Wall clock time and date at job start Mon Mar 30 2020 01:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46900 * 2 1 4 4 C 1.53003 * 109.47153 * 239.99835 * 2 1 3 5 5 C 1.52992 * 109.47004 * 174.99901 * 4 2 1 6 6 C 1.50706 * 109.47237 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99630 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00261 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99789 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 119.99805 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47339 * 90.00637 * 10 8 6 12 12 H 1.48511 * 109.47005 * 210.00258 * 10 8 6 13 13 H 1.48498 * 109.47502 * 329.99860 * 10 8 6 14 14 N 1.46899 * 109.46899 * 119.99791 * 2 1 3 15 15 C 1.46901 * 111.00097 * 271.40191 * 14 2 1 16 16 C 1.50701 * 115.54984 * 159.56178 * 15 14 2 17 17 C 1.38281 * 119.92602 * 171.86173 * 16 15 14 18 18 C 1.38101 * 120.07626 * 179.72680 * 17 16 15 19 19 C 1.38914 * 119.92282 * 0.55020 * 18 17 16 20 20 N 1.39674 * 120.07488 * 179.69994 * 19 18 17 21 21 C 1.38910 * 119.85068 * 359.72595 * 19 18 17 22 22 C 1.38102 * 119.92365 * 359.97438 * 21 19 18 23 23 C 1.52998 * 117.49717 * 13.85820 * 15 14 2 24 24 C 1.52994 * 117.49885 * 305.23696 * 15 14 2 25 25 H 1.09007 * 109.46855 * 174.58997 * 1 2 3 26 26 H 1.08998 * 109.47242 * 294.58429 * 1 2 3 27 27 H 1.08993 * 109.47232 * 54.58996 * 1 2 3 28 28 H 1.09000 * 109.46690 * 54.99770 * 4 2 1 29 29 H 1.09002 * 109.46773 * 295.00145 * 4 2 1 30 30 H 1.08997 * 109.47627 * 300.00254 * 5 4 2 31 31 H 1.09000 * 109.47504 * 60.00368 * 5 4 2 32 32 H 0.97009 * 119.99992 * 179.97438 * 9 8 6 33 33 H 1.00909 * 110.99911 * 147.45297 * 14 2 1 34 34 H 1.08003 * 119.96106 * 359.97438 * 17 16 15 35 35 H 1.08007 * 120.04141 * 180.26803 * 18 17 16 36 36 H 0.97000 * 120.00160 * 180.02562 * 20 19 18 37 37 H 0.97007 * 120.00166 * 0.02699 * 20 19 18 38 38 H 1.07997 * 120.03596 * 179.97438 * 21 19 18 39 39 H 1.08001 * 119.96313 * 180.02562 * 22 21 19 40 40 H 1.09001 * 117.49990 * 0.02562 * 23 15 14 41 41 H 1.09000 * 117.49845 * 145.01539 * 23 15 14 42 42 H 1.09004 * 117.49879 * 214.97594 * 24 15 14 43 43 H 1.09000 * 117.49867 * 359.97414 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3232 -2.5445 7 1 3.3687 -1.8030 -3.2139 8 6 5.4185 -1.3602 -2.8158 9 7 5.8567 -1.9793 -3.8901 10 14 6.6265 -0.5297 -1.6582 11 1 7.0614 -1.4972 -0.6190 12 1 7.8089 -0.0644 -2.4270 13 1 5.9700 0.6330 -1.0083 14 7 2.0197 -0.6925 1.1995 15 6 2.1635 0.2411 2.3245 16 6 2.1866 -0.3891 3.6932 17 6 2.4860 0.3808 4.8022 18 6 2.5025 -0.1923 6.0586 19 6 2.2291 -1.5462 6.2063 20 7 2.2511 -2.1304 7.4748 21 6 1.9344 -2.3179 5.0895 22 6 1.9135 -1.7371 3.8367 23 6 1.5054 1.6158 2.1903 24 6 3.0273 1.4846 2.1046 25 1 -0.3633 -1.0232 -0.0969 26 1 -0.3633 0.4275 0.9345 27 1 -0.3633 0.5954 -0.8375 28 1 1.6054 -0.2618 -2.1369 29 1 1.7517 -1.7716 -1.2055 30 1 3.8532 0.4369 -1.3573 31 1 3.9995 -1.0728 -0.4260 32 1 6.8074 -2.0050 -4.0812 33 1 2.8889 -1.1695 1.0121 34 1 2.7033 1.4324 4.6861 35 1 2.7322 0.4105 6.9249 36 1 2.0604 -3.0760 7.5766 37 1 2.4571 -1.5905 8.2539 38 1 1.7218 -3.3709 5.2008 39 1 1.6840 -2.3364 2.9680 40 1 0.9653 1.8273 1.2674 41 1 1.0888 2.0646 3.0920 42 1 3.6121 1.8472 2.9500 43 1 3.4892 1.6098 1.1253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:07 Heat of formation + Delta-G solvation = 44.739097 kcal Electronic energy + Delta-G solvation = -21088.953181 eV Core-core repulsion = 18134.138107 eV Total energy + Delta-G solvation = -2954.815074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03971 -38.40181 -35.41950 -33.92972 -32.68240 -30.98357 -30.09924 -29.30065 -28.28951 -25.28704 -22.93609 -22.59304 -22.22027 -21.14139 -20.00973 -19.00356 -17.38644 -16.94130 -16.78767 -16.12759 -15.44829 -14.79238 -14.46531 -14.16943 -13.87418 -13.37764 -13.33668 -13.21353 -12.96483 -12.60898 -12.43757 -12.11801 -11.97316 -11.53185 -11.41861 -11.20830 -11.15232 -10.93985 -10.79151 -10.60871 -10.41492 -10.02145 -9.85050 -9.68553 -9.43393 -9.17447 -8.84842 -8.53947 -8.03830 -7.38905 -6.04131 -4.01982 1.50828 1.61509 3.30545 3.38087 3.40715 3.72486 3.75563 4.22756 4.35648 4.44956 4.75360 4.91147 5.02875 5.04948 5.16209 5.29621 5.44147 5.49891 5.58346 5.67093 5.73739 5.76190 5.82322 5.89594 6.02221 6.15340 6.17514 6.23156 6.29343 6.33675 6.40461 6.47265 6.55872 6.74117 6.82780 6.87922 6.91981 7.27832 7.32700 7.41363 7.54218 7.61294 7.75793 7.80152 8.54520 9.01487 9.58546 11.09395 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.018407 B = 0.004551 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.777213 B = 6150.884808 C = 6711.090042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 H 0.049 0.951 4 C -0.108 4.108 5 C -0.014 4.014 6 C -0.518 4.518 7 H 0.072 0.928 8 C 0.067 3.933 9 N -0.903 5.903 10 Si 0.878 3.122 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.267 1.267 14 N -0.647 5.647 15 C 0.104 3.896 16 C -0.087 4.087 17 C -0.072 4.072 18 C -0.200 4.200 19 C 0.206 3.794 20 N -0.883 5.883 21 C -0.199 4.199 22 C -0.045 4.045 23 C -0.176 4.176 24 C -0.216 4.216 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.012 0.988 31 H 0.009 0.991 32 H 0.263 0.737 33 H 0.354 0.646 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.396 0.604 37 H 0.395 0.605 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 4.270 21.136 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.036 4.036 3 H 0.067 0.933 4 C -0.146 4.146 5 C -0.052 4.052 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.134 4.134 9 N -0.542 5.542 10 Si 0.706 3.294 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.192 1.192 14 N -0.280 5.280 15 C 0.011 3.989 16 C -0.090 4.090 17 C -0.091 4.091 18 C -0.223 4.223 19 C 0.103 3.897 20 N -0.423 5.423 21 C -0.222 4.222 22 C -0.064 4.064 23 C -0.213 4.213 24 C -0.255 4.255 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.178 0.822 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.224 0.776 37 H 0.222 0.778 38 H 0.136 0.864 39 H 0.154 0.846 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.508 3.995 21.147 23.527 hybrid contribution 1.656 0.759 0.602 1.919 sum -7.852 4.754 21.748 23.606 Atomic orbital electron populations 1.21870 0.95270 1.01946 1.00579 1.21782 0.95041 0.96875 0.89876 0.93307 1.21694 0.98043 1.00102 0.94715 1.19606 0.91920 0.96505 0.97128 1.21125 0.92898 1.34241 1.07362 0.90995 1.25034 0.98421 0.94919 0.95075 1.69917 1.14586 1.43479 1.26256 0.86801 0.80865 0.80517 0.81220 1.20233 1.21432 1.19164 1.60272 1.35696 1.27454 1.04535 1.20018 1.02913 0.85442 0.90534 1.18642 1.04820 0.93931 0.91570 1.20660 0.97640 0.99305 0.91512 1.20420 1.10904 0.93376 0.97594 1.17795 0.94152 0.92151 0.85646 1.42437 1.81763 1.12553 1.05513 1.20616 1.10179 0.99536 0.91858 1.20879 0.94538 0.94256 0.96724 1.23481 0.95541 0.98583 1.03703 1.23683 0.93636 1.04661 1.03564 0.92331 0.92916 0.93069 0.92014 0.91869 0.97012 0.97288 0.92767 0.82247 0.86428 0.86668 0.77648 0.77788 0.86446 0.84625 0.87513 0.88797 0.88757 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.83 37.16 0.33 -1.62 16 2 C 0.07 1.19 2.04 -67.71 -0.14 1.05 16 3 H 0.05 0.80 5.02 -51.93 -0.26 0.54 16 4 C -0.11 -2.10 4.72 -26.73 -0.13 -2.23 16 5 C -0.01 -0.33 3.88 -27.88 -0.11 -0.44 16 6 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 7 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 10 Si 0.88 21.94 27.47 -169.99 -4.67 17.28 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 14 N -0.65 -10.27 5.37 -94.21 -0.51 -10.78 16 15 C 0.10 1.49 3.09 -132.76 -0.41 1.08 16 16 C -0.09 -1.19 5.67 -104.59 -0.59 -1.79 16 17 C -0.07 -0.88 8.79 -39.62 -0.35 -1.23 16 18 C -0.20 -2.23 9.90 -39.38 -0.39 -2.62 16 19 C 0.21 2.25 6.75 -83.79 -0.57 1.69 16 20 N -0.88 -6.72 9.09 32.41 0.29 -6.43 16 21 C -0.20 -2.37 9.90 -39.38 -0.39 -2.76 16 22 C -0.05 -0.61 9.48 -39.61 -0.38 -0.99 16 23 C -0.18 -2.26 8.17 -26.73 -0.22 -2.48 16 24 C -0.22 -3.02 9.15 -26.74 -0.24 -3.27 16 25 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 26 H 0.05 0.70 6.63 -51.93 -0.34 0.35 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 31 H 0.01 0.21 5.87 -51.93 -0.31 -0.10 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.35 6.20 6.54 -39.29 -0.26 5.94 16 34 H 0.12 1.27 6.50 -52.48 -0.34 0.93 16 35 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.40 2.38 8.84 -40.82 -0.36 2.02 16 37 H 0.39 2.27 8.84 -40.82 -0.36 1.91 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.14 1.88 7.29 -52.49 -0.38 1.50 16 40 H 0.11 1.39 4.93 -51.93 -0.26 1.13 16 41 H 0.09 1.07 7.81 -51.93 -0.41 0.66 16 42 H 0.09 1.19 6.86 -51.93 -0.36 0.83 16 43 H 0.10 1.56 7.41 -51.93 -0.38 1.17 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -31.08 336.85 -9.55 -40.63 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.51 Total: 10.37 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -4.01 Total: -28.87 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.56 Total: -44.49 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.08 -9.55 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.372 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds