Wall clock time and date at job start Mon Mar 30 2020 01:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47232 * 239.99768 * 2 1 3 5 5 C 1.53001 * 109.47210 * 175.00528 * 4 2 1 6 6 C 1.50700 * 109.47168 * 180.02562 * 5 4 2 7 7 H 1.08007 * 119.99607 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99775 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00375 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99785 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47221 * 59.99479 * 10 8 6 12 12 H 1.48496 * 109.47226 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47206 * 299.99722 * 10 8 6 14 14 N 1.46905 * 109.47138 * 119.99650 * 2 1 3 15 15 C 1.46898 * 111.00155 * 274.23274 * 14 2 1 16 16 H 1.09008 * 109.22462 * 33.37360 * 15 14 2 17 17 C 1.52772 * 109.26000 * 273.91223 * 15 14 2 18 18 C 1.53313 * 108.36936 * 188.81041 * 17 15 14 19 19 C 1.52719 * 108.45728 * 69.78042 * 18 17 15 20 20 C 1.50728 * 110.57842 * 308.67291 * 19 18 17 21 21 N 1.32701 * 117.56674 * 197.81721 * 20 19 18 22 22 C 1.31512 * 122.39522 * 180.66041 * 21 20 19 23 23 C 1.38245 * 120.61158 * 359.97418 * 22 21 20 24 24 C 1.38409 * 118.84069 * 359.86455 * 23 22 21 25 25 C 1.37604 * 122.32654 * 18.18203 * 20 19 18 26 26 H 1.09001 * 109.47020 * 305.13507 * 1 2 3 27 27 H 1.08995 * 109.46974 * 65.13164 * 1 2 3 28 28 H 1.08996 * 109.46829 * 185.13513 * 1 2 3 29 29 H 1.09005 * 109.46725 * 294.99944 * 4 2 1 30 30 H 1.08994 * 109.46922 * 54.99783 * 4 2 1 31 31 H 1.09003 * 109.46447 * 299.99769 * 5 4 2 32 32 H 1.08998 * 109.47336 * 59.99565 * 5 4 2 33 33 H 0.96997 * 120.00074 * 180.02562 * 9 8 6 34 34 H 1.00896 * 110.99861 * 150.27523 * 14 2 1 35 35 H 1.09001 * 109.68542 * 69.08858 * 17 15 14 36 36 H 1.08998 * 109.71210 * 308.54803 * 17 15 14 37 37 H 1.09002 * 109.63450 * 310.09425 * 18 17 15 38 38 H 1.08992 * 109.81090 * 189.57437 * 18 17 15 39 39 H 1.08998 * 109.25613 * 188.38734 * 19 18 17 40 40 H 1.08999 * 109.22376 * 68.93173 * 19 18 17 41 41 H 1.08004 * 119.69492 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.57785 * 179.88455 * 23 22 21 43 43 H 1.08005 * 120.55952 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0672 -1.3234 -2.5443 7 1 3.3687 -1.8038 -3.2135 8 6 5.4185 -1.3604 -2.8155 9 7 6.2691 -0.7758 -2.0005 10 14 6.0412 -2.2410 -4.3407 11 1 5.4495 -1.6146 -5.5502 12 1 7.5211 -2.1362 -4.4033 13 1 5.6479 -3.6718 -4.2815 14 7 2.0197 -0.6924 1.1995 15 6 2.0998 0.2270 2.3424 16 1 1.2980 0.9619 2.2687 17 6 3.4470 0.9468 2.3166 18 6 3.6021 1.7289 3.6261 19 6 3.7914 0.7304 4.7661 20 6 2.7087 -0.3178 4.7374 21 7 2.5135 -1.0294 5.8404 22 6 1.6038 -1.9761 5.9164 23 6 0.8017 -2.2705 4.8296 24 6 0.9705 -1.5493 3.6604 25 6 1.9419 -0.5534 3.6194 26 1 -0.3633 0.5914 0.8404 27 1 -0.3633 0.4322 -0.9323 28 1 -0.3633 -1.0235 0.0920 29 1 1.7517 -1.7716 -1.2054 30 1 1.6054 -0.2618 -2.1369 31 1 3.8532 0.4369 -1.3573 32 1 3.9995 -1.0729 -0.4258 33 1 7.2197 -0.8015 -2.1915 34 1 2.9115 -1.1310 1.0251 35 1 3.4796 1.6350 1.4719 36 1 4.2520 0.2174 2.2270 37 1 2.7068 2.3242 3.8054 38 1 4.4712 2.3837 3.5646 39 1 3.7538 1.2602 5.7179 40 1 4.7627 0.2468 4.6620 41 1 1.4824 -2.5288 6.8363 42 1 0.0561 -3.0493 4.8920 43 1 0.3586 -1.7558 2.7946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172482484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:31 Heat of formation + Delta-G solvation = -10.320400 kcal Electronic energy + Delta-G solvation = -21373.174027 eV Core-core repulsion = 18415.971395 eV Total energy + Delta-G solvation = -2957.202633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60743 -39.05037 -36.93571 -35.22902 -34.11172 -32.16649 -31.36358 -30.84107 -28.49504 -26.98335 -24.95037 -24.15761 -23.44876 -22.65017 -21.11036 -20.79626 -18.50892 -17.58352 -17.29282 -16.89978 -16.57310 -16.30756 -16.11115 -15.15839 -14.90542 -14.58664 -14.45724 -14.26584 -14.14657 -13.99317 -13.70529 -13.26407 -13.23966 -13.13643 -12.82567 -12.80285 -12.50683 -12.40694 -12.11026 -11.95349 -11.88244 -11.59835 -11.53053 -11.29898 -10.94317 -10.53775 -10.52213 -10.28368 -9.67281 -9.29679 -8.19800 -6.29968 0.23131 0.44613 1.39192 1.41286 1.49137 2.40500 2.86204 3.13195 3.24111 3.35175 3.71700 3.83015 3.97448 4.10131 4.15408 4.18666 4.27537 4.33185 4.39159 4.46602 4.51126 4.57068 4.75816 4.79935 4.83356 4.86666 4.97721 5.02531 5.03895 5.08331 5.10976 5.19665 5.23205 5.31682 5.38981 5.46015 5.50635 5.55417 5.73420 5.85583 5.87918 6.23496 6.26980 6.39646 6.86601 7.10919 7.39090 8.91018 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.004376 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.581223 B = 6396.367371 C = 6761.577201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.089 3.911 3 H 0.033 0.967 4 C -0.102 4.102 5 C 0.031 3.969 6 C -0.544 4.544 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.269 1.269 14 N -0.678 5.678 15 C 0.138 3.862 16 H 0.094 0.906 17 C -0.147 4.147 18 C -0.105 4.105 19 C -0.066 4.066 20 C 0.115 3.885 21 N -0.518 5.518 22 C 0.091 3.909 23 C -0.183 4.183 24 C -0.055 4.055 25 C -0.127 4.127 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.057 0.943 31 H -0.015 1.015 32 H -0.003 1.003 33 H 0.262 0.738 34 H 0.339 0.661 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.180 0.820 42 H 0.161 0.839 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 2.031 13.648 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.021 4.021 3 H 0.051 0.949 4 C -0.140 4.140 5 C -0.006 4.006 6 C -0.582 4.582 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.194 1.194 14 N -0.309 5.309 15 C 0.027 3.973 16 H 0.112 0.888 17 C -0.186 4.186 18 C -0.143 4.143 19 C -0.103 4.103 20 C -0.019 4.019 21 N -0.228 5.228 22 C -0.068 4.068 23 C -0.203 4.203 24 C -0.081 4.081 25 C -0.130 4.130 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.003 0.997 32 H 0.015 0.985 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.197 0.803 42 H 0.178 0.822 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.486 1.997 14.540 18.637 hybrid contribution 1.136 -0.179 -1.855 2.182 sum -10.350 1.818 12.685 16.472 Atomic orbital electron populations 1.21737 0.93092 1.02288 1.01516 1.21539 0.96289 0.95237 0.88997 0.94896 1.21651 0.96143 0.99822 0.96391 1.18962 0.92093 0.94431 0.95141 1.21675 0.92474 1.34618 1.09399 0.92499 1.25895 0.97384 0.96314 0.99854 1.70071 1.02682 1.45341 1.38910 0.85596 0.77009 0.79289 0.79739 1.19258 1.20951 1.19355 1.60765 1.34278 1.31367 1.04507 1.20238 0.96876 0.92273 0.87898 0.88804 1.22226 0.97616 0.99819 0.98957 1.21463 1.03391 0.97115 0.92368 1.20362 0.95456 0.94107 1.00403 1.21283 0.95864 0.96053 0.88745 1.67555 1.20081 1.07637 1.27505 1.23139 0.90634 0.93440 0.99614 1.22448 1.02152 1.01932 0.93720 1.21815 0.95553 0.92515 0.98209 1.20480 0.97789 0.99146 0.95543 0.92273 0.91969 0.92074 0.92768 0.92476 0.99655 0.98502 0.92915 0.84128 0.92073 0.93417 0.90439 0.89753 0.88888 0.90664 0.80350 0.82183 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.38 71.98 0.68 -2.57 16 2 C 0.09 2.85 2.44 44.92 0.11 2.96 16 3 H 0.03 1.11 7.28 -2.39 -0.02 1.09 16 4 C -0.10 -4.06 4.74 30.59 0.14 -3.92 16 5 C 0.03 1.58 4.80 29.85 0.14 1.72 16 6 C -0.54 -30.70 9.11 25.60 0.23 -30.46 16 7 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 8 C 0.00 0.20 5.46 84.65 0.46 0.66 16 9 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 10 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 N -0.68 -21.44 5.20 -474.02 -2.47 -23.91 16 15 C 0.14 3.83 2.28 44.03 0.10 3.93 16 16 H 0.09 2.42 7.19 -2.38 -0.02 2.41 16 17 C -0.15 -4.26 5.23 30.62 0.16 -4.10 16 18 C -0.10 -2.39 5.97 30.61 0.18 -2.21 16 19 C -0.07 -1.59 5.92 29.76 0.18 -1.41 16 20 C 0.12 3.21 6.62 42.29 0.28 3.49 16 21 N -0.52 -14.26 10.19 -183.99 -1.87 -16.14 16 22 C 0.09 2.02 11.19 84.74 0.95 2.97 16 23 C -0.18 -3.82 10.12 22.31 0.23 -3.59 16 24 C -0.05 -1.36 9.33 22.54 0.21 -1.15 16 25 C -0.13 -3.49 5.55 -19.85 -0.11 -3.60 16 26 H 0.06 1.31 7.56 -2.39 -0.02 1.30 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.00 -0.18 6.43 -2.39 -0.02 -0.19 16 33 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.34 12.83 6.06 -89.70 -0.54 12.28 16 35 H 0.06 1.89 7.65 -2.39 -0.02 1.87 16 36 H 0.05 1.62 7.91 -2.39 -0.02 1.60 16 37 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 43 H 0.14 3.45 7.68 -2.91 -0.02 3.43 16 Total: -1.00 -64.21 340.85 2.35 -61.86 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.43 Total: 25.03 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 3.94 Total: -37.29 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -4.05 Total: -95.89 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -64.21 2.35 -61.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.536 kcal (2) G-P(sol) polarization free energy of solvation -64.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds