Wall clock time and date at job start Mon Mar 30 2020 01:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46900 * 2 1 4 4 C 1.53003 * 109.47153 * 239.99835 * 2 1 3 5 5 C 1.52992 * 109.47004 * 174.99901 * 4 2 1 6 6 C 1.50706 * 109.47237 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99630 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00261 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99789 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 119.99805 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47339 * 90.00637 * 10 8 6 12 12 H 1.48511 * 109.47005 * 210.00258 * 10 8 6 13 13 H 1.48498 * 109.47502 * 329.99860 * 10 8 6 14 14 N 1.46899 * 109.46899 * 119.99791 * 2 1 3 15 15 C 1.46901 * 111.00097 * 271.40191 * 14 2 1 16 16 C 1.50701 * 115.54984 * 159.56178 * 15 14 2 17 17 C 1.38281 * 119.92602 * 171.86173 * 16 15 14 18 18 C 1.38101 * 120.07626 * 179.72680 * 17 16 15 19 19 C 1.38914 * 119.92282 * 0.55020 * 18 17 16 20 20 N 1.39674 * 120.07488 * 179.69994 * 19 18 17 21 21 C 1.38910 * 119.85068 * 359.72595 * 19 18 17 22 22 C 1.38102 * 119.92365 * 359.97438 * 21 19 18 23 23 C 1.52998 * 117.49717 * 13.85820 * 15 14 2 24 24 C 1.52994 * 117.49885 * 305.23696 * 15 14 2 25 25 H 1.09007 * 109.46855 * 174.58997 * 1 2 3 26 26 H 1.08998 * 109.47242 * 294.58429 * 1 2 3 27 27 H 1.08993 * 109.47232 * 54.58996 * 1 2 3 28 28 H 1.09000 * 109.46690 * 54.99770 * 4 2 1 29 29 H 1.09002 * 109.46773 * 295.00145 * 4 2 1 30 30 H 1.08997 * 109.47627 * 300.00254 * 5 4 2 31 31 H 1.09000 * 109.47504 * 60.00368 * 5 4 2 32 32 H 0.97009 * 119.99992 * 179.97438 * 9 8 6 33 33 H 1.00909 * 110.99911 * 147.45297 * 14 2 1 34 34 H 1.08003 * 119.96106 * 359.97438 * 17 16 15 35 35 H 1.08007 * 120.04141 * 180.26803 * 18 17 16 36 36 H 0.97000 * 120.00160 * 180.02562 * 20 19 18 37 37 H 0.97007 * 120.00166 * 0.02699 * 20 19 18 38 38 H 1.07997 * 120.03596 * 179.97438 * 21 19 18 39 39 H 1.08001 * 119.96313 * 180.02562 * 22 21 19 40 40 H 1.09001 * 117.49990 * 0.02562 * 23 15 14 41 41 H 1.09000 * 117.49845 * 145.01539 * 23 15 14 42 42 H 1.09004 * 117.49879 * 214.97594 * 24 15 14 43 43 H 1.09000 * 117.49867 * 359.97414 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3232 -2.5445 7 1 3.3687 -1.8030 -3.2139 8 6 5.4185 -1.3602 -2.8158 9 7 5.8567 -1.9793 -3.8901 10 14 6.6265 -0.5297 -1.6582 11 1 7.0614 -1.4972 -0.6190 12 1 7.8089 -0.0644 -2.4270 13 1 5.9700 0.6330 -1.0083 14 7 2.0197 -0.6925 1.1995 15 6 2.1635 0.2411 2.3245 16 6 2.1866 -0.3891 3.6932 17 6 2.4860 0.3808 4.8022 18 6 2.5025 -0.1923 6.0586 19 6 2.2291 -1.5462 6.2063 20 7 2.2511 -2.1304 7.4748 21 6 1.9344 -2.3179 5.0895 22 6 1.9135 -1.7371 3.8367 23 6 1.5054 1.6158 2.1903 24 6 3.0273 1.4846 2.1046 25 1 -0.3633 -1.0232 -0.0969 26 1 -0.3633 0.4275 0.9345 27 1 -0.3633 0.5954 -0.8375 28 1 1.6054 -0.2618 -2.1369 29 1 1.7517 -1.7716 -1.2055 30 1 3.8532 0.4369 -1.3573 31 1 3.9995 -1.0728 -0.4260 32 1 6.8074 -2.0050 -4.0812 33 1 2.8889 -1.1695 1.0121 34 1 2.7033 1.4324 4.6861 35 1 2.7322 0.4105 6.9249 36 1 2.0604 -3.0760 7.5766 37 1 2.4571 -1.5905 8.2539 38 1 1.7218 -3.3709 5.2008 39 1 1.6840 -2.3364 2.9680 40 1 0.9653 1.8273 1.2674 41 1 1.0888 2.0646 3.0920 42 1 3.6121 1.8472 2.9500 43 1 3.4892 1.6098 1.1253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:06 Heat of formation + Delta-G solvation = 25.278283 kcal Electronic energy + Delta-G solvation = -21089.797065 eV Core-core repulsion = 18134.138107 eV Total energy + Delta-G solvation = -2955.658958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05008 -39.41039 -36.74876 -35.06827 -34.47436 -32.20432 -31.58694 -30.43487 -29.18982 -27.13465 -23.94838 -23.50026 -23.23706 -22.85708 -21.33737 -20.16687 -18.99345 -18.20420 -17.74214 -17.13170 -16.64166 -16.35224 -15.86208 -15.42100 -14.98899 -14.82076 -14.62889 -14.26079 -14.11421 -13.99927 -13.79383 -13.45782 -13.23132 -13.01367 -12.86356 -12.53132 -12.35609 -12.20121 -11.96033 -11.85727 -11.74392 -11.56364 -11.53928 -11.30449 -11.09496 -10.79206 -10.74088 -9.74152 -9.22527 -8.31214 -8.20018 -6.34759 0.62321 0.71450 1.32992 1.33757 1.45270 2.33094 2.76701 3.03370 3.09272 3.11561 3.32643 3.72993 3.90569 4.02341 4.13141 4.16113 4.23641 4.28280 4.41521 4.60457 4.71063 4.72193 4.77706 4.83281 4.88111 4.96055 5.01752 5.04330 5.09609 5.13689 5.20273 5.28983 5.43599 5.48152 5.51083 5.53720 5.65045 5.67301 5.88364 6.06865 6.27640 6.29413 6.44384 6.68133 6.73464 7.07403 7.29653 8.85795 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.018407 B = 0.004551 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.777213 B = 6150.884808 C = 6711.090042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.083 3.917 3 H 0.051 0.949 4 C -0.100 4.100 5 C -0.006 4.006 6 C -0.530 4.530 7 H 0.032 0.968 8 C 0.006 3.994 9 N -0.951 5.951 10 Si 0.949 3.051 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.249 1.249 14 N -0.649 5.649 15 C 0.092 3.908 16 C -0.106 4.106 17 C -0.075 4.075 18 C -0.205 4.205 19 C 0.207 3.793 20 N -0.871 5.871 21 C -0.211 4.211 22 C -0.062 4.062 23 C -0.162 4.162 24 C -0.220 4.220 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.013 0.987 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.342 0.658 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.405 0.595 37 H 0.406 0.594 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 5.776 24.364 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.026 4.026 3 H 0.068 0.932 4 C -0.138 4.138 5 C -0.043 4.043 6 C -0.568 4.568 7 H 0.050 0.950 8 C -0.191 4.191 9 N -0.592 5.592 10 Si 0.772 3.228 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.173 1.173 14 N -0.281 5.281 15 C 0.000 4.000 16 C -0.109 4.109 17 C -0.094 4.094 18 C -0.227 4.227 19 C 0.101 3.899 20 N -0.411 5.411 21 C -0.234 4.234 22 C -0.081 4.081 23 C -0.199 4.199 24 C -0.259 4.259 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.234 0.766 37 H 0.235 0.765 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.682 5.499 24.413 26.833 hybrid contribution 1.655 0.207 -0.402 1.716 sum -8.027 5.706 24.011 25.952 Atomic orbital electron populations 1.21805 0.93358 1.02048 1.01740 1.21664 0.96423 0.96184 0.88378 0.93165 1.21560 0.95503 1.00052 0.96649 1.19499 0.94480 0.95551 0.94818 1.21492 0.92625 1.34167 1.08540 0.94995 1.25990 1.00623 0.95659 0.96834 1.70069 1.15271 1.45336 1.28486 0.85682 0.78123 0.79995 0.78985 1.19216 1.20946 1.17291 1.60310 1.34940 1.28047 1.04754 1.20134 1.03970 0.85611 0.90304 1.18677 1.06442 0.94181 0.91610 1.20826 0.97240 0.99878 0.91416 1.20714 1.10302 0.93685 0.98047 1.17911 0.93203 0.92281 0.86473 1.42420 1.80640 1.13230 1.04785 1.20764 1.10504 1.00338 0.91751 1.20872 0.95714 0.94476 0.97056 1.23535 0.94714 0.97204 1.04466 1.23661 0.94515 1.04705 1.03050 0.92810 0.91686 0.91904 0.92431 0.92904 0.96918 0.96553 0.92514 0.83688 0.85102 0.84377 0.76629 0.76457 0.85321 0.86005 0.87636 0.86910 0.87295 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.83 71.98 0.64 -2.88 16 2 C 0.08 2.61 2.04 44.92 0.09 2.70 16 3 H 0.05 1.59 5.02 -2.39 -0.01 1.58 16 4 C -0.10 -3.93 4.72 30.59 0.14 -3.78 16 5 C -0.01 -0.28 3.88 29.85 0.12 -0.17 16 6 C -0.53 -31.14 9.66 25.60 0.25 -30.89 16 7 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 8 C 0.01 0.34 5.47 84.65 0.46 0.80 16 9 N -0.95 -60.66 13.96 21.45 0.30 -60.37 16 10 Si 0.95 45.29 27.47 68.60 1.88 47.17 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 14 N -0.65 -20.28 5.37 -451.97 -2.43 -22.70 16 15 C 0.09 2.52 3.09 2.78 0.01 2.53 16 16 C -0.11 -2.77 5.67 -19.84 -0.11 -2.88 16 17 C -0.07 -1.63 8.79 22.25 0.20 -1.44 16 18 C -0.20 -3.96 9.90 22.40 0.22 -3.74 16 19 C 0.21 4.01 6.75 38.21 0.26 4.27 16 20 N -0.87 -10.69 9.09 -51.37 -0.47 -11.16 16 21 C -0.21 -4.73 9.90 22.40 0.22 -4.51 16 22 C -0.06 -1.65 9.48 22.25 0.21 -1.44 16 23 C -0.16 -3.78 8.17 30.59 0.25 -3.53 16 24 C -0.22 -5.74 9.15 30.59 0.28 -5.46 16 25 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.06 1.59 6.63 -2.39 -0.02 1.57 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 31 H 0.02 0.75 5.87 -2.39 -0.01 0.74 16 32 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 33 H 0.34 11.96 6.54 -89.69 -0.59 11.38 16 34 H 0.13 2.42 6.50 -2.91 -0.02 2.40 16 35 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.40 3.76 8.84 -92.71 -0.82 2.94 16 37 H 0.41 3.33 8.84 -92.70 -0.82 2.51 16 38 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.12 3.44 7.29 -2.91 -0.02 3.42 16 40 H 0.11 2.49 4.93 -2.39 -0.01 2.48 16 41 H 0.11 2.21 7.81 -2.39 -0.02 2.19 16 42 H 0.11 2.47 6.86 -2.39 -0.02 2.46 16 43 H 0.08 2.38 7.41 -2.39 -0.02 2.36 16 Total: -1.00 -67.93 336.85 1.28 -66.65 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -1.24 Total: 30.80 kcal Atomic # 6 Polarization: -53.64 SS G_CDS: 3.23 Total: -50.41 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -2.59 Total: -94.22 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -67.93 1.28 -66.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.932 kcal (2) G-P(sol) polarization free energy of solvation -67.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds