Wall clock time and date at job start Mon Mar 30 2020 01:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47181 * 2 1 4 4 C 1.52999 * 109.46639 * 240.00267 * 2 1 3 5 5 C 1.53006 * 109.46871 * 174.99899 * 4 2 1 6 6 C 1.50701 * 109.47120 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00161 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00024 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99831 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00108 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46906 * 59.99825 * 10 8 6 12 12 H 1.48494 * 109.47537 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47245 * 300.00445 * 10 8 6 14 14 N 1.46900 * 109.47064 * 120.00416 * 2 1 3 15 15 C 1.46896 * 110.99937 * 274.99802 * 14 2 1 16 16 H 1.08997 * 109.47523 * 35.00111 * 15 14 2 17 17 C 1.50706 * 109.47019 * 155.00278 * 15 14 2 18 18 C 1.38223 * 119.61677 * 239.42944 * 17 15 14 19 19 C 1.38625 * 119.16397 * 179.70155 * 18 17 15 20 20 C 1.38685 * 118.41583 * 0.51274 * 19 18 17 21 21 C 1.38183 * 119.16102 * 359.50869 * 20 19 18 22 22 N 1.31856 * 119.61907 * 59.40453 * 17 15 14 23 23 C 1.52996 * 109.47049 * 274.99800 * 15 14 2 24 24 C 1.53000 * 117.50312 * 242.39426 * 23 15 14 25 25 C 1.52991 * 60.00132 * 252.51189 * 24 23 15 26 26 H 1.08991 * 109.47699 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46758 * 300.00121 * 1 2 3 28 28 H 1.09000 * 109.47077 * 59.99187 * 1 2 3 29 29 H 1.08992 * 109.47792 * 294.99861 * 4 2 1 30 30 H 1.09001 * 109.47157 * 55.00871 * 4 2 1 31 31 H 1.09003 * 109.47554 * 300.00220 * 5 4 2 32 32 H 1.09003 * 109.46701 * 60.00062 * 5 4 2 33 33 H 0.96995 * 119.99948 * 179.97438 * 9 8 6 34 34 H 1.00899 * 110.99529 * 151.04446 * 14 2 1 35 35 H 1.08007 * 120.42085 * 359.95708 * 18 17 15 36 36 H 1.07993 * 120.79387 * 180.27221 * 19 18 17 37 37 H 1.07995 * 120.41516 * 179.77850 * 20 19 18 38 38 H 1.08002 * 119.61238 * 180.24973 * 21 20 19 39 39 H 1.09001 * 115.55433 * 28.10490 * 23 15 14 40 40 H 1.09001 * 117.49367 * 0.02562 * 24 23 15 41 41 H 1.09001 * 117.50111 * 145.01877 * 24 23 15 42 42 H 1.09002 * 117.49814 * 252.50518 * 25 24 23 43 43 H 1.09006 * 117.52242 * 107.48221 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0670 -1.3231 -2.5447 7 1 3.3685 -1.8028 -3.2142 8 6 5.4183 -1.3600 -2.8161 9 7 6.2689 -0.7754 -2.0010 10 14 6.0409 -2.2405 -4.3413 11 1 5.4491 -1.6140 -5.5507 12 1 7.5208 -2.1356 -4.4041 13 1 5.6476 -3.6711 -4.2823 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2224 2.3469 16 1 1.2577 0.9328 2.2908 17 6 1.9787 -0.5679 3.6258 18 6 0.9446 -0.3102 4.5061 19 6 0.8545 -1.0471 5.6768 20 6 1.8186 -2.0127 5.9246 21 6 2.8238 -2.2139 4.9981 22 7 2.8750 -1.4976 3.8920 23 6 3.4111 0.9806 2.3224 24 6 4.3667 0.7699 3.4986 25 6 3.6097 2.0916 3.3553 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.7516 -1.7714 -1.2058 30 1 1.6053 -0.2615 -2.1370 31 1 3.8532 0.4370 -1.3574 32 1 3.9994 -1.0728 -0.4261 33 1 7.2196 -0.8017 -2.1917 34 1 2.9173 -1.1206 1.0286 35 1 0.2135 0.4528 4.2826 36 1 0.0550 -0.8707 6.3810 37 1 1.7816 -2.6030 6.8283 38 1 3.5761 -2.9668 5.1818 39 1 3.8513 1.1262 1.3359 40 1 4.0488 0.0907 4.2897 41 1 5.4357 0.7765 3.2860 42 1 4.1807 2.9680 3.0486 43 1 2.7935 2.2828 4.0522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:29 Heat of formation + Delta-G solvation = 52.431739 kcal Electronic energy + Delta-G solvation = -21348.416399 eV Core-core repulsion = 18393.934903 eV Total energy + Delta-G solvation = -2954.481496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51172 -37.92623 -36.04048 -33.20578 -32.42477 -32.03712 -30.23665 -29.04055 -25.84260 -24.73277 -23.53924 -22.62715 -22.00194 -21.38047 -19.98470 -19.37155 -16.89755 -16.28301 -16.14887 -16.04022 -15.49376 -15.01634 -14.48308 -14.31074 -13.93123 -13.37027 -13.24517 -12.93636 -12.61588 -12.45860 -12.24254 -11.84772 -11.75029 -11.37978 -11.31010 -11.26124 -11.05623 -10.86024 -10.48040 -10.30645 -10.18012 -9.79529 -9.70074 -9.66712 -9.26441 -9.21167 -9.03023 -8.91238 -8.30573 -7.90333 -5.95790 -3.97647 1.15626 1.32912 3.36413 3.40577 3.43334 3.83017 3.98348 4.39072 4.49757 4.62240 4.83805 4.87694 4.97876 5.07919 5.16238 5.24851 5.30205 5.40054 5.54456 5.59036 5.68399 5.71744 5.73834 5.82888 5.89375 5.96753 6.14884 6.19270 6.20164 6.21715 6.36459 6.39710 6.47083 6.54537 6.60500 6.77110 6.95612 7.13722 7.54114 7.67754 7.85574 7.98723 8.05877 8.15022 8.47411 9.08652 9.66102 11.15264 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.004476 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.687817 B = 6253.954761 C = 6550.238972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.021 3.979 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.671 5.671 15 C 0.167 3.833 16 H 0.088 0.912 17 C 0.160 3.840 18 C -0.170 4.170 19 C -0.078 4.078 20 C -0.185 4.185 21 C 0.097 3.903 22 N -0.456 5.456 23 C -0.174 4.174 24 C -0.166 4.166 25 C -0.186 4.186 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.011 0.989 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.363 0.637 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.201 2.745 16.114 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.059 0.941 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 N -0.305 5.305 15 C 0.056 3.944 16 H 0.106 0.894 17 C 0.022 3.978 18 C -0.191 4.191 19 C -0.104 4.104 20 C -0.205 4.205 21 C -0.060 4.060 22 N -0.165 5.165 23 C -0.194 4.194 24 C -0.203 4.203 25 C -0.224 4.224 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.187 0.813 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.170 0.830 39 H 0.134 0.866 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.956 2.358 15.671 18.715 hybrid contribution 0.575 0.175 -0.380 0.711 sum -9.381 2.532 15.291 18.117 Atomic orbital electron populations 1.21809 0.95881 1.01670 1.00076 1.21637 0.94329 0.96390 0.90485 0.94108 1.21824 0.99776 0.99426 0.94185 1.19122 0.88696 0.96765 0.96983 1.21196 0.91917 1.34373 1.08293 0.92811 1.25006 0.97080 0.95611 0.96624 1.69950 1.02341 1.44084 1.36984 0.86683 0.77559 0.80310 0.83594 1.20336 1.21355 1.20249 1.60630 1.35671 1.30765 1.03463 1.20012 0.95291 0.91069 0.88040 0.89414 1.21153 0.89541 0.92315 0.94771 1.21926 0.99799 1.01797 0.95561 1.21487 0.97919 0.94504 0.96513 1.22084 0.96864 1.00151 1.01379 1.22815 0.96850 0.96926 0.89415 1.67605 1.25647 1.04549 1.18740 1.23143 0.98385 1.01630 0.96235 1.23131 0.97892 0.98475 1.00760 1.22917 1.03534 0.93041 1.02911 0.92441 0.93923 0.92978 0.92523 0.92756 0.97034 0.96418 0.93043 0.81316 0.85242 0.85279 0.85269 0.82971 0.86605 0.88201 0.89141 0.89106 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.40 37.16 0.35 -1.65 16 2 C 0.08 1.41 2.46 -67.71 -0.17 1.24 16 3 H 0.04 0.73 7.57 -51.93 -0.39 0.33 16 4 C -0.11 -2.38 4.74 -26.73 -0.13 -2.51 16 5 C 0.02 0.55 4.80 -27.88 -0.13 0.42 16 6 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 7 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 10 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 N -0.67 -11.72 6.03 -100.96 -0.61 -12.33 16 15 C 0.17 2.52 2.46 -68.87 -0.17 2.35 16 16 H 0.09 1.21 6.83 -51.93 -0.35 0.86 16 17 C 0.16 2.29 4.52 -82.58 -0.37 1.91 16 18 C -0.17 -2.00 9.71 -39.44 -0.38 -2.38 16 19 C -0.08 -0.78 10.18 -39.27 -0.40 -1.18 16 20 C -0.18 -1.86 10.11 -39.44 -0.40 -2.26 16 21 C 0.10 1.19 11.14 -17.55 -0.20 1.00 16 22 N -0.46 -6.92 7.85 -9.47 -0.07 -6.99 16 23 C -0.17 -2.75 5.41 -90.62 -0.49 -3.24 16 24 C -0.17 -2.50 9.29 -26.74 -0.25 -2.75 16 25 C -0.19 -2.49 10.13 -26.74 -0.27 -2.76 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.56 7.43 -51.93 -0.39 0.17 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.02 0.48 6.43 -51.93 -0.33 0.15 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 34 H 0.36 7.36 6.22 -39.29 -0.24 7.12 16 35 H 0.13 1.26 7.94 -52.48 -0.42 0.84 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.12 2.14 8.06 -51.93 -0.42 1.72 16 40 H 0.10 1.51 5.16 -51.93 -0.27 1.25 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -30.73 347.97 -10.15 -40.88 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.01 Total: 7.89 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -3.42 Total: -25.37 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.05 Total: -45.59 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.73 -10.15 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.312 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds