Wall clock time and date at job start Mon Mar 30 2020 01:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47150 * 2 1 4 4 C 1.53001 * 109.47447 * 240.00096 * 2 1 3 5 5 C 1.53000 * 109.47478 * 174.99942 * 4 2 1 6 6 C 1.50693 * 109.47199 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00304 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99821 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00399 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99997 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47017 * 270.00433 * 10 8 6 12 12 H 1.48497 * 109.46967 * 29.99850 * 10 8 6 13 13 H 1.48495 * 109.47436 * 149.99838 * 10 8 6 14 14 N 1.46905 * 109.47238 * 120.00044 * 2 1 3 15 15 C 1.46898 * 110.99961 * 278.37878 * 14 2 1 16 16 H 1.09009 * 109.30533 * 342.44925 * 15 14 2 17 17 C 1.52821 * 109.30971 * 102.04755 * 15 14 2 18 18 C 1.53315 * 108.45912 * 171.11017 * 17 15 14 19 19 C 1.52806 * 108.50254 * 290.14047 * 18 17 15 20 20 C 1.50472 * 110.46464 * 51.04991 * 19 18 17 21 21 C 1.38760 * 118.53804 * 162.52169 * 20 19 18 22 22 N 1.31667 * 121.01464 * 179.83554 * 21 20 19 23 23 C 1.31889 * 121.65202 * 359.95299 * 22 21 20 24 24 C 1.38062 * 120.58212 * 0.07414 * 23 22 21 25 25 C 1.37563 * 122.45392 * 342.28364 * 20 19 18 26 26 H 1.08995 * 109.46698 * 305.76308 * 1 2 3 27 27 H 1.08993 * 109.46753 * 65.76619 * 1 2 3 28 28 H 1.08999 * 109.46697 * 185.76347 * 1 2 3 29 29 H 1.08994 * 109.47048 * 55.00140 * 4 2 1 30 30 H 1.09004 * 109.46693 * 295.00195 * 4 2 1 31 31 H 1.09007 * 109.46994 * 59.99773 * 5 4 2 32 32 H 1.08998 * 109.47107 * 300.00512 * 5 4 2 33 33 H 0.97007 * 119.99669 * 359.97438 * 9 8 6 34 34 H 1.00894 * 110.99846 * 42.33060 * 14 2 1 35 35 H 1.09000 * 109.64363 * 290.80115 * 17 15 14 36 36 H 1.09004 * 109.63779 * 51.41729 * 17 15 14 37 37 H 1.08999 * 109.63265 * 49.84772 * 18 17 15 38 38 H 1.09006 * 109.63202 * 170.44197 * 18 17 15 39 39 H 1.08995 * 109.30735 * 171.35872 * 19 18 17 40 40 H 1.08995 * 109.30519 * 290.95175 * 19 18 17 41 41 H 1.08000 * 119.49113 * 359.81115 * 21 20 19 42 42 H 1.07995 * 119.71178 * 180.09826 * 23 22 21 43 43 H 1.08000 * 120.33442 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0673 -1.3241 -2.5438 7 1 3.3689 -1.8046 -3.2130 8 6 5.4185 -1.3603 -2.8155 9 7 6.2690 -0.7749 -2.0010 10 14 6.0413 -2.2410 -4.3407 11 1 6.3217 -3.6617 -4.0121 12 1 5.0098 -2.1739 -5.4068 13 1 7.2872 -1.5874 -4.8156 14 7 2.0197 -0.6925 1.1995 15 6 2.0068 0.2010 2.3654 16 1 1.9394 1.2349 2.0264 17 6 0.7953 -0.1245 3.2381 18 6 0.9191 0.6568 4.5514 19 6 2.0678 0.0606 5.3639 20 6 3.3104 -0.0418 4.5214 21 6 4.5319 -0.2056 5.1589 22 7 5.6493 -0.3038 4.4694 23 6 5.6561 -0.2521 3.1515 24 6 4.4787 -0.0901 2.4488 25 6 3.2775 0.0162 3.1474 26 1 -0.3632 0.6006 0.8339 27 1 -0.3632 0.4218 -0.9371 28 1 -0.3633 -1.0225 0.1032 29 1 1.6055 -0.2617 -2.1369 30 1 1.7517 -1.7715 -1.2056 31 1 3.9996 -1.0728 -0.4259 32 1 3.8533 0.4370 -1.3572 33 1 5.9456 -0.3173 -1.2091 34 1 1.4837 -1.5284 1.3785 35 1 -0.1182 0.1700 2.7214 36 1 0.7721 -1.1938 3.4486 37 1 1.1282 1.7046 4.3359 38 1 -0.0099 0.5742 5.1157 39 1 2.2681 0.6971 6.2256 40 1 1.7868 -0.9345 5.7086 41 1 4.5667 -0.2528 6.2373 42 1 6.5907 -0.3376 2.6173 43 1 4.4889 -0.0488 1.3696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:43 Heat of formation + Delta-G solvation = 3.814841 kcal Electronic energy + Delta-G solvation = -21567.241594 eV Core-core repulsion = 18610.651911 eV Total energy + Delta-G solvation = -2956.589683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57809 -37.98784 -36.02927 -33.61346 -32.49051 -31.16420 -30.25952 -28.88071 -27.45681 -24.60579 -23.84261 -23.16861 -22.16607 -21.45248 -20.35574 -19.46983 -16.75222 -16.57818 -16.18981 -15.68603 -14.92412 -14.90046 -14.44726 -13.72339 -13.69871 -13.63027 -13.36863 -13.27714 -12.82787 -12.57944 -12.49012 -12.38465 -12.08437 -12.04128 -11.58028 -11.22788 -11.14854 -11.00607 -10.85315 -10.69859 -10.22897 -10.05711 -9.80911 -9.58914 -9.18220 -9.14397 -8.64795 -8.42096 -8.21839 -8.07014 -6.24947 -3.92334 1.38073 1.54111 3.48644 3.52045 3.67536 4.01209 4.27658 4.55854 4.58684 4.62229 4.70791 4.80323 4.93063 5.11836 5.19316 5.25919 5.29540 5.40971 5.42467 5.49770 5.52390 5.55983 5.63288 5.75715 5.78529 5.81900 5.95305 6.01189 6.06155 6.16300 6.18283 6.25300 6.37983 6.49558 6.67177 6.73461 7.03974 7.11097 7.32722 7.59717 7.63369 7.81915 8.24303 8.36482 8.59833 9.01851 9.78869 11.15980 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.005286 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.178685 B = 5295.719942 C = 6687.533498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 H 0.072 0.928 4 C -0.092 4.092 5 C 0.016 3.984 6 C -0.601 4.601 7 H 0.044 0.956 8 C 0.015 3.985 9 N -0.915 5.915 10 Si 1.067 2.933 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.285 1.285 14 N -0.666 5.666 15 C 0.126 3.874 16 H 0.084 0.916 17 C -0.143 4.143 18 C -0.116 4.116 19 C -0.073 4.073 20 C -0.136 4.136 21 C 0.085 3.915 22 N -0.488 5.488 23 C 0.083 3.917 24 C -0.128 4.128 25 C -0.028 4.028 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.024 0.976 32 H -0.003 1.003 33 H 0.269 0.731 34 H 0.341 0.659 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 3.108 14.003 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.026 4.026 3 H 0.090 0.910 4 C -0.130 4.130 5 C -0.020 4.020 6 C -0.639 4.639 7 H 0.062 0.938 8 C -0.189 4.189 9 N -0.552 5.552 10 Si 0.897 3.103 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.211 1.211 14 N -0.296 5.296 15 C 0.016 3.984 16 H 0.102 0.898 17 C -0.182 4.182 18 C -0.154 4.154 19 C -0.111 4.111 20 C -0.138 4.138 21 C -0.074 4.074 22 N -0.196 5.196 23 C -0.071 4.071 24 C -0.148 4.148 25 C -0.037 4.037 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.016 0.984 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.164 0.836 42 H 0.173 0.827 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.126 2.720 13.396 16.436 hybrid contribution -3.144 0.442 0.496 3.214 sum -12.270 3.162 13.892 18.803 Atomic orbital electron populations 1.22630 0.98384 1.01443 1.01626 1.21886 0.91256 0.98139 0.91359 0.90972 1.21511 0.99794 0.98602 0.93141 1.19141 0.89995 0.95653 0.97254 1.22149 0.94527 1.37692 1.09565 0.93809 1.25738 0.93533 0.96932 1.02679 1.70746 1.37223 1.33443 1.13803 0.83570 0.75568 0.76088 0.75120 1.21602 1.21704 1.21115 1.60501 1.59844 1.07347 1.01863 1.20342 0.90500 0.97466 0.90118 0.89809 1.22325 0.98339 1.01009 0.96551 1.21515 0.98063 0.99826 0.95992 1.20350 0.92025 1.01489 0.97222 1.20395 0.96492 1.02978 0.93951 1.22622 0.87498 0.97548 0.99744 1.67573 1.30444 1.12385 1.09215 1.22811 0.98708 0.96049 0.89580 1.22491 0.92021 0.97317 1.02947 1.19857 0.95657 0.96042 0.92115 0.93407 0.92206 0.92775 0.93273 0.93298 0.95745 0.98449 0.92067 0.83939 0.91232 0.91212 0.91609 0.91429 0.90751 0.90713 0.83608 0.82724 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.91 37.16 0.33 -1.92 16 2 C 0.08 1.29 2.51 -67.71 -0.17 1.12 16 3 H 0.07 1.18 7.45 -51.93 -0.39 0.79 16 4 C -0.09 -1.85 4.83 -26.73 -0.13 -1.98 16 5 C 0.02 0.41 4.17 -27.89 -0.12 0.30 16 6 C -0.60 -17.25 9.11 -34.44 -0.31 -17.57 16 7 H 0.04 1.25 7.74 -52.49 -0.41 0.84 16 8 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 9 N -0.92 -28.12 13.65 55.43 0.76 -27.37 16 10 Si 1.07 25.83 29.90 -169.99 -5.08 20.75 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 14 N -0.67 -9.88 4.75 -101.23 -0.48 -10.36 16 15 C 0.13 1.63 2.42 -69.13 -0.17 1.46 16 16 H 0.08 1.11 7.23 -51.92 -0.38 0.74 16 17 C -0.14 -1.44 5.06 -26.66 -0.13 -1.57 16 18 C -0.12 -1.01 5.97 -26.67 -0.16 -1.17 16 19 C -0.07 -0.68 5.71 -28.09 -0.16 -0.84 16 20 C -0.14 -1.75 5.73 -104.79 -0.60 -2.35 16 21 C 0.09 1.17 10.80 -17.43 -0.19 0.98 16 22 N -0.49 -7.96 10.36 -13.19 -0.14 -8.10 16 23 C 0.08 1.40 11.19 -17.59 -0.20 1.20 16 24 C -0.13 -2.18 9.33 -39.23 -0.37 -2.54 16 25 C -0.03 -0.41 5.54 -104.62 -0.58 -0.99 16 26 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.02 0.64 6.58 -51.92 -0.34 0.30 16 32 H 0.00 -0.07 8.01 -51.93 -0.42 -0.49 16 33 H 0.27 8.17 7.22 -40.82 -0.29 7.87 16 34 H 0.34 4.75 7.83 -39.29 -0.31 4.44 16 35 H 0.07 0.64 6.41 -51.93 -0.33 0.31 16 36 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 43 H 0.15 2.90 6.68 -52.49 -0.35 2.55 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -31.46 337.31 -9.88 -41.34 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.97 Total: 4.19 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -3.05 Total: -25.54 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.14 Total: -45.83 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.46 -9.88 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.160 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds