Wall clock time and date at job start Mon Mar 30 2020 01:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46786 * 2 1 4 4 C 1.52994 * 109.47408 * 120.00529 * 2 1 3 5 5 C 1.52999 * 109.47262 * 184.99754 * 4 2 1 6 6 C 1.50706 * 109.47419 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99616 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00096 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00103 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00177 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47359 * 90.00112 * 10 8 6 12 12 H 1.48503 * 109.47491 * 210.00061 * 10 8 6 13 13 H 1.48500 * 109.47056 * 330.00380 * 10 8 6 14 14 N 1.46908 * 109.46830 * 240.00721 * 2 1 3 15 15 C 1.46903 * 110.99902 * 84.59902 * 14 2 1 16 16 H 1.08998 * 109.25574 * 327.06304 * 15 14 2 17 17 C 1.52767 * 109.26013 * 86.54703 * 15 14 2 18 18 C 1.53320 * 108.36208 * 171.17163 * 17 15 14 19 19 C 1.52719 * 108.45408 * 290.19384 * 18 17 15 20 20 C 1.50722 * 110.58041 * 51.29213 * 19 18 17 21 21 N 1.32700 * 117.56770 * 162.17200 * 20 19 18 22 22 C 1.31511 * 122.40228 * 179.59719 * 21 20 19 23 23 C 1.38240 * 120.60813 * 359.92733 * 22 21 20 24 24 C 1.38404 * 118.84467 * 0.15354 * 23 22 21 25 25 C 1.37609 * 122.33680 * 342.21767 * 20 19 18 26 26 H 1.09004 * 109.47261 * 304.37161 * 1 2 3 27 27 H 1.08995 * 109.47601 * 64.37397 * 1 2 3 28 28 H 1.09009 * 109.47017 * 184.37526 * 1 2 3 29 29 H 1.09000 * 109.47580 * 305.00129 * 4 2 1 30 30 H 1.09009 * 109.47206 * 65.00048 * 4 2 1 31 31 H 1.08993 * 109.47310 * 300.00366 * 5 4 2 32 32 H 1.08999 * 109.46876 * 60.00023 * 5 4 2 33 33 H 0.96998 * 120.00370 * 179.97438 * 9 8 6 34 34 H 1.00897 * 111.00137 * 320.64283 * 14 2 1 35 35 H 1.09003 * 109.68370 * 51.45489 * 17 15 14 36 36 H 1.08998 * 109.72197 * 290.90937 * 17 15 14 37 37 H 1.09002 * 109.63684 * 170.50413 * 18 17 15 38 38 H 1.08997 * 109.63697 * 49.88583 * 18 17 15 39 39 H 1.09003 * 109.25374 * 291.00631 * 19 18 17 40 40 H 1.09004 * 109.22331 * 171.55937 * 19 18 17 41 41 H 1.07995 * 119.69535 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.57758 * 180.17578 * 23 22 21 43 43 H 1.08009 * 120.56818 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.6134 1.3135 6 6 4.0674 -1.3245 2.5436 7 1 3.3690 -1.8056 3.2123 8 6 5.4185 -1.3607 2.8152 9 7 5.8570 -1.9808 3.8889 10 14 6.6265 -0.5291 1.6582 11 1 6.8312 0.8786 2.0845 12 1 7.9238 -1.2509 1.6946 13 1 6.0849 -0.5539 0.2757 14 7 2.0196 -0.6924 -1.1996 15 6 2.0733 0.2205 -2.3493 16 1 1.2652 0.9475 -2.2691 17 6 3.4132 0.9544 -2.3478 18 6 3.5410 1.7292 -3.6646 19 6 3.7247 0.7251 -4.8005 20 6 2.6545 -0.3350 -4.7488 21 7 2.4510 -1.0562 -5.8440 22 6 1.5477 -2.0103 -5.9018 23 6 0.7628 -2.3040 -4.8024 24 6 0.9417 -1.5741 -3.6401 25 6 1.9014 -0.5663 -3.6206 26 1 -0.3634 0.5802 0.8482 27 1 -0.3634 0.4444 -0.9265 28 1 -0.3633 -1.0248 0.0784 29 1 1.6055 -0.2620 2.1369 30 1 1.7517 -1.7717 1.2054 31 1 3.9994 -1.0728 0.4258 32 1 3.8532 0.4369 1.3572 33 1 6.8077 -2.0067 4.0799 34 1 1.4534 -1.5015 -1.4065 35 1 4.2266 0.2334 -2.2656 36 1 3.4515 1.6484 -1.5082 37 1 4.4055 2.3914 -3.6176 38 1 2.6368 2.3137 -3.8349 39 1 4.7029 0.2531 -4.7084 40 1 3.6666 1.2483 -5.7550 41 1 1.4185 -2.5700 -6.8163 42 1 0.0231 -3.0895 -4.8496 43 1 0.3434 -1.7799 -2.7648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172482490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:38 Heat of formation + Delta-G solvation = -5.862680 kcal Electronic energy + Delta-G solvation = -21472.838020 eV Core-core repulsion = 18515.828689 eV Total energy + Delta-G solvation = -2957.009331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73097 -38.99050 -36.95194 -35.31623 -34.23876 -32.44163 -31.42896 -30.89986 -28.50887 -27.09586 -25.05428 -24.31433 -23.20726 -22.41652 -21.31720 -20.72485 -18.83047 -17.83098 -17.46457 -16.85625 -16.49171 -16.26400 -15.61173 -15.34238 -15.15540 -14.80040 -14.58175 -14.26444 -14.14316 -13.97808 -13.96115 -13.54530 -13.30901 -13.23571 -12.90417 -12.84662 -12.60615 -12.07071 -11.92279 -11.81989 -11.65465 -11.54939 -11.36320 -11.35154 -11.09575 -10.72338 -10.69778 -10.35867 -9.84851 -9.11799 -8.25948 -6.27547 0.15601 0.30195 1.35259 1.38582 1.52756 2.39570 2.77886 3.10797 3.23223 3.31002 3.60459 3.80874 3.90295 4.00431 4.05553 4.19071 4.24956 4.29379 4.36325 4.42496 4.46087 4.55318 4.69308 4.73946 4.83790 4.90201 4.92874 4.97687 4.99530 5.03615 5.08818 5.21597 5.23804 5.28474 5.35378 5.37895 5.45700 5.61447 5.72157 5.77785 5.80517 6.23262 6.35568 6.54658 6.81597 7.04567 7.36965 8.91286 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.005083 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.926928 B = 5507.249187 C = 6088.449217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 H 0.075 0.925 4 C -0.084 4.084 5 C 0.004 3.996 6 C -0.528 4.528 7 H 0.028 0.972 8 C 0.002 3.998 9 N -0.957 5.957 10 Si 0.948 3.052 11 H -0.266 1.266 12 H -0.288 1.288 13 H -0.246 1.246 14 N -0.687 5.687 15 C 0.140 3.860 16 H 0.067 0.933 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.068 4.068 20 C 0.122 3.878 21 N -0.515 5.515 22 C 0.091 3.909 23 C -0.172 4.172 24 C -0.084 4.084 25 C -0.134 4.134 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.025 0.975 32 H 0.006 0.994 33 H 0.264 0.736 34 H 0.342 0.658 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.181 0.819 42 H 0.164 0.836 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 6.059 -21.341 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 H 0.093 0.907 4 C -0.122 4.122 5 C -0.034 4.034 6 C -0.566 4.566 7 H 0.046 0.954 8 C -0.194 4.194 9 N -0.598 5.598 10 Si 0.772 3.228 11 H -0.192 1.192 12 H -0.214 1.214 13 H -0.170 1.170 14 N -0.321 5.321 15 C 0.030 3.970 16 H 0.084 0.916 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.105 4.105 20 C -0.013 4.013 21 N -0.224 5.224 22 C -0.068 4.068 23 C -0.191 4.191 24 C -0.111 4.111 25 C -0.137 4.137 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.025 0.975 33 H 0.072 0.928 34 H 0.164 0.836 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.198 0.802 42 H 0.182 0.818 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.731 6.275 -21.812 25.106 hybrid contribution -0.613 -0.368 0.891 1.143 sum -11.344 5.906 -20.921 24.521 Atomic orbital electron populations 1.22422 0.95607 1.02575 1.02559 1.21602 0.93286 0.97509 0.89555 0.90721 1.21331 0.95939 0.99162 0.95800 1.19342 0.94569 0.94907 0.94565 1.21676 0.92514 1.33773 1.08662 0.95387 1.25987 1.00686 0.95892 0.96784 1.70082 1.15070 1.45968 1.28707 0.85674 0.77549 0.78717 0.80833 1.19157 1.21428 1.16986 1.60645 1.59059 1.09295 1.03065 1.20195 0.97873 0.92889 0.86055 0.91563 1.21628 0.96664 0.98799 0.98162 1.21540 1.03522 0.97133 0.92534 1.20400 0.95635 0.93895 1.00596 1.21287 0.95610 0.95911 0.88485 1.67577 1.19465 1.07261 1.28099 1.23184 0.90628 0.93353 0.99608 1.22409 1.01806 1.01496 0.93402 1.21801 0.96314 0.93772 0.99183 1.20615 0.97890 0.98840 0.96336 0.91555 0.91706 0.92149 0.93207 0.93840 0.95618 0.97550 0.92755 0.83612 0.92980 0.91526 0.89264 0.90613 0.90396 0.88992 0.80227 0.81795 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 9.16 71.98 0.66 -3.09 16 2 C 0.09 2.58 2.39 44.91 0.11 2.68 16 3 H 0.07 2.15 7.32 -2.39 -0.02 2.13 16 4 C -0.08 -3.25 4.83 30.59 0.15 -3.10 16 5 C 0.00 0.17 3.93 29.85 0.12 0.29 16 6 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 7 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 8 C 0.00 0.14 5.47 84.65 0.46 0.60 16 9 N -0.96 -62.08 13.96 21.44 0.30 -61.78 16 10 Si 0.95 46.43 27.47 68.60 1.88 48.32 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 14 N -0.69 -19.27 5.50 -474.05 -2.61 -21.88 16 15 C 0.14 3.36 2.31 44.03 0.10 3.46 16 16 H 0.07 1.44 7.05 -2.39 -0.02 1.43 16 17 C -0.11 -2.89 5.43 30.62 0.17 -2.72 16 18 C -0.11 -2.09 5.97 30.61 0.18 -1.91 16 19 C -0.07 -1.43 5.92 29.76 0.18 -1.25 16 20 C 0.12 3.01 6.62 42.29 0.28 3.29 16 21 N -0.51 -12.68 10.19 -184.01 -1.87 -14.55 16 22 C 0.09 1.76 11.19 84.74 0.95 2.70 16 23 C -0.17 -2.94 10.12 22.31 0.23 -2.71 16 24 C -0.08 -1.70 8.94 22.54 0.20 -1.50 16 25 C -0.13 -3.18 5.55 -19.85 -0.11 -3.29 16 26 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.06 1.18 7.37 -2.39 -0.02 1.16 16 28 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.03 1.26 6.81 -2.39 -0.02 1.25 16 32 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 33 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 34 H 0.34 8.73 5.84 -89.70 -0.52 8.21 16 35 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 36 H 0.07 1.72 7.67 -2.39 -0.02 1.70 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.14 2.43 6.64 -2.91 -0.02 2.41 16 Total: -1.00 -72.00 337.23 2.02 -69.98 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.40 Total: 17.77 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 3.91 Total: -37.85 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -4.18 Total: -98.21 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.88 Total: 48.32 kcal Total: -72.00 2.02 -69.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.118 kcal (2) G-P(sol) polarization free energy of solvation -71.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds