Wall clock time and date at job start Mon Mar 30 2020 01:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47262 * 2 1 4 4 C 1.53000 * 109.47097 * 240.00167 * 2 1 3 5 5 C 1.52999 * 109.47417 * 177.34202 * 4 2 1 6 6 C 1.50698 * 109.47720 * 175.17409 * 5 4 2 7 7 H 1.08001 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00109 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99492 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00281 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46703 * 90.00110 * 10 8 6 12 12 H 1.48491 * 109.47265 * 210.00056 * 10 8 6 13 13 H 1.48504 * 109.46831 * 330.00499 * 10 8 6 14 14 N 1.46899 * 109.47150 * 120.00470 * 2 1 3 15 15 C 1.46426 * 110.99889 * 264.34264 * 14 2 1 16 16 C 1.53384 * 108.65873 * 72.14599 * 15 14 2 17 17 C 1.53042 * 107.94005 * 68.21612 * 16 15 14 18 18 H 1.08999 * 109.40581 * 72.74189 * 17 16 15 19 19 N 1.46892 * 109.44177 * 192.64654 * 17 16 15 20 20 C 1.50803 * 109.66064 * 312.70568 * 17 16 15 21 21 C 1.38617 * 118.12366 * 195.31490 * 20 17 16 22 22 C 1.38052 * 120.48657 * 180.67699 * 21 20 17 23 23 C 1.38311 * 119.89121 * 359.96487 * 22 21 20 24 24 C 1.37807 * 119.95196 * 359.85780 * 23 22 21 25 25 C 1.38376 * 122.01604 * 15.70593 * 20 17 16 26 26 H 1.09004 * 109.46750 * 64.54928 * 1 2 3 27 27 H 1.09001 * 109.47398 * 184.54669 * 1 2 3 28 28 H 1.08991 * 109.46920 * 304.54896 * 1 2 3 29 29 H 1.09006 * 109.47287 * 297.33646 * 4 2 1 30 30 H 1.08999 * 109.47578 * 57.33702 * 4 2 1 31 31 H 1.09002 * 109.46962 * 295.17341 * 5 4 2 32 32 H 1.09008 * 109.47352 * 55.16867 * 5 4 2 33 33 H 0.97007 * 119.99024 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.60603 * 191.89385 * 15 14 2 35 35 H 1.08998 * 109.60613 * 312.39891 * 15 14 2 36 36 H 1.09007 * 109.76070 * 308.61066 * 16 15 14 37 37 H 1.09000 * 109.76974 * 187.83196 * 16 15 14 38 38 H 1.00902 * 111.00455 * 180.19856 * 19 17 16 39 39 H 1.00907 * 110.99742 * 304.14811 * 19 17 16 40 40 H 1.08001 * 119.76029 * 0.64335 * 21 20 17 41 41 H 1.08006 * 120.05528 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.02630 * 179.88580 * 23 22 21 43 43 H 1.08003 * 119.79412 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5685 -0.6636 -1.2832 6 6 4.0761 -1.4738 -2.4481 7 1 3.3783 -1.9797 -3.0989 8 6 5.4314 -1.5702 -2.6823 9 7 5.8743 -2.2769 -3.6993 10 14 6.6385 -0.6958 -1.5563 11 1 7.0187 -1.5996 -0.4411 12 1 7.8519 -0.3219 -2.3262 13 1 6.0041 0.5291 -1.0064 14 7 2.0197 -0.6926 1.1994 15 6 2.3216 0.2605 2.2692 16 6 1.0012 0.8049 2.8285 17 6 0.2895 -0.3391 3.5544 18 1 0.8061 -0.5511 4.4904 19 7 -1.0979 0.0507 3.8391 20 6 0.2963 -1.5725 2.6868 21 6 -0.5654 -2.6074 3.0155 22 6 -0.5895 -3.7645 2.2630 23 6 0.2507 -3.8949 1.1721 24 6 1.1075 -2.8689 0.8371 25 6 1.1352 -1.6956 1.5932 26 1 -0.3633 0.4416 -0.9280 27 1 -0.3634 -1.0244 0.0815 28 1 -0.3633 0.5828 0.8464 29 1 1.7162 -1.7618 -1.2258 30 1 1.6382 -0.2357 -2.1386 31 1 3.8907 0.3719 -1.3931 32 1 3.9683 -1.0719 -0.3549 33 1 6.8279 -2.3450 -3.8638 34 1 2.8748 -0.2428 3.0621 35 1 2.9161 1.0823 1.8698 36 1 0.3771 1.1684 2.0121 37 1 1.2037 1.6160 3.5280 38 1 -1.5891 -0.6870 4.3214 39 1 -1.1311 0.9112 4.3651 40 1 -1.2224 -2.5079 3.8669 41 1 -1.2634 -4.5666 2.5257 42 1 0.2350 -4.8000 0.5830 43 1 1.7622 -2.9733 -0.0155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:34 Heat of formation + Delta-G solvation = 14.868068 kcal Electronic energy + Delta-G solvation = -22199.268279 eV Core-core repulsion = 19243.157900 eV Total energy + Delta-G solvation = -2956.110379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.04367 -38.30902 -37.03083 -35.39265 -33.80623 -31.56544 -31.21528 -31.14926 -29.58358 -27.13077 -24.85799 -24.07118 -23.42910 -22.31990 -21.70268 -20.05054 -18.81226 -17.75138 -17.20666 -17.18310 -16.37244 -16.24089 -15.89178 -15.60404 -15.15142 -14.74530 -14.67667 -14.48551 -14.28294 -13.90154 -13.69224 -13.45029 -13.33379 -13.07002 -12.90781 -12.80722 -12.72599 -12.35913 -11.96942 -11.84641 -11.56187 -11.46941 -11.39554 -11.21780 -11.06105 -10.71278 -10.05838 -9.83189 -9.45595 -8.66511 -8.26020 -6.27839 0.49620 0.55221 1.36015 1.37669 1.50331 2.38982 2.78353 2.97972 3.10513 3.60369 3.72621 3.83977 3.86848 4.11717 4.20051 4.23339 4.28365 4.35835 4.45460 4.51298 4.64671 4.65793 4.73367 4.77698 4.81901 4.87813 4.93734 4.97782 5.09919 5.15943 5.21774 5.28659 5.43819 5.50810 5.58427 5.63124 5.71012 5.72409 5.77919 6.00342 6.22061 6.24842 6.34864 6.63316 6.63797 6.80220 7.36205 8.91276 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.005578 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.041178 B = 5018.617319 C = 5533.779858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 H 0.085 0.915 4 C -0.093 4.093 5 C 0.003 3.997 6 C -0.526 4.526 7 H 0.026 0.974 8 C 0.003 3.997 9 N -0.956 5.956 10 Si 0.952 3.048 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.246 1.246 14 N -0.512 5.512 15 C 0.054 3.946 16 C -0.155 4.155 17 C 0.143 3.857 18 H 0.051 0.949 19 N -0.842 5.842 20 C -0.123 4.123 21 C -0.098 4.098 22 C -0.141 4.141 23 C -0.117 4.117 24 C -0.150 4.150 25 C 0.127 3.873 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.010 0.990 32 H 0.024 0.976 33 H 0.264 0.736 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.349 0.651 39 H 0.353 0.647 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.928 5.445 20.202 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 H 0.103 0.897 4 C -0.131 4.131 5 C -0.034 4.034 6 C -0.564 4.564 7 H 0.045 0.955 8 C -0.193 4.193 9 N -0.597 5.597 10 Si 0.776 3.224 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.169 1.169 14 N -0.228 5.228 15 C -0.074 4.074 16 C -0.193 4.193 17 C 0.032 3.968 18 H 0.069 0.931 19 N -0.375 5.375 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.160 4.160 23 C -0.135 4.135 24 C -0.170 4.170 25 C 0.030 3.970 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.146 0.854 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.399 5.287 19.194 24.570 hybrid contribution 0.653 -0.057 0.676 0.941 sum -13.746 5.230 19.869 24.720 Atomic orbital electron populations 1.22591 0.95269 1.02343 1.02773 1.21745 0.93751 0.96792 0.88550 0.89692 1.21564 0.96292 0.99640 0.95561 1.19350 0.94031 0.95097 0.94949 1.21590 0.92226 1.30293 1.12291 0.95527 1.25994 1.00644 0.95909 0.96771 1.70093 1.14780 1.43304 1.31564 0.85628 0.77810 0.80264 0.78721 1.19682 1.21092 1.16898 1.58591 1.43460 1.13824 1.06928 1.22340 0.97102 0.94839 0.93084 1.22458 0.96980 0.97986 1.01914 1.19996 0.90031 0.91421 0.95390 0.93135 1.58674 1.13028 1.09450 1.56381 1.19980 0.96749 0.97232 0.98614 1.21100 0.97942 0.92573 1.00112 1.21267 1.00163 0.98870 0.95670 1.21185 0.95978 0.98423 0.97943 1.21364 1.00872 0.93749 1.01010 1.18390 0.91493 0.92313 0.94781 0.91978 0.93097 0.90295 0.93347 0.93185 0.97131 0.95734 0.92718 0.90439 0.89385 0.90001 0.88953 0.83648 0.83233 0.84075 0.83797 0.85384 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.89 7.98 71.98 0.57 -4.31 16 2 C 0.10 3.14 2.02 44.92 0.09 3.23 16 3 H 0.08 2.58 7.45 -2.39 -0.02 2.56 16 4 C -0.09 -3.83 4.60 30.59 0.14 -3.69 16 5 C 0.00 0.15 3.97 29.85 0.12 0.27 16 6 C -0.53 -31.79 9.66 25.60 0.25 -31.55 16 7 H 0.03 1.77 7.99 -2.91 -0.02 1.74 16 8 C 0.00 0.16 5.47 84.65 0.46 0.62 16 9 N -0.96 -62.28 13.96 21.45 0.30 -61.98 16 10 Si 0.95 46.58 27.47 68.60 1.88 48.46 16 11 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.25 -11.12 6.54 99.48 0.65 -10.46 16 14 N -0.51 -16.25 3.66 -671.97 -2.46 -18.71 16 15 C 0.05 1.33 5.73 86.52 0.50 1.83 16 16 C -0.15 -2.96 5.32 30.74 0.16 -2.79 16 17 C 0.14 2.65 3.37 44.22 0.15 2.80 16 18 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 19 N -0.84 -12.04 9.10 -171.62 -1.56 -13.60 16 20 C -0.12 -3.00 5.18 -19.71 -0.10 -3.10 16 21 C -0.10 -2.10 9.20 22.32 0.21 -1.89 16 22 C -0.14 -3.17 10.05 22.24 0.22 -2.95 16 23 C -0.12 -3.25 10.03 22.18 0.22 -3.03 16 24 C -0.15 -5.07 8.06 22.50 0.18 -4.89 16 25 C 0.13 3.89 3.23 38.30 0.12 4.02 16 26 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.05 1.59 5.96 -2.39 -0.01 1.58 16 28 H 0.08 2.02 5.10 -2.39 -0.01 2.01 16 29 H 0.05 2.12 5.30 -2.38 -0.01 2.11 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.01 0.50 7.20 -2.39 -0.02 0.49 16 32 H 0.02 1.21 6.97 -2.38 -0.02 1.20 16 33 H 0.26 16.04 8.31 -92.70 -0.77 15.27 16 34 H 0.08 1.87 8.11 -2.39 -0.02 1.85 16 35 H 0.09 2.09 7.72 -2.39 -0.02 2.07 16 36 H 0.08 1.75 4.62 -2.38 -0.01 1.74 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.35 3.99 7.33 -89.69 -0.66 3.34 16 39 H 0.35 3.64 8.99 -89.69 -0.81 2.83 16 40 H 0.14 2.10 6.65 -2.91 -0.02 2.08 16 41 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 42 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.10 4.20 5.98 -2.91 -0.02 4.19 16 Total: -1.00 -71.34 321.18 0.97 -70.38 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.49 Total: 20.89 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 3.30 Total: -45.43 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -3.72 Total: -94.29 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.88 Total: 48.46 kcal Total: -71.34 0.97 -70.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.243 kcal (2) G-P(sol) polarization free energy of solvation -71.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds