Wall clock time and date at job start Mon Mar 30 2020 01:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47232 * 239.99768 * 2 1 3 5 5 C 1.53001 * 109.47210 * 175.00528 * 4 2 1 6 6 C 1.50700 * 109.47168 * 180.02562 * 5 4 2 7 7 H 1.08007 * 119.99607 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99775 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00375 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99785 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47221 * 59.99479 * 10 8 6 12 12 H 1.48496 * 109.47226 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47206 * 299.99722 * 10 8 6 14 14 N 1.46905 * 109.47138 * 119.99650 * 2 1 3 15 15 C 1.46898 * 111.00155 * 274.23274 * 14 2 1 16 16 H 1.09008 * 109.22462 * 33.37360 * 15 14 2 17 17 C 1.52772 * 109.26000 * 273.91223 * 15 14 2 18 18 C 1.53313 * 108.36936 * 188.81041 * 17 15 14 19 19 C 1.52719 * 108.45728 * 69.78042 * 18 17 15 20 20 C 1.50728 * 110.57842 * 308.67291 * 19 18 17 21 21 N 1.32701 * 117.56674 * 197.81721 * 20 19 18 22 22 C 1.31512 * 122.39522 * 180.66041 * 21 20 19 23 23 C 1.38245 * 120.61158 * 359.97418 * 22 21 20 24 24 C 1.38409 * 118.84069 * 359.86455 * 23 22 21 25 25 C 1.37604 * 122.32654 * 18.18203 * 20 19 18 26 26 H 1.09001 * 109.47020 * 305.13507 * 1 2 3 27 27 H 1.08995 * 109.46974 * 65.13164 * 1 2 3 28 28 H 1.08996 * 109.46829 * 185.13513 * 1 2 3 29 29 H 1.09005 * 109.46725 * 294.99944 * 4 2 1 30 30 H 1.08994 * 109.46922 * 54.99783 * 4 2 1 31 31 H 1.09003 * 109.46447 * 299.99769 * 5 4 2 32 32 H 1.08998 * 109.47336 * 59.99565 * 5 4 2 33 33 H 0.96997 * 120.00074 * 180.02562 * 9 8 6 34 34 H 1.00896 * 110.99861 * 150.27523 * 14 2 1 35 35 H 1.09001 * 109.68542 * 69.08858 * 17 15 14 36 36 H 1.08998 * 109.71210 * 308.54803 * 17 15 14 37 37 H 1.09002 * 109.63450 * 310.09425 * 18 17 15 38 38 H 1.08992 * 109.81090 * 189.57437 * 18 17 15 39 39 H 1.08998 * 109.25613 * 188.38734 * 19 18 17 40 40 H 1.08999 * 109.22376 * 68.93173 * 19 18 17 41 41 H 1.08004 * 119.69492 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.57785 * 179.88455 * 23 22 21 43 43 H 1.08005 * 120.55952 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0672 -1.3234 -2.5443 7 1 3.3687 -1.8038 -3.2135 8 6 5.4185 -1.3604 -2.8155 9 7 6.2691 -0.7758 -2.0005 10 14 6.0412 -2.2410 -4.3407 11 1 5.4495 -1.6146 -5.5502 12 1 7.5211 -2.1362 -4.4033 13 1 5.6479 -3.6718 -4.2815 14 7 2.0197 -0.6924 1.1995 15 6 2.0998 0.2270 2.3424 16 1 1.2980 0.9619 2.2687 17 6 3.4470 0.9468 2.3166 18 6 3.6021 1.7289 3.6261 19 6 3.7914 0.7304 4.7661 20 6 2.7087 -0.3178 4.7374 21 7 2.5135 -1.0294 5.8404 22 6 1.6038 -1.9761 5.9164 23 6 0.8017 -2.2705 4.8296 24 6 0.9705 -1.5493 3.6604 25 6 1.9419 -0.5534 3.6194 26 1 -0.3633 0.5914 0.8404 27 1 -0.3633 0.4322 -0.9323 28 1 -0.3633 -1.0235 0.0920 29 1 1.7517 -1.7716 -1.2054 30 1 1.6054 -0.2618 -2.1369 31 1 3.8532 0.4369 -1.3573 32 1 3.9995 -1.0729 -0.4258 33 1 7.2197 -0.8015 -2.1915 34 1 2.9115 -1.1310 1.0251 35 1 3.4796 1.6350 1.4719 36 1 4.2520 0.2174 2.2270 37 1 2.7068 2.3242 3.8054 38 1 4.4712 2.3837 3.5646 39 1 3.7538 1.2602 5.7179 40 1 4.7627 0.2468 4.6620 41 1 1.4824 -2.5288 6.8363 42 1 0.0561 -3.0493 4.8920 43 1 0.3586 -1.7558 2.7946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:32 Heat of formation + Delta-G solvation = 5.977265 kcal Electronic energy + Delta-G solvation = -21372.467308 eV Core-core repulsion = 18415.971395 eV Total energy + Delta-G solvation = -2956.495913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58798 -37.82426 -35.70801 -33.55244 -32.65632 -30.78679 -30.36243 -29.30823 -27.37528 -25.11713 -23.89842 -23.14321 -22.00550 -21.23032 -19.83957 -19.57111 -16.61218 -16.36377 -16.32216 -15.70240 -15.15471 -14.87618 -14.51431 -14.16264 -13.77375 -13.34239 -13.11511 -12.98354 -12.73015 -12.60387 -12.48147 -12.15215 -11.80303 -11.77529 -11.51175 -11.18988 -11.03843 -10.90057 -10.76429 -10.58424 -10.50020 -10.37933 -9.79399 -9.51230 -9.30419 -9.28196 -9.05854 -8.67694 -8.37673 -8.02651 -6.02833 -4.04960 1.21120 1.44551 3.31733 3.36350 3.38803 3.86169 4.28755 4.43993 4.45570 4.75850 4.88843 4.99572 5.05672 5.22993 5.26069 5.32386 5.33351 5.44578 5.48242 5.60367 5.68230 5.74021 5.83154 5.83933 5.92256 6.01255 6.04896 6.11592 6.21554 6.30933 6.37243 6.38919 6.45617 6.50058 6.56085 6.83075 6.87744 7.04923 7.45288 7.58648 7.76214 7.84521 7.96540 8.09425 8.39885 9.01359 9.59437 11.08230 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.004376 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.581223 B = 6396.367371 C = 6761.577201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.083 3.917 3 H 0.041 0.959 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.681 5.681 15 C 0.131 3.869 16 H 0.084 0.916 17 C -0.150 4.150 18 C -0.114 4.114 19 C -0.068 4.068 20 C 0.133 3.867 21 N -0.497 5.497 22 C 0.097 3.903 23 C -0.189 4.189 24 C -0.044 4.044 25 C -0.113 4.113 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.261 0.739 34 H 0.356 0.644 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.150 0.850 42 H 0.130 0.870 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 2.563 13.297 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 H 0.059 0.941 4 C -0.153 4.153 5 C -0.015 4.015 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.315 5.315 15 C 0.021 3.979 16 H 0.102 0.898 17 C -0.189 4.189 18 C -0.153 4.153 19 C -0.106 4.106 20 C -0.003 4.003 21 N -0.206 5.206 22 C -0.063 4.063 23 C -0.209 4.209 24 C -0.070 4.070 25 C -0.115 4.115 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.178 0.822 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.167 0.833 42 H 0.148 0.852 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.963 2.520 14.187 17.518 hybrid contribution 0.678 -0.311 -1.792 1.941 sum -9.285 2.208 12.395 15.644 Atomic orbital electron populations 1.21826 0.95827 1.01640 1.00261 1.21619 0.94327 0.96338 0.90395 0.94136 1.21836 0.99750 0.99425 0.94274 1.19108 0.88684 0.96828 0.96849 1.21196 0.91931 1.34411 1.08363 0.92783 1.25003 0.97074 0.95570 0.96652 1.69938 1.02413 1.44060 1.37028 0.86679 0.77607 0.80287 0.83558 1.20278 1.21310 1.20237 1.60690 1.35540 1.30990 1.04251 1.20259 0.96889 0.92429 0.88358 0.89772 1.22308 0.98261 1.00426 0.97897 1.21509 1.02236 0.97372 0.94152 1.20358 0.96239 0.94251 0.99707 1.21051 0.95336 0.95371 0.88531 1.67517 1.19030 1.06731 1.27327 1.22560 0.91441 0.94032 0.98238 1.22125 1.02081 1.01989 0.94718 1.21660 0.95608 0.92397 0.97355 1.20468 0.96919 0.98341 0.95782 0.93944 0.92879 0.92357 0.92524 0.92729 0.96950 0.96708 0.92974 0.82152 0.90813 0.90737 0.91787 0.90867 0.90133 0.89887 0.83305 0.85223 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.38 37.16 0.35 -1.53 16 2 C 0.08 1.33 2.44 -67.71 -0.17 1.17 16 3 H 0.04 0.68 7.28 -51.93 -0.38 0.30 16 4 C -0.11 -2.27 4.74 -26.73 -0.13 -2.39 16 5 C 0.02 0.55 4.80 -27.88 -0.13 0.42 16 6 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 7 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 10 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 N -0.68 -10.67 5.20 -101.18 -0.53 -11.19 16 15 C 0.13 1.83 2.28 -69.09 -0.16 1.67 16 16 H 0.08 1.13 7.19 -51.92 -0.37 0.76 16 17 C -0.15 -2.10 5.23 -26.69 -0.14 -2.23 16 18 C -0.11 -1.32 5.97 -26.71 -0.16 -1.48 16 19 C -0.07 -0.83 5.92 -28.01 -0.17 -0.99 16 20 C 0.13 1.87 6.62 -82.43 -0.55 1.32 16 21 N -0.50 -7.11 10.19 -9.51 -0.10 -7.21 16 22 C 0.10 1.18 11.19 -17.69 -0.20 0.98 16 23 C -0.19 -2.19 10.12 -39.52 -0.40 -2.59 16 24 C -0.04 -0.58 9.33 -39.17 -0.37 -0.94 16 25 C -0.11 -1.57 5.55 -104.61 -0.58 -2.15 16 26 H 0.04 0.52 7.56 -51.93 -0.39 0.13 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.01 0.38 6.43 -51.93 -0.33 0.05 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.36 6.45 6.06 -39.29 -0.24 6.21 16 35 H 0.07 1.08 7.65 -51.93 -0.40 0.69 16 36 H 0.07 1.18 7.91 -51.93 -0.41 0.77 16 37 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.14 1.81 7.68 -52.48 -0.40 1.40 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -29.60 340.85 -10.09 -39.68 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.12 Total: 4.73 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -3.20 Total: -21.99 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.11 Total: -44.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.60 -10.09 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.662 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds