Wall clock time and date at job start Mon Mar 30 2020 01:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46989 * 2 1 4 4 C 1.53005 * 109.47068 * 240.00161 * 2 1 3 5 5 C 1.53001 * 109.46738 * 175.00310 * 4 2 1 6 6 C 1.50706 * 109.46769 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00115 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99937 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99920 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99975 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47012 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.46918 * 299.99839 * 10 8 6 13 13 H 1.48498 * 109.47531 * 59.99816 * 10 8 6 14 14 N 1.46896 * 109.46888 * 120.00064 * 2 1 3 15 15 C 1.46896 * 111.00304 * 279.94457 * 14 2 1 16 16 H 1.09002 * 109.25381 * 345.56372 * 15 14 2 17 17 C 1.52769 * 109.25758 * 105.04215 * 15 14 2 18 18 C 1.53326 * 108.34901 * 171.09080 * 17 15 14 19 19 C 1.52722 * 108.43051 * 290.10877 * 18 17 15 20 20 C 1.50721 * 110.57470 * 51.26328 * 19 18 17 21 21 N 1.32695 * 117.56501 * 162.34729 * 20 19 18 22 22 C 1.31518 * 122.40130 * 179.75581 * 21 20 19 23 23 C 1.38235 * 120.60978 * 359.97438 * 22 21 20 24 24 C 1.38406 * 118.84617 * 0.11420 * 23 22 21 25 25 C 1.37556 * 122.32270 * 342.24782 * 20 19 18 26 26 H 1.09007 * 109.47019 * 65.71333 * 1 2 3 27 27 H 1.09005 * 109.47360 * 185.71148 * 1 2 3 28 28 H 1.08991 * 109.47243 * 305.71351 * 1 2 3 29 29 H 1.09001 * 109.47006 * 54.99789 * 4 2 1 30 30 H 1.09004 * 109.47091 * 295.00228 * 4 2 1 31 31 H 1.08998 * 109.47532 * 60.00418 * 5 4 2 32 32 H 1.08996 * 109.47094 * 299.99537 * 5 4 2 33 33 H 0.96995 * 120.00011 * 0.02562 * 9 8 6 34 34 H 1.00905 * 110.99808 * 155.98798 * 14 2 1 35 35 H 1.08995 * 109.69180 * 290.80908 * 17 15 14 36 36 H 1.09007 * 109.69019 * 51.34346 * 17 15 14 37 37 H 1.09005 * 109.66761 * 49.84471 * 18 17 15 38 38 H 1.09004 * 109.67702 * 170.36733 * 18 17 15 39 39 H 1.09005 * 109.25285 * 171.54383 * 19 18 17 40 40 H 1.09000 * 109.25587 * 290.97840 * 19 18 17 41 41 H 1.08004 * 119.69010 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.57528 * 180.13421 * 23 22 21 43 43 H 1.08001 * 120.56936 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6133 -1.3136 6 6 4.0673 -1.3242 -2.5438 7 1 3.3688 -1.8046 -3.2130 8 6 5.4185 -1.3605 -2.8155 9 7 6.2689 -0.7743 -2.0014 10 14 6.0412 -2.2411 -4.3407 11 1 7.5210 -2.1354 -4.4038 12 1 5.6487 -3.6721 -4.2810 13 1 5.4487 -1.6155 -5.5502 14 7 2.0196 -0.6925 1.1994 15 6 1.9718 0.1896 2.3731 16 1 1.8301 1.2189 2.0435 17 6 0.8003 -0.2200 3.2639 18 6 0.9005 0.5580 4.5812 19 6 2.0998 0.0285 5.3647 20 6 3.3336 0.0144 4.4991 21 7 4.5097 -0.0707 5.1077 22 6 5.6457 -0.0952 4.4454 23 6 5.6569 -0.0325 3.0646 24 6 4.4516 0.0590 2.3904 25 6 3.2700 0.0839 3.1268 26 1 -0.3633 0.4227 -0.9368 27 1 -0.3634 -1.0226 0.1023 28 1 -0.3633 0.5998 0.8343 29 1 1.6054 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 3.9995 -1.0729 -0.4260 32 1 3.8532 0.4369 -1.3573 33 1 5.9455 -0.3167 -1.2097 34 1 2.9514 -1.0515 1.0546 35 1 -0.1400 0.0187 2.7670 36 1 0.8482 -1.2904 3.4644 37 1 1.0386 1.6187 4.3713 38 1 -0.0102 0.4142 5.1627 39 1 2.2748 0.6682 6.2298 40 1 1.8877 -0.9851 5.7050 41 1 6.5783 -0.1649 4.9856 42 1 6.5900 -0.0548 2.5212 43 1 4.4280 0.1100 1.3119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:28 Heat of formation + Delta-G solvation = 4.997136 kcal Electronic energy + Delta-G solvation = -21611.445786 eV Core-core repulsion = 18654.907371 eV Total energy + Delta-G solvation = -2956.538414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.71387 -37.80666 -35.93745 -33.79086 -32.86983 -30.75713 -30.43625 -28.99845 -27.74262 -24.68261 -23.98029 -23.18976 -22.14973 -21.34803 -20.02116 -19.56715 -17.04937 -16.60372 -16.41774 -15.95807 -15.11256 -14.72542 -14.28519 -14.18773 -13.75085 -13.65411 -13.32497 -13.01476 -12.73536 -12.62557 -12.52497 -12.31602 -12.08685 -11.86310 -11.48252 -11.23031 -11.09630 -10.88745 -10.83159 -10.52751 -10.28319 -10.15553 -9.99224 -9.69437 -9.60541 -9.31376 -8.82585 -8.56809 -8.37219 -8.08330 -6.40778 -4.09623 1.18157 1.36215 3.41940 3.43378 3.62022 3.82252 4.23908 4.39302 4.51253 4.58440 4.85799 4.88024 5.05218 5.09957 5.23072 5.30192 5.35411 5.37799 5.41869 5.52627 5.58969 5.67942 5.74432 5.77766 5.83941 5.92058 5.93767 6.03634 6.10789 6.22676 6.27288 6.34770 6.39732 6.41826 6.45703 6.72393 6.78734 6.85968 7.28843 7.31054 7.51574 7.70337 8.05431 8.17264 8.41592 8.83745 9.61746 10.99418 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.005289 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.550851 B = 5292.561793 C = 6662.205427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.080 3.920 3 H 0.036 0.964 4 C -0.107 4.107 5 C 0.007 3.993 6 C -0.599 4.599 7 H 0.049 0.951 8 C 0.015 3.985 9 N -0.912 5.912 10 Si 1.067 2.933 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.288 1.288 14 N -0.680 5.680 15 C 0.131 3.869 16 H 0.064 0.936 17 C -0.105 4.105 18 C -0.120 4.120 19 C -0.065 4.065 20 C 0.134 3.866 21 N -0.493 5.493 22 C 0.100 3.900 23 C -0.168 4.168 24 C -0.074 4.074 25 C -0.134 4.134 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.005 0.995 32 H 0.003 0.997 33 H 0.266 0.734 34 H 0.352 0.648 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.155 0.845 42 H 0.139 0.861 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 3.296 12.811 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.054 0.946 4 C -0.145 4.145 5 C -0.030 4.030 6 C -0.637 4.637 7 H 0.067 0.933 8 C -0.188 4.188 9 N -0.548 5.548 10 Si 0.896 3.104 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.215 1.215 14 N -0.316 5.316 15 C 0.021 3.979 16 H 0.082 0.918 17 C -0.144 4.144 18 C -0.159 4.159 19 C -0.103 4.103 20 C -0.001 4.001 21 N -0.202 5.202 22 C -0.059 4.059 23 C -0.188 4.188 24 C -0.101 4.101 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.076 0.924 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.172 0.828 42 H 0.156 0.844 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.748 2.558 12.979 15.330 hybrid contribution -0.412 1.005 -0.423 1.165 sum -8.160 3.562 12.556 15.393 Atomic orbital electron populations 1.21850 0.95366 1.01932 1.00424 1.21765 0.94994 0.95637 0.90557 0.94644 1.21695 0.98692 0.99807 0.94329 1.19281 0.90655 0.95960 0.97096 1.22033 0.94666 1.37744 1.09305 0.93288 1.25840 0.93487 0.96724 1.02765 1.70818 1.37170 1.33212 1.13630 0.83559 0.76201 0.75903 0.74776 1.20770 1.21407 1.21466 1.60779 1.31966 1.36240 1.02643 1.20383 0.90901 0.95823 0.90837 0.91808 1.21645 0.97682 1.00900 0.94141 1.21607 0.97479 1.00130 0.96674 1.20328 0.90247 1.02591 0.97114 1.20948 0.93317 0.95365 0.90519 1.67519 0.98139 1.13058 1.41530 1.22634 0.96078 0.95537 0.91686 1.22178 0.99339 1.01359 0.95888 1.21832 0.92031 0.94890 1.01322 1.20787 0.96141 1.02258 0.94515 0.92881 0.92088 0.93550 0.92462 0.92177 0.97700 0.97921 0.92419 0.82376 0.91139 0.90848 0.91765 0.90838 0.90108 0.89963 0.82819 0.84357 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.10 37.16 0.34 -1.59 16 2 C 0.08 1.34 2.55 -67.71 -0.17 1.16 16 3 H 0.04 0.62 7.51 -51.93 -0.39 0.22 16 4 C -0.11 -2.18 4.78 -26.73 -0.13 -2.30 16 5 C 0.01 0.17 4.06 -27.88 -0.11 0.06 16 6 C -0.60 -16.84 9.11 -34.44 -0.31 -17.15 16 7 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 8 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 9 N -0.91 -27.25 13.65 55.43 0.76 -26.50 16 10 Si 1.07 25.14 29.90 -169.99 -5.08 20.05 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 14 N -0.68 -11.15 6.11 -101.19 -0.62 -11.76 16 15 C 0.13 1.86 2.33 -69.09 -0.16 1.70 16 16 H 0.06 0.92 7.24 -51.93 -0.38 0.55 16 17 C -0.11 -1.25 5.46 -26.68 -0.15 -1.39 16 18 C -0.12 -1.19 5.97 -26.71 -0.16 -1.35 16 19 C -0.07 -0.73 5.92 -28.02 -0.17 -0.90 16 20 C 0.13 1.94 6.62 -82.46 -0.55 1.39 16 21 N -0.49 -7.40 10.19 -9.52 -0.10 -7.50 16 22 C 0.10 1.39 11.19 -17.69 -0.20 1.19 16 23 C -0.17 -2.50 10.12 -39.52 -0.40 -2.90 16 24 C -0.07 -1.21 8.72 -39.15 -0.34 -1.56 16 25 C -0.13 -2.04 5.48 -104.60 -0.57 -2.61 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.57 6.67 -51.93 -0.35 0.23 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.01 0.13 5.46 -51.93 -0.28 -0.16 16 32 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 33 H 0.27 7.81 7.22 -40.82 -0.29 7.51 16 34 H 0.35 6.50 4.13 -39.29 -0.16 6.34 16 35 H 0.07 0.78 6.67 -51.93 -0.35 0.44 16 36 H 0.07 0.93 8.10 -51.92 -0.42 0.51 16 37 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.14 2.49 6.20 -52.49 -0.33 2.16 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -30.40 334.18 -9.97 -40.37 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.79 Total: 6.20 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -3.18 Total: -25.90 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.04 Total: -45.76 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.40 -9.97 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.370 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds