Wall clock time and date at job start Mon Mar 30 2020 01:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46786 * 2 1 4 4 C 1.52994 * 109.47408 * 120.00529 * 2 1 3 5 5 C 1.52999 * 109.47262 * 184.99754 * 4 2 1 6 6 C 1.50706 * 109.47419 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99616 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00096 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00103 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00177 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47359 * 90.00112 * 10 8 6 12 12 H 1.48503 * 109.47491 * 210.00061 * 10 8 6 13 13 H 1.48500 * 109.47056 * 330.00380 * 10 8 6 14 14 N 1.46908 * 109.46830 * 240.00721 * 2 1 3 15 15 C 1.46903 * 110.99902 * 84.59902 * 14 2 1 16 16 H 1.08998 * 109.25574 * 327.06304 * 15 14 2 17 17 C 1.52767 * 109.26013 * 86.54703 * 15 14 2 18 18 C 1.53320 * 108.36208 * 171.17163 * 17 15 14 19 19 C 1.52719 * 108.45408 * 290.19384 * 18 17 15 20 20 C 1.50722 * 110.58041 * 51.29213 * 19 18 17 21 21 N 1.32700 * 117.56770 * 162.17200 * 20 19 18 22 22 C 1.31511 * 122.40228 * 179.59719 * 21 20 19 23 23 C 1.38240 * 120.60813 * 359.92733 * 22 21 20 24 24 C 1.38404 * 118.84467 * 0.15354 * 23 22 21 25 25 C 1.37609 * 122.33680 * 342.21767 * 20 19 18 26 26 H 1.09004 * 109.47261 * 304.37161 * 1 2 3 27 27 H 1.08995 * 109.47601 * 64.37397 * 1 2 3 28 28 H 1.09009 * 109.47017 * 184.37526 * 1 2 3 29 29 H 1.09000 * 109.47580 * 305.00129 * 4 2 1 30 30 H 1.09009 * 109.47206 * 65.00048 * 4 2 1 31 31 H 1.08993 * 109.47310 * 300.00366 * 5 4 2 32 32 H 1.08999 * 109.46876 * 60.00023 * 5 4 2 33 33 H 0.96998 * 120.00370 * 179.97438 * 9 8 6 34 34 H 1.00897 * 111.00137 * 320.64283 * 14 2 1 35 35 H 1.09003 * 109.68370 * 51.45489 * 17 15 14 36 36 H 1.08998 * 109.72197 * 290.90937 * 17 15 14 37 37 H 1.09002 * 109.63684 * 170.50413 * 18 17 15 38 38 H 1.08997 * 109.63697 * 49.88583 * 18 17 15 39 39 H 1.09003 * 109.25374 * 291.00631 * 19 18 17 40 40 H 1.09004 * 109.22331 * 171.55937 * 19 18 17 41 41 H 1.07995 * 119.69535 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.57758 * 180.17578 * 23 22 21 43 43 H 1.08009 * 120.56818 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.6134 1.3135 6 6 4.0674 -1.3245 2.5436 7 1 3.3690 -1.8056 3.2123 8 6 5.4185 -1.3607 2.8152 9 7 5.8570 -1.9808 3.8889 10 14 6.6265 -0.5291 1.6582 11 1 6.8312 0.8786 2.0845 12 1 7.9238 -1.2509 1.6946 13 1 6.0849 -0.5539 0.2757 14 7 2.0196 -0.6924 -1.1996 15 6 2.0733 0.2205 -2.3493 16 1 1.2652 0.9475 -2.2691 17 6 3.4132 0.9544 -2.3478 18 6 3.5410 1.7292 -3.6646 19 6 3.7247 0.7251 -4.8005 20 6 2.6545 -0.3350 -4.7488 21 7 2.4510 -1.0562 -5.8440 22 6 1.5477 -2.0103 -5.9018 23 6 0.7628 -2.3040 -4.8024 24 6 0.9417 -1.5741 -3.6401 25 6 1.9014 -0.5663 -3.6206 26 1 -0.3634 0.5802 0.8482 27 1 -0.3634 0.4444 -0.9265 28 1 -0.3633 -1.0248 0.0784 29 1 1.6055 -0.2620 2.1369 30 1 1.7517 -1.7717 1.2054 31 1 3.9994 -1.0728 0.4258 32 1 3.8532 0.4369 1.3572 33 1 6.8077 -2.0067 4.0799 34 1 1.4534 -1.5015 -1.4065 35 1 4.2266 0.2334 -2.2656 36 1 3.4515 1.6484 -1.5082 37 1 4.4055 2.3914 -3.6176 38 1 2.6368 2.3137 -3.8349 39 1 4.7029 0.2531 -4.7084 40 1 3.6666 1.2483 -5.7550 41 1 1.4185 -2.5700 -6.8163 42 1 0.0231 -3.0895 -4.8496 43 1 0.3434 -1.7799 -2.7648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:39 Heat of formation + Delta-G solvation = 14.386104 kcal Electronic energy + Delta-G solvation = -21471.959967 eV Core-core repulsion = 18515.828689 eV Total energy + Delta-G solvation = -2956.131278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.86121 -37.90724 -35.89576 -33.78588 -32.64112 -30.99868 -30.53364 -29.57801 -27.51685 -25.29932 -24.17977 -23.42498 -22.04079 -20.89901 -19.88518 -19.80490 -16.98875 -16.61768 -16.55801 -15.85586 -15.42076 -14.57755 -14.45656 -14.16832 -14.04646 -13.71291 -13.27819 -13.12936 -12.88389 -12.73938 -12.56473 -12.48408 -12.27008 -11.96192 -11.61184 -11.34979 -11.04070 -10.90711 -10.82280 -10.63040 -10.43191 -9.87956 -9.81293 -9.63174 -9.55004 -9.42480 -9.00165 -8.97159 -8.42332 -8.03094 -5.93770 -3.89819 0.99248 1.14003 3.38782 3.46210 3.53900 3.62872 4.10507 4.28421 4.48091 4.56391 4.64088 4.73644 4.86439 5.02173 5.10029 5.14211 5.21457 5.32809 5.38114 5.42145 5.43447 5.50817 5.57669 5.68029 5.76209 5.85136 5.86164 5.95919 6.07203 6.13774 6.16671 6.21174 6.24163 6.46128 6.53318 6.58815 6.69864 7.09630 7.29967 7.51387 7.60622 7.75035 7.88775 7.95162 8.66396 9.12387 9.70536 11.20166 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.005083 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.926928 B = 5507.249187 C = 6088.449217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 H 0.074 0.926 4 C -0.089 4.089 5 C -0.005 4.005 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.669 5.669 15 C 0.133 3.867 16 H 0.055 0.945 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.069 4.069 20 C 0.142 3.858 21 N -0.491 5.491 22 C 0.100 3.900 23 C -0.176 4.176 24 C -0.076 4.076 25 C -0.119 4.119 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.002 0.998 33 H 0.261 0.739 34 H 0.337 0.663 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.154 0.846 42 H 0.134 0.866 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.019 5.086 -19.004 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.043 4.043 6 C -0.555 4.555 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.706 3.294 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.184 1.184 14 N -0.301 5.301 15 C 0.022 3.978 16 H 0.073 0.927 17 C -0.150 4.150 18 C -0.157 4.157 19 C -0.106 4.106 20 C 0.006 3.994 21 N -0.199 5.199 22 C -0.060 4.060 23 C -0.196 4.196 24 C -0.102 4.102 25 C -0.121 4.121 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.021 0.979 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.171 0.829 42 H 0.152 0.848 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.690 5.293 -19.467 22.381 hybrid contribution -0.877 0.051 0.120 0.887 sum -10.567 5.344 -19.347 22.684 Atomic orbital electron populations 1.22547 0.98353 1.01906 1.01316 1.21856 0.91220 0.98475 0.91416 0.90729 1.21445 0.99083 0.98965 0.93242 1.19465 0.91412 0.95823 0.97578 1.21262 0.92802 1.33913 1.07502 0.91467 1.25020 0.98446 0.95109 0.95038 1.69929 1.14410 1.44118 1.26520 0.86787 0.80432 0.79465 0.82745 1.20612 1.21750 1.18437 1.60745 1.58458 1.08478 1.02466 1.20263 0.97841 0.93072 0.86578 0.92721 1.21634 0.97331 0.99245 0.96814 1.21594 1.02342 0.97438 0.94372 1.20385 0.96376 0.93980 0.99888 1.21035 0.94976 0.95200 0.88172 1.67548 1.18327 1.06281 1.27789 1.22625 0.91293 0.93869 0.98194 1.22062 1.01811 1.01448 0.94305 1.21540 0.96492 0.94036 0.98145 1.20583 0.96976 0.97953 0.96619 0.91961 0.93700 0.92607 0.92831 0.92915 0.95021 0.97937 0.92984 0.84224 0.90186 0.90977 0.90581 0.91808 0.89622 0.89986 0.82891 0.84819 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.16 37.16 0.34 -1.88 16 2 C 0.08 1.21 2.39 -67.71 -0.16 1.05 16 3 H 0.07 1.15 7.32 -51.93 -0.38 0.77 16 4 C -0.09 -1.74 4.83 -26.73 -0.13 -1.86 16 5 C -0.01 -0.13 3.93 -27.88 -0.11 -0.24 16 6 C -0.52 -15.05 9.66 -34.44 -0.33 -15.39 16 7 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -28.81 13.96 55.43 0.77 -28.04 16 10 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 14 N -0.67 -9.88 5.50 -101.19 -0.56 -10.43 16 15 C 0.13 1.71 2.31 -69.08 -0.16 1.55 16 16 H 0.06 0.67 7.05 -51.93 -0.37 0.30 16 17 C -0.11 -1.49 5.43 -26.69 -0.14 -1.63 16 18 C -0.12 -1.25 5.97 -26.71 -0.16 -1.41 16 19 C -0.07 -0.76 5.92 -28.02 -0.17 -0.93 16 20 C 0.14 1.84 6.62 -82.44 -0.55 1.29 16 21 N -0.49 -6.41 10.19 -9.51 -0.10 -6.51 16 22 C 0.10 1.07 11.19 -17.69 -0.20 0.88 16 23 C -0.18 -1.76 10.12 -39.52 -0.40 -2.16 16 24 C -0.08 -0.85 8.94 -39.17 -0.35 -1.20 16 25 C -0.12 -1.51 5.55 -104.60 -0.58 -2.09 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.49 7.37 -51.93 -0.38 0.10 16 28 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.03 0.79 6.81 -51.93 -0.35 0.43 16 32 H 0.00 0.06 7.57 -51.93 -0.39 -0.34 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.34 4.58 5.84 -39.29 -0.23 4.35 16 35 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.07 0.98 7.67 -51.93 -0.40 0.58 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 43 H 0.13 1.28 6.64 -52.48 -0.35 0.93 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -32.70 337.23 -9.75 -42.45 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.08 Total: 1.92 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -3.19 Total: -22.20 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.12 Total: -44.98 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.70 -9.75 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.833 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds