Wall clock time and date at job start Mon Mar 30 2020 01:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47181 * 2 1 4 4 C 1.52999 * 109.46639 * 240.00267 * 2 1 3 5 5 C 1.53006 * 109.46871 * 174.99899 * 4 2 1 6 6 C 1.50701 * 109.47120 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00161 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00024 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99831 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00108 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46906 * 59.99825 * 10 8 6 12 12 H 1.48494 * 109.47537 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47245 * 300.00445 * 10 8 6 14 14 N 1.46900 * 109.47064 * 120.00416 * 2 1 3 15 15 C 1.46896 * 110.99937 * 274.99802 * 14 2 1 16 16 H 1.08997 * 109.47523 * 35.00111 * 15 14 2 17 17 C 1.50706 * 109.47019 * 155.00278 * 15 14 2 18 18 C 1.38223 * 119.61677 * 239.42944 * 17 15 14 19 19 C 1.38625 * 119.16397 * 179.70155 * 18 17 15 20 20 C 1.38685 * 118.41583 * 0.51274 * 19 18 17 21 21 C 1.38183 * 119.16102 * 359.50869 * 20 19 18 22 22 N 1.31856 * 119.61907 * 59.40453 * 17 15 14 23 23 C 1.52996 * 109.47049 * 274.99800 * 15 14 2 24 24 C 1.53000 * 117.50312 * 242.39426 * 23 15 14 25 25 C 1.52991 * 60.00132 * 252.51189 * 24 23 15 26 26 H 1.08991 * 109.47699 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46758 * 300.00121 * 1 2 3 28 28 H 1.09000 * 109.47077 * 59.99187 * 1 2 3 29 29 H 1.08992 * 109.47792 * 294.99861 * 4 2 1 30 30 H 1.09001 * 109.47157 * 55.00871 * 4 2 1 31 31 H 1.09003 * 109.47554 * 300.00220 * 5 4 2 32 32 H 1.09003 * 109.46701 * 60.00062 * 5 4 2 33 33 H 0.96995 * 119.99948 * 179.97438 * 9 8 6 34 34 H 1.00899 * 110.99529 * 151.04446 * 14 2 1 35 35 H 1.08007 * 120.42085 * 359.95708 * 18 17 15 36 36 H 1.07993 * 120.79387 * 180.27221 * 19 18 17 37 37 H 1.07995 * 120.41516 * 179.77850 * 20 19 18 38 38 H 1.08002 * 119.61238 * 180.24973 * 21 20 19 39 39 H 1.09001 * 115.55433 * 28.10490 * 23 15 14 40 40 H 1.09001 * 117.49367 * 0.02562 * 24 23 15 41 41 H 1.09001 * 117.50111 * 145.01877 * 24 23 15 42 42 H 1.09002 * 117.49814 * 252.50518 * 25 24 23 43 43 H 1.09006 * 117.52242 * 107.48221 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0670 -1.3231 -2.5447 7 1 3.3685 -1.8028 -3.2142 8 6 5.4183 -1.3600 -2.8161 9 7 6.2689 -0.7754 -2.0010 10 14 6.0409 -2.2405 -4.3413 11 1 5.4491 -1.6140 -5.5507 12 1 7.5208 -2.1356 -4.4041 13 1 5.6476 -3.6711 -4.2823 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2224 2.3469 16 1 1.2577 0.9328 2.2908 17 6 1.9787 -0.5679 3.6258 18 6 0.9446 -0.3102 4.5061 19 6 0.8545 -1.0471 5.6768 20 6 1.8186 -2.0127 5.9246 21 6 2.8238 -2.2139 4.9981 22 7 2.8750 -1.4976 3.8920 23 6 3.4111 0.9806 2.3224 24 6 4.3667 0.7699 3.4986 25 6 3.6097 2.0916 3.3553 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.7516 -1.7714 -1.2058 30 1 1.6053 -0.2615 -2.1370 31 1 3.8532 0.4370 -1.3574 32 1 3.9994 -1.0728 -0.4261 33 1 7.2196 -0.8017 -2.1917 34 1 2.9173 -1.1206 1.0286 35 1 0.2135 0.4528 4.2826 36 1 0.0550 -0.8707 6.3810 37 1 1.7816 -2.6030 6.8283 38 1 3.5761 -2.9668 5.1818 39 1 3.8513 1.1262 1.3359 40 1 4.0488 0.0907 4.2897 41 1 5.4357 0.7765 3.2860 42 1 4.1807 2.9680 3.0486 43 1 2.7935 2.2828 4.0522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:29 Heat of formation + Delta-G solvation = 34.858672 kcal Electronic energy + Delta-G solvation = -21349.178424 eV Core-core repulsion = 18393.934903 eV Total energy + Delta-G solvation = -2955.243521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48516 -39.13728 -37.44167 -35.19035 -33.51445 -33.18393 -31.69900 -30.49455 -27.28642 -26.42100 -24.42967 -23.68317 -23.25484 -23.09482 -21.29964 -20.76609 -18.54968 -17.75402 -17.27068 -17.10109 -16.57096 -16.44361 -16.28444 -15.57043 -15.15696 -14.65626 -14.41128 -14.24591 -14.06479 -13.78639 -13.72108 -13.18674 -13.15194 -12.85897 -12.81273 -12.54796 -12.42602 -12.36899 -12.31022 -11.88476 -11.69471 -11.40634 -11.27336 -10.97885 -10.89470 -10.58964 -10.54114 -10.19423 -9.85206 -9.25319 -8.19598 -6.30622 0.27411 0.50100 1.38019 1.41320 1.49074 2.40381 2.79603 2.90097 3.13152 3.42460 3.46432 3.78726 3.82049 4.06029 4.11189 4.13567 4.15281 4.31195 4.34419 4.36157 4.46946 4.59652 4.64664 4.73387 4.77063 4.79285 4.91510 4.97975 5.00669 5.06395 5.09841 5.17553 5.22840 5.25769 5.34955 5.36486 5.46015 5.54168 5.71426 5.84599 5.90629 6.24773 6.27340 6.42518 6.85855 7.24736 7.38277 8.91415 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.004476 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.687817 B = 6253.954761 C = 6550.238972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.086 3.914 3 H 0.033 0.967 4 C -0.102 4.102 5 C 0.032 3.968 6 C -0.545 4.545 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.268 1.268 14 N -0.673 5.673 15 C 0.172 3.828 16 H 0.104 0.896 17 C 0.135 3.865 18 C -0.171 4.171 19 C -0.075 4.075 20 C -0.174 4.174 21 C 0.076 3.924 22 N -0.498 5.498 23 C -0.190 4.190 24 C -0.173 4.173 25 C -0.157 4.157 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.059 0.941 31 H -0.017 1.017 32 H -0.007 1.007 33 H 0.262 0.738 34 H 0.341 0.659 35 H 0.151 0.849 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.354 2.684 17.384 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.023 4.023 3 H 0.051 0.949 4 C -0.140 4.140 5 C -0.005 4.005 6 C -0.583 4.583 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.193 1.193 14 N -0.305 5.305 15 C 0.061 3.939 16 H 0.122 0.878 17 C -0.002 4.002 18 C -0.191 4.191 19 C -0.101 4.101 20 C -0.193 4.193 21 C -0.081 4.081 22 N -0.208 5.208 23 C -0.211 4.211 24 C -0.210 4.210 25 C -0.194 4.194 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.001 0.999 32 H 0.011 0.989 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.183 0.817 37 H 0.180 0.820 38 H 0.180 0.820 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.138 2.307 16.945 20.971 hybrid contribution 1.277 0.176 -0.700 1.467 sum -10.861 2.482 16.245 19.698 Atomic orbital electron populations 1.21719 0.92886 1.02029 1.01803 1.21573 0.96470 0.95198 0.89074 0.94938 1.21644 0.96186 0.99658 0.96489 1.18943 0.92103 0.94276 0.95153 1.21668 0.92581 1.34739 1.09272 0.92407 1.25953 0.97319 0.96309 1.00038 1.70099 1.02656 1.45332 1.38982 0.85539 0.77008 0.79239 0.79501 1.19100 1.20838 1.19311 1.60734 1.34099 1.31517 1.04157 1.20057 0.94986 0.91005 0.87858 0.87814 1.21026 0.91039 0.93150 0.95020 1.22172 0.99104 1.02319 0.95552 1.21936 0.98429 0.93401 0.96288 1.22440 0.95525 0.99800 1.01562 1.23144 0.98280 0.97253 0.89462 1.67479 1.27005 1.05774 1.20540 1.22981 0.99242 1.04136 0.94713 1.23087 0.96992 1.00272 1.00653 1.22989 1.03219 0.92031 1.01197 0.92711 0.91771 0.91680 0.93082 0.92224 0.99854 0.98858 0.92932 0.83838 0.83106 0.81665 0.82044 0.82000 0.90616 0.87851 0.90717 0.88477 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.40 71.98 0.68 -2.83 16 2 C 0.09 3.06 2.46 44.92 0.11 3.17 16 3 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 4 C -0.10 -4.38 4.74 30.60 0.15 -4.24 16 5 C 0.03 1.76 4.80 29.85 0.14 1.91 16 6 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 7 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 8 C 0.00 0.10 5.46 84.66 0.46 0.56 16 9 N -0.93 -58.26 13.29 21.45 0.28 -57.97 16 10 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 14 N -0.67 -24.38 6.03 -473.32 -2.86 -27.24 16 15 C 0.17 5.23 2.46 44.17 0.11 5.33 16 16 H 0.10 2.73 6.83 -2.39 -0.02 2.71 16 17 C 0.13 3.77 4.52 42.55 0.19 3.96 16 18 C -0.17 -3.55 9.71 22.36 0.22 -3.33 16 19 C -0.07 -1.22 10.18 22.47 0.23 -0.99 16 20 C -0.17 -2.99 10.11 22.36 0.23 -2.76 16 21 C 0.08 1.79 11.14 84.67 0.94 2.74 16 22 N -0.50 -15.30 7.85 -183.88 -1.44 -16.74 16 23 C -0.19 -6.33 5.41 -10.80 -0.06 -6.39 16 24 C -0.17 -5.46 9.29 30.59 0.28 -5.17 16 25 C -0.16 -4.12 10.13 30.59 0.31 -3.81 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.51 7.43 -2.38 -0.02 1.49 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 32 H -0.01 -0.40 6.43 -2.39 -0.02 -0.41 16 33 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 34 H 0.34 14.91 6.22 -89.69 -0.56 14.36 16 35 H 0.15 2.37 7.94 -2.91 -0.02 2.34 16 36 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 39 H 0.08 3.10 8.06 -2.39 -0.02 3.08 16 40 H 0.10 3.22 5.16 -2.39 -0.01 3.21 16 41 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -69.68 347.97 2.66 -67.02 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.42 Total: 30.96 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 4.22 Total: -43.70 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.01 Total: -101.95 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -69.68 2.66 -67.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.879 kcal (2) G-P(sol) polarization free energy of solvation -69.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds