109.44044 * 167.35956 * 19 16 15 39 39 H 1.09003 * 109.44234 * 287.28143 * 19 16 15 40 40 H 1.08006 * 119.75542 * 359.74875 * 21 20 19 41 41 H 1.07998 * 120.05654 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.02546 * 180.10391 * 23 22 21 43 43 H 1.07995 * 119.79589 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2494 5 6 3.5627 -0.5936 -1.3260 6 6 4.0650 -1.3043 -2.5563 7 1 3.3679 -1.7973 -3.2176 8 6 5.4146 -1.3244 -2.8382 9 7 5.8529 -1.9442 -3.9121 10 14 6.6203 -0.4712 -1.6947 11 1 7.0763 -1.4269 -0.6536 12 1 7.7901 0.0058 -2.4753 13 1 5.9531 0.6861 -1.0460 14 7 2.0198 -0.6926 1.1993 15 6 1.8177 -2.1387 1.0894 16 6 2.3720 -2.8089 2.3528 17 1 1.9615 -2.3233 3.2382 18 7 2.0146 -4.2338 2.3570 19 6 3.8947 -2.6560 2.3374 20 6 4.2579 -1.2290 2.0120 21 6 5.5546 -0.8105 2.2663 22 6 5.9415 0.4838 1.9820 23 6 5.0307 1.3717 1.4388 24 6 3.7392 0.9636 1.1852 25 6 3.3413 -0.3434 1.4732 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.7657 -1.7747 -1.1981 30 1 1.5926 -0.2719 -2.1361 31 1 3.8369 0.4601 -1.3774 32 1 4.0100 -1.0426 -0.4393 33 1 6.8023 -1.9586 -4.1101 34 1 0.7529 -2.3533 0.9987 35 1 2.3429 -2.5157 0.2118 36 1 2.3711 -4.6935 3.1813 37 1 1.0162 -4.3564 2.2774 38 1 4.2955 -2.9181 3.3165 39 1 4.3183 -3.3187 1.5828 40 1 6.2678 -1.5023 2.6899 41 1 6.9537 0.8023 2.1826 42 1 5.3314 2.3844 1.2139 43 1 3.0300 1.6592 0.7614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:59 Heat of formation + Delta-G solvation = 12.267087 kcal Electronic energy + Delta-G solvation = -22854.908421 eV Core-core repulsion = 19898.685256 eV Total energy + Delta-G solvation = -2956.223166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.06863 -38.42234 -37.24853 -35.19444 -33.49066 -32.74891 -31.77610 -30.32178 -28.96184 -27.14171 -26.07730 -23.79263 -23.41511 -22.61966 -20.80362 -20.20951 -18.90112 -18.37470 -17.28214 -16.90262 -16.37312 -16.27101 -15.92325 -15.52468 -15.17007 -14.91754 -14.81949 -14.37092 -14.17363 -13.93419 -13.83436 -13.64537 -13.52438 -13.11251 -12.89261 -12.80733 -12.53149 -12.38139 -12.01971 -11.93656 -11.67426 -11.54390 -11.46188 -11.37057 -11.16656 -10.80990 -10.55292 -9.65026 -9.53341 -8.45887 -8.31264 -6.34210 0.52662 0.56317 1.31743 1.33847 1.48377 2.34539 2.61866 3.02067 3.06624 3.50577 3.68732 3.80065 3.90319 4.09994 4.11382 4.27037 4.28882 4.35224 4.42301 4.44106 4.54939 4.67176 4.73754 4.77109 4.80290 4.84245 4.94469 4.97741 5.08662 5.09925 5.13255 5.24473 5.34408 5.36400 5.50668 5.52149 5.62697 5.67129 5.70419 5.91817 6.14474 6.23412 6.26338 6.45181 6.64460 6.73766 7.30432 8.84303 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.008989 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.902593 B = 3114.129281 C = 3521.307232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.073 3.927 3 H 0.095 0.905 4 C -0.131 4.131 5 C -0.003 4.003 6 C -0.526 4.526 7 H 0.027 0.973 8 C 0.008 3.992 9 N -0.953 5.953 10 Si 0.935 3.065 11 H -0.271 1.271 12 H -0.293 1.293 13 H -0.228 1.228 14 N -0.478 5.478 15 C 0.056 3.944 16 C 0.103 3.897 17 H 0.054 0.946 18 N -0.848 5.848 19 C -0.069 4.069 20 C -0.146 4.146 21 C -0.106 4.106 22 C -0.169 4.169 23 C -0.103 4.103 24 C -0.171 4.171 25 C 0.135 3.865 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.013 0.987 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.355 0.645 37 H 0.353 0.647 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 3.517 17.515 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.032 4.032 3 H 0.113 0.887 4 C -0.169 4.169 5 C -0.040 4.040 6 C -0.564 4.564 7 H 0.045 0.955 8 C -0.189 4.189 9 N -0.594 5.594 10 Si 0.759 3.241 11 H -0.197 1.197 12 H -0.219 1.219 13 H -0.151 1.151 14 N -0.191 5.191 15 C -0.071 4.071 16 C -0.009 4.009 17 H 0.071 0.929 18 N -0.381 5.381 19 C -0.106 4.106 20 C -0.149 4.149 21 C -0.125 4.125 22 C -0.188 4.188 23 C -0.121 4.121 24 C -0.191 4.191 25 C 0.036 3.964 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.536 3.552 17.121 19.041 hybrid contribution 0.898 -0.069 -0.158 0.915 sum -6.638 3.483 16.963 18.546 Atomic orbital electron populations 1.21772 0.91812 1.02565 1.02881 1.22194 0.97175 0.98303 0.85577 0.88677 1.22093 0.96660 1.00264 0.97906 1.19633 0.93903 0.95519 0.94914 1.21540 0.92571 1.33504 1.08756 0.95498 1.25929 1.00563 0.95795 0.96597 1.70076 1.15090 1.45711 1.28497 0.85884 0.78146 0.81207 0.78908 1.19660 1.21938 1.15076 1.58512 1.15907 1.09293 1.35420 1.22201 1.01954 0.85264 0.97659 1.21181 0.94367 0.89055 0.96259 0.92852 1.58488 1.20107 1.11175 1.48356 1.20498 0.96050 0.91902 1.02156 1.19642 0.93938 0.95794 1.05564 1.21153 0.95085 0.96591 0.99635 1.21196 1.00456 0.94154 1.02993 1.21159 0.93131 1.00405 0.97451 1.21311 0.97667 0.95668 1.04503 1.18632 0.87998 0.93804 0.95973 0.90986 0.92422 0.90817 0.92898 0.92338 0.96823 0.95738 0.92812 0.88612 0.94470 0.83059 0.83268 0.89167 0.92171 0.85066 0.84642 0.84551 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.25 71.98 0.67 -2.40 16 2 C 0.07 2.22 2.38 44.92 0.11 2.33 16 3 H 0.10 2.84 5.12 -2.39 -0.01 2.83 16 4 C -0.13 -5.14 4.11 30.59 0.13 -5.01 16 5 C 0.00 -0.12 2.50 29.85 0.07 -0.05 16 6 C -0.53 -31.58 9.66 25.60 0.25 -31.33 16 7 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 8 C 0.01 0.46 5.47 84.66 0.46 0.92 16 9 N -0.95 -62.35 13.96 21.45 0.30 -62.05 16 10 Si 0.93 46.85 27.47 68.60 1.88 48.73 16 11 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 13 H -0.23 -10.45 5.82 99.48 0.58 -9.87 16 14 N -0.48 -14.62 4.42 -671.97 -2.97 -17.59 16 15 C 0.06 1.67 4.09 86.52 0.35 2.03 16 16 C 0.10 2.64 3.47 45.06 0.16 2.80 16 17 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 18 N -0.85 -18.00 9.27 -168.08 -1.56 -19.56 16 19 C -0.07 -2.01 5.42 29.89 0.16 -1.85 16 20 C -0.15 -4.88 5.06 -19.71 -0.10 -4.98 16 21 C -0.11 -3.39 9.63 22.32 0.21 -3.18 16 22 C -0.17 -5.21 10.05 22.24 0.22 -4.99 16 23 C -0.10 -3.21 9.33 22.18 0.21 -3.00 16 24 C -0.17 -5.62 7.24 22.50 0.16 -5.45 16 25 C 0.13 4.55 3.43 38.31 0.13 4.68 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.29 6.84 -2.39 -0.02 1.28 16 28 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.05 2.16 5.92 -2.39 -0.01 2.15 16 30 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.01 0.65 6.52 -2.39 -0.02 0.64 16 32 H 0.02 1.19 4.17 -2.39 -0.01 1.18 16 33 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 34 H 0.10 2.45 6.80 -2.39 -0.02 2.44 16 35 H 0.04 1.42 5.62 -2.39 -0.01 1.41 16 36 H 0.36 5.94 9.05 -89.69 -0.81 5.12 16 37 H 0.35 6.09 9.00 -89.69 -0.81 5.29 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 42 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 43 H 0.13 3.99 5.68 -2.91 -0.02 3.97 16 Total: -1.00 -71.67 320.28 0.13 -71.54 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.72 Total: 28.41 kcal Atomic # 6 Polarization: -52.68 SS G_CDS: 3.20 Total: -49.48 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -4.23 Total: -99.20 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.88 Total: 48.73 kcal Total: -71.67 0.13 -71.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.807 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds