Wall clock time and date at job start Mon Mar 30 2020 01:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46989 * 2 1 4 4 C 1.53005 * 109.47068 * 240.00161 * 2 1 3 5 5 C 1.53001 * 109.46738 * 175.00310 * 4 2 1 6 6 C 1.50706 * 109.46769 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00115 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99937 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99920 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99975 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47012 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.46918 * 299.99839 * 10 8 6 13 13 H 1.48498 * 109.47531 * 59.99816 * 10 8 6 14 14 N 1.46896 * 109.46888 * 120.00064 * 2 1 3 15 15 C 1.46896 * 111.00304 * 279.94457 * 14 2 1 16 16 H 1.09002 * 109.25381 * 345.56372 * 15 14 2 17 17 C 1.52769 * 109.25758 * 105.04215 * 15 14 2 18 18 C 1.53326 * 108.34901 * 171.09080 * 17 15 14 19 19 C 1.52722 * 108.43051 * 290.10877 * 18 17 15 20 20 C 1.50721 * 110.57470 * 51.26328 * 19 18 17 21 21 N 1.32695 * 117.56501 * 162.34729 * 20 19 18 22 22 C 1.31518 * 122.40130 * 179.75581 * 21 20 19 23 23 C 1.38235 * 120.60978 * 359.97438 * 22 21 20 24 24 C 1.38406 * 118.84617 * 0.11420 * 23 22 21 25 25 C 1.37556 * 122.32270 * 342.24782 * 20 19 18 26 26 H 1.09007 * 109.47019 * 65.71333 * 1 2 3 27 27 H 1.09005 * 109.47360 * 185.71148 * 1 2 3 28 28 H 1.08991 * 109.47243 * 305.71351 * 1 2 3 29 29 H 1.09001 * 109.47006 * 54.99789 * 4 2 1 30 30 H 1.09004 * 109.47091 * 295.00228 * 4 2 1 31 31 H 1.08998 * 109.47532 * 60.00418 * 5 4 2 32 32 H 1.08996 * 109.47094 * 299.99537 * 5 4 2 33 33 H 0.96995 * 120.00011 * 0.02562 * 9 8 6 34 34 H 1.00905 * 110.99808 * 155.98798 * 14 2 1 35 35 H 1.08995 * 109.69180 * 290.80908 * 17 15 14 36 36 H 1.09007 * 109.69019 * 51.34346 * 17 15 14 37 37 H 1.09005 * 109.66761 * 49.84471 * 18 17 15 38 38 H 1.09004 * 109.67702 * 170.36733 * 18 17 15 39 39 H 1.09005 * 109.25285 * 171.54383 * 19 18 17 40 40 H 1.09000 * 109.25587 * 290.97840 * 19 18 17 41 41 H 1.08004 * 119.69010 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.57528 * 180.13421 * 23 22 21 43 43 H 1.08001 * 120.56936 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6133 -1.3136 6 6 4.0673 -1.3242 -2.5438 7 1 3.3688 -1.8046 -3.2130 8 6 5.4185 -1.3605 -2.8155 9 7 6.2689 -0.7743 -2.0014 10 14 6.0412 -2.2411 -4.3407 11 1 7.5210 -2.1354 -4.4038 12 1 5.6487 -3.6721 -4.2810 13 1 5.4487 -1.6155 -5.5502 14 7 2.0196 -0.6925 1.1994 15 6 1.9718 0.1896 2.3731 16 1 1.8301 1.2189 2.0435 17 6 0.8003 -0.2200 3.2639 18 6 0.9005 0.5580 4.5812 19 6 2.0998 0.0285 5.3647 20 6 3.3336 0.0144 4.4991 21 7 4.5097 -0.0707 5.1077 22 6 5.6457 -0.0952 4.4454 23 6 5.6569 -0.0325 3.0646 24 6 4.4516 0.0590 2.3904 25 6 3.2700 0.0839 3.1268 26 1 -0.3633 0.4227 -0.9368 27 1 -0.3634 -1.0226 0.1023 28 1 -0.3633 0.5998 0.8343 29 1 1.6054 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 3.9995 -1.0729 -0.4260 32 1 3.8532 0.4369 -1.3573 33 1 5.9455 -0.3167 -1.2097 34 1 2.9514 -1.0515 1.0546 35 1 -0.1400 0.0187 2.7670 36 1 0.8482 -1.2904 3.4644 37 1 1.0386 1.6187 4.3713 38 1 -0.0102 0.4142 5.1627 39 1 2.2748 0.6682 6.2298 40 1 1.8877 -0.9851 5.7050 41 1 6.5783 -0.1649 4.9856 42 1 6.5900 -0.0548 2.5212 43 1 4.4280 0.1100 1.3119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172482482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:27 Heat of formation + Delta-G solvation = -12.493808 kcal Electronic energy + Delta-G solvation = -21612.204250 eV Core-core repulsion = 18654.907371 eV Total energy + Delta-G solvation = -2957.296879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84336 -39.09525 -37.15162 -35.55177 -34.32836 -32.17934 -31.56288 -30.51541 -28.85023 -26.58737 -25.12124 -24.24609 -23.81980 -22.69139 -21.36082 -20.69273 -18.99305 -17.99380 -17.56777 -17.11561 -16.43778 -15.92553 -15.71859 -15.42964 -15.33392 -14.93026 -14.62333 -14.58154 -14.09547 -14.02898 -13.84008 -13.61628 -13.21338 -13.18067 -12.73474 -12.69963 -12.60188 -12.22583 -11.99559 -11.86730 -11.85768 -11.60054 -11.52010 -11.43348 -10.85143 -10.67120 -10.55849 -10.44122 -9.98293 -9.35092 -8.70351 -6.40622 0.04136 0.14295 1.50318 1.58164 1.77546 2.54106 2.66787 3.12312 3.16684 3.22964 3.50904 3.74304 3.78994 3.93219 3.99954 4.11913 4.18288 4.22543 4.27470 4.34678 4.39533 4.51801 4.57321 4.61611 4.80074 4.82041 4.87261 4.90338 4.94415 5.00737 5.01441 5.09057 5.19465 5.23196 5.32986 5.35180 5.41116 5.44303 5.49252 5.66836 5.98851 6.12245 6.17633 6.24864 6.56825 6.91141 7.39963 8.70265 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.005289 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.550851 B = 5292.561793 C = 6662.205427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.086 3.914 3 H 0.026 0.974 4 C -0.097 4.097 5 C 0.014 3.986 6 C -0.620 4.620 7 H 0.048 0.952 8 C -0.036 4.036 9 N -0.934 5.934 10 Si 1.115 2.885 11 H -0.283 1.283 12 H -0.270 1.270 13 H -0.270 1.270 14 N -0.682 5.682 15 C 0.131 3.869 16 H 0.061 0.939 17 C -0.100 4.100 18 C -0.112 4.112 19 C -0.064 4.064 20 C 0.130 3.870 21 N -0.504 5.504 22 C 0.103 3.897 23 C -0.180 4.180 24 C -0.095 4.095 25 C -0.144 4.144 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.054 0.946 31 H -0.005 1.005 32 H -0.020 1.020 33 H 0.255 0.745 34 H 0.336 0.664 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.187 0.813 42 H 0.142 0.858 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 3.114 13.811 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.023 4.023 3 H 0.044 0.956 4 C -0.135 4.135 5 C -0.023 4.023 6 C -0.658 4.658 7 H 0.066 0.934 8 C -0.234 4.234 9 N -0.571 5.571 10 Si 0.936 3.064 11 H -0.208 1.208 12 H -0.196 1.196 13 H -0.195 1.195 14 N -0.316 5.316 15 C 0.021 3.979 16 H 0.079 0.921 17 C -0.138 4.138 18 C -0.150 4.150 19 C -0.102 4.102 20 C -0.006 4.006 21 N -0.213 5.213 22 C -0.056 4.056 23 C -0.199 4.199 24 C -0.122 4.122 25 C -0.147 4.147 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.013 0.987 32 H -0.002 1.002 33 H 0.064 0.936 34 H 0.158 0.842 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.203 0.797 42 H 0.160 0.840 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.385 2.389 13.995 17.019 hybrid contribution 0.126 1.079 -0.708 1.297 sum -9.259 3.468 13.287 16.562 Atomic orbital electron populations 1.21773 0.92444 1.02552 1.01888 1.21690 0.97115 0.94389 0.89152 0.95611 1.21547 0.95481 0.99971 0.96480 1.19168 0.93764 0.93885 0.95523 1.22487 0.95081 1.37836 1.10356 0.93377 1.27353 0.94200 0.96770 1.05048 1.70932 1.37619 1.34558 1.14038 0.82963 0.75694 0.75834 0.71918 1.20841 1.19567 1.19500 1.60936 1.30773 1.36700 1.03188 1.20516 0.91732 0.95312 0.90323 0.92083 1.21617 0.96704 1.00707 0.94739 1.21599 0.98122 0.99699 0.95582 1.20459 0.89162 1.03527 0.97035 1.21518 0.94493 0.94057 0.90502 1.67643 0.98571 1.13458 1.41666 1.23114 0.97165 0.94085 0.91211 1.22314 0.99017 1.01870 0.96747 1.21766 0.93618 0.96584 1.00203 1.20913 0.95943 1.02672 0.95126 0.91976 0.91982 0.91414 0.92359 0.92767 0.98734 1.00169 0.93596 0.84228 0.89898 0.91615 0.91558 0.87822 0.88823 0.89063 0.79656 0.84007 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.10 71.98 0.65 -2.70 16 2 C 0.09 2.89 2.55 44.92 0.11 3.01 16 3 H 0.03 0.92 7.51 -2.39 -0.02 0.90 16 4 C -0.10 -4.01 4.78 30.60 0.15 -3.86 16 5 C 0.01 0.70 4.06 29.85 0.12 0.82 16 6 C -0.62 -35.64 9.11 25.60 0.23 -35.41 16 7 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 8 C -0.04 -2.09 5.46 84.65 0.46 -1.63 16 9 N -0.93 -57.54 13.65 21.45 0.29 -57.25 16 10 Si 1.11 50.57 29.90 68.60 2.05 52.62 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 N -0.68 -22.68 6.11 -474.06 -2.89 -25.57 16 15 C 0.13 3.69 2.33 44.03 0.10 3.79 16 16 H 0.06 1.75 7.24 -2.39 -0.02 1.73 16 17 C -0.10 -2.13 5.46 30.63 0.17 -1.97 16 18 C -0.11 -1.86 5.97 30.61 0.18 -1.68 16 19 C -0.06 -1.28 5.92 29.76 0.18 -1.10 16 20 C 0.13 3.62 6.62 42.27 0.28 3.90 16 21 N -0.50 -14.58 10.19 -184.04 -1.87 -16.45 16 22 C 0.10 2.80 11.19 84.74 0.95 3.75 16 23 C -0.18 -5.55 10.12 22.31 0.23 -5.33 16 24 C -0.10 -3.30 8.72 22.55 0.20 -3.10 16 25 C -0.14 -4.42 5.48 -19.85 -0.11 -4.53 16 26 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.07 1.49 6.67 -2.39 -0.02 1.47 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 31 H -0.01 -0.29 5.46 -2.39 -0.01 -0.30 16 32 H -0.02 -1.11 8.01 -2.39 -0.02 -1.12 16 33 H 0.25 15.77 7.22 -92.71 -0.67 15.10 16 34 H 0.34 13.08 4.13 -89.69 -0.37 12.71 16 35 H 0.08 1.58 6.67 -2.39 -0.02 1.56 16 36 H 0.07 1.53 8.10 -2.38 -0.02 1.51 16 37 H 0.07 1.11 8.10 -2.38 -0.02 1.09 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 42 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 43 H 0.11 4.39 6.20 -2.91 -0.02 4.38 16 Total: -1.00 -66.74 334.18 2.20 -64.54 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.72 Total: 28.15 kcal Atomic # 6 Polarization: -49.94 SS G_CDS: 3.90 Total: -46.04 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -4.48 Total: -99.27 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.05 Total: 52.62 kcal Total: -66.74 2.20 -64.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.046 kcal (2) G-P(sol) polarization free energy of solvation -66.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds