Wall clock time and date at job start Mon Mar 30 2020 01:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47262 * 2 1 4 4 C 1.53000 * 109.47097 * 240.00167 * 2 1 3 5 5 C 1.52999 * 109.47417 * 177.34202 * 4 2 1 6 6 C 1.50698 * 109.47720 * 175.17409 * 5 4 2 7 7 H 1.08001 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00109 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99492 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00281 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46703 * 90.00110 * 10 8 6 12 12 H 1.48491 * 109.47265 * 210.00056 * 10 8 6 13 13 H 1.48504 * 109.46831 * 330.00499 * 10 8 6 14 14 N 1.46899 * 109.47150 * 120.00470 * 2 1 3 15 15 C 1.46426 * 110.99889 * 264.34264 * 14 2 1 16 16 C 1.53384 * 108.65873 * 72.14599 * 15 14 2 17 17 C 1.53042 * 107.94005 * 68.21612 * 16 15 14 18 18 H 1.08999 * 109.40581 * 72.74189 * 17 16 15 19 19 N 1.46892 * 109.44177 * 192.64654 * 17 16 15 20 20 C 1.50803 * 109.66064 * 312.70568 * 17 16 15 21 21 C 1.38617 * 118.12366 * 195.31490 * 20 17 16 22 22 C 1.38052 * 120.48657 * 180.67699 * 21 20 17 23 23 C 1.38311 * 119.89121 * 359.96487 * 22 21 20 24 24 C 1.37807 * 119.95196 * 359.85780 * 23 22 21 25 25 C 1.38376 * 122.01604 * 15.70593 * 20 17 16 26 26 H 1.09004 * 109.46750 * 64.54928 * 1 2 3 27 27 H 1.09001 * 109.47398 * 184.54669 * 1 2 3 28 28 H 1.08991 * 109.46920 * 304.54896 * 1 2 3 29 29 H 1.09006 * 109.47287 * 297.33646 * 4 2 1 30 30 H 1.08999 * 109.47578 * 57.33702 * 4 2 1 31 31 H 1.09002 * 109.46962 * 295.17341 * 5 4 2 32 32 H 1.09008 * 109.47352 * 55.16867 * 5 4 2 33 33 H 0.97007 * 119.99024 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.60603 * 191.89385 * 15 14 2 35 35 H 1.08998 * 109.60613 * 312.39891 * 15 14 2 36 36 H 1.09007 * 109.76070 * 308.61066 * 16 15 14 37 37 H 1.09000 * 109.76974 * 187.83196 * 16 15 14 38 38 H 1.00902 * 111.00455 * 180.19856 * 19 17 16 39 39 H 1.00907 * 110.99742 * 304.14811 * 19 17 16 40 40 H 1.08001 * 119.76029 * 0.64335 * 21 20 17 41 41 H 1.08006 * 120.05528 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.02630 * 179.88580 * 23 22 21 43 43 H 1.08003 * 119.79412 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5685 -0.6636 -1.2832 6 6 4.0761 -1.4738 -2.4481 7 1 3.3783 -1.9797 -3.0989 8 6 5.4314 -1.5702 -2.6823 9 7 5.8743 -2.2769 -3.6993 10 14 6.6385 -0.6958 -1.5563 11 1 7.0187 -1.5996 -0.4411 12 1 7.8519 -0.3219 -2.3262 13 1 6.0041 0.5291 -1.0064 14 7 2.0197 -0.6926 1.1994 15 6 2.3216 0.2605 2.2692 16 6 1.0012 0.8049 2.8285 17 6 0.2895 -0.3391 3.5544 18 1 0.8061 -0.5511 4.4904 19 7 -1.0979 0.0507 3.8391 20 6 0.2963 -1.5725 2.6868 21 6 -0.5654 -2.6074 3.0155 22 6 -0.5895 -3.7645 2.2630 23 6 0.2507 -3.8949 1.1721 24 6 1.1075 -2.8689 0.8371 25 6 1.1352 -1.6956 1.5932 26 1 -0.3633 0.4416 -0.9280 27 1 -0.3634 -1.0244 0.0815 28 1 -0.3633 0.5828 0.8464 29 1 1.7162 -1.7618 -1.2258 30 1 1.6382 -0.2357 -2.1386 31 1 3.8907 0.3719 -1.3931 32 1 3.9683 -1.0719 -0.3549 33 1 6.8279 -2.3450 -3.8638 34 1 2.8748 -0.2428 3.0621 35 1 2.9161 1.0823 1.8698 36 1 0.3771 1.1684 2.0121 37 1 1.2037 1.6160 3.5280 38 1 -1.5891 -0.6870 4.3214 39 1 -1.1311 0.9112 4.3651 40 1 -1.2224 -2.5079 3.8669 41 1 -1.2634 -4.5666 2.5257 42 1 0.2350 -4.8000 0.5830 43 1 1.7622 -2.9733 -0.0155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:35 Heat of formation + Delta-G solvation = 35.872739 kcal Electronic energy + Delta-G solvation = -22198.357448 eV Core-core repulsion = 19243.157900 eV Total energy + Delta-G solvation = -2955.199548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97275 -37.18443 -36.03688 -33.59458 -32.05707 -30.45870 -30.16159 -29.63202 -28.58818 -25.27726 -23.88269 -23.05092 -22.10083 -20.78080 -20.35406 -18.91416 -16.81273 -16.58587 -16.19750 -16.03581 -15.25467 -15.01622 -14.63184 -14.15384 -13.99834 -13.57861 -13.30080 -12.98449 -12.78589 -12.66183 -12.37781 -12.22815 -12.01033 -11.90740 -11.67491 -11.37103 -11.18509 -10.96346 -10.61045 -10.51331 -10.22882 -9.84568 -9.55006 -9.52527 -9.05142 -9.04226 -8.86860 -8.50897 -8.41683 -7.55765 -5.93919 -3.89820 1.53145 1.61884 3.39384 3.45556 3.50639 3.85922 4.02510 4.39124 4.55662 4.62856 4.73440 4.93457 5.07289 5.22520 5.29066 5.33043 5.41902 5.47991 5.48984 5.54169 5.64543 5.73160 5.80936 5.85412 5.96362 6.03591 6.11546 6.28082 6.29917 6.41066 6.50599 6.57088 6.64532 6.75607 6.82171 6.91038 7.05789 7.10570 7.19620 7.34916 7.53360 7.70391 7.73746 7.94144 8.66333 9.12391 9.70378 11.19966 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.005578 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.041178 B = 5018.617319 C = 5533.779858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.076 0.924 4 C -0.098 4.098 5 C -0.009 4.009 6 C -0.515 4.515 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.909 5.909 10 Si 0.881 3.119 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.266 1.266 14 N -0.489 5.489 15 C 0.059 3.941 16 C -0.164 4.164 17 C 0.139 3.861 18 H 0.041 0.959 19 N -0.840 5.840 20 C -0.121 4.121 21 C -0.100 4.100 22 C -0.145 4.145 23 C -0.107 4.107 24 C -0.121 4.121 25 C 0.142 3.858 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.007 0.993 32 H 0.027 0.973 33 H 0.260 0.740 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.340 0.660 39 H 0.340 0.660 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.750 3.791 16.820 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.019 4.019 3 H 0.094 0.906 4 C -0.135 4.135 5 C -0.046 4.046 6 C -0.553 4.553 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.549 5.549 10 Si 0.709 3.291 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.191 1.191 14 N -0.204 5.204 15 C -0.070 4.070 16 C -0.203 4.203 17 C 0.028 3.972 18 H 0.059 0.941 19 N -0.371 5.371 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.164 4.164 23 C -0.126 4.126 24 C -0.141 4.141 25 C 0.045 3.955 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.193 3.623 15.793 20.895 hybrid contribution 0.353 0.570 1.779 1.901 sum -12.840 4.193 17.572 22.163 Atomic orbital electron populations 1.22738 0.96740 1.02917 1.01923 1.21981 0.92711 0.97257 0.89939 0.90567 1.21681 0.98979 0.99619 0.93251 1.19502 0.91351 0.96281 0.97464 1.21225 0.92480 1.30149 1.11412 0.91350 1.25016 0.98437 0.95027 0.95084 1.69937 1.14098 1.41440 1.29393 0.86758 0.80551 0.80858 0.80962 1.20404 1.21800 1.19074 1.58723 1.42643 1.12885 1.06163 1.22255 0.95688 0.95274 0.93759 1.22559 0.98586 0.97342 1.01785 1.20059 0.88833 0.92644 0.95670 0.94089 1.58750 1.14291 1.08437 1.55607 1.19690 0.97561 0.95769 0.99358 1.20695 0.98298 0.93302 0.99640 1.20934 1.00723 0.97892 0.96808 1.21024 0.95909 0.98677 0.96968 1.21492 0.99756 0.91824 1.00989 1.18354 0.90534 0.92854 0.93788 0.92382 0.91749 0.91807 0.92036 0.92683 0.97494 0.95504 0.92984 0.90570 0.89631 0.89060 0.91476 0.84634 0.84729 0.87194 0.86663 0.86068 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 7.98 37.16 0.30 -2.43 16 2 C 0.09 1.41 2.02 -67.71 -0.14 1.27 16 3 H 0.08 1.21 7.45 -51.93 -0.39 0.82 16 4 C -0.10 -1.95 4.60 -26.73 -0.12 -2.07 16 5 C -0.01 -0.21 3.97 -27.88 -0.11 -0.32 16 6 C -0.51 -14.90 9.66 -34.44 -0.33 -15.23 16 7 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 8 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -28.63 13.96 55.43 0.77 -27.86 16 10 Si 0.88 22.43 27.47 -169.99 -4.67 17.77 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 14 N -0.49 -7.90 3.66 -163.75 -0.60 -8.50 16 15 C 0.06 0.78 5.73 -3.88 -0.02 0.76 16 16 C -0.16 -1.84 5.32 -26.51 -0.14 -1.98 16 17 C 0.14 1.53 3.37 -68.80 -0.23 1.30 16 18 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 19 N -0.84 -7.71 9.10 -5.60 -0.05 -7.76 16 20 C -0.12 -1.61 5.18 -104.38 -0.54 -2.15 16 21 C -0.10 -1.22 9.20 -39.51 -0.36 -1.59 16 22 C -0.14 -1.79 10.05 -39.62 -0.40 -2.19 16 23 C -0.11 -1.49 10.03 -39.71 -0.40 -1.89 16 24 C -0.12 -1.97 8.06 -39.23 -0.32 -2.28 16 25 C 0.14 2.21 3.23 -83.85 -0.27 1.94 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.02 5.96 -51.93 -0.31 0.71 16 28 H 0.06 0.89 5.10 -51.93 -0.26 0.62 16 29 H 0.06 1.25 5.30 -51.93 -0.28 0.98 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.01 0.17 7.20 -51.93 -0.37 -0.21 16 32 H 0.03 0.66 6.97 -51.92 -0.36 0.30 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 34 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.09 1.11 7.72 -51.93 -0.40 0.71 16 36 H 0.09 1.12 4.62 -51.93 -0.24 0.88 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.34 2.69 7.33 -39.29 -0.29 2.41 16 39 H 0.34 2.48 8.99 -39.29 -0.35 2.13 16 40 H 0.11 1.07 6.65 -52.49 -0.35 0.72 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.14 2.58 5.98 -52.48 -0.31 2.27 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -31.85 321.18 -9.35 -41.20 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.46 Total: 5.34 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -3.19 Total: -25.03 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.12 Total: -44.11 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.85 -9.35 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.073 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds