Wall clock time and date at job start Mon Mar 30 2020 01:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47150 * 2 1 4 4 C 1.53001 * 109.47447 * 240.00096 * 2 1 3 5 5 C 1.53000 * 109.47478 * 174.99942 * 4 2 1 6 6 C 1.50693 * 109.47199 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00304 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99821 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00399 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99997 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47017 * 270.00433 * 10 8 6 12 12 H 1.48497 * 109.46967 * 29.99850 * 10 8 6 13 13 H 1.48495 * 109.47436 * 149.99838 * 10 8 6 14 14 N 1.46905 * 109.47238 * 120.00044 * 2 1 3 15 15 C 1.46898 * 110.99961 * 278.37878 * 14 2 1 16 16 H 1.09009 * 109.30533 * 342.44925 * 15 14 2 17 17 C 1.52821 * 109.30971 * 102.04755 * 15 14 2 18 18 C 1.53315 * 108.45912 * 171.11017 * 17 15 14 19 19 C 1.52806 * 108.50254 * 290.14047 * 18 17 15 20 20 C 1.50472 * 110.46464 * 51.04991 * 19 18 17 21 21 C 1.38760 * 118.53804 * 162.52169 * 20 19 18 22 22 N 1.31667 * 121.01464 * 179.83554 * 21 20 19 23 23 C 1.31889 * 121.65202 * 359.95299 * 22 21 20 24 24 C 1.38062 * 120.58212 * 0.07414 * 23 22 21 25 25 C 1.37563 * 122.45392 * 342.28364 * 20 19 18 26 26 H 1.08995 * 109.46698 * 305.76308 * 1 2 3 27 27 H 1.08993 * 109.46753 * 65.76619 * 1 2 3 28 28 H 1.08999 * 109.46697 * 185.76347 * 1 2 3 29 29 H 1.08994 * 109.47048 * 55.00140 * 4 2 1 30 30 H 1.09004 * 109.46693 * 295.00195 * 4 2 1 31 31 H 1.09007 * 109.46994 * 59.99773 * 5 4 2 32 32 H 1.08998 * 109.47107 * 300.00512 * 5 4 2 33 33 H 0.97007 * 119.99669 * 359.97438 * 9 8 6 34 34 H 1.00894 * 110.99846 * 42.33060 * 14 2 1 35 35 H 1.09000 * 109.64363 * 290.80115 * 17 15 14 36 36 H 1.09004 * 109.63779 * 51.41729 * 17 15 14 37 37 H 1.08999 * 109.63265 * 49.84772 * 18 17 15 38 38 H 1.09006 * 109.63202 * 170.44197 * 18 17 15 39 39 H 1.08995 * 109.30735 * 171.35872 * 19 18 17 40 40 H 1.08995 * 109.30519 * 290.95175 * 19 18 17 41 41 H 1.08000 * 119.49113 * 359.81115 * 21 20 19 42 42 H 1.07995 * 119.71178 * 180.09826 * 23 22 21 43 43 H 1.08000 * 120.33442 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0673 -1.3241 -2.5438 7 1 3.3689 -1.8046 -3.2130 8 6 5.4185 -1.3603 -2.8155 9 7 6.2690 -0.7749 -2.0010 10 14 6.0413 -2.2410 -4.3407 11 1 6.3217 -3.6617 -4.0121 12 1 5.0098 -2.1739 -5.4068 13 1 7.2872 -1.5874 -4.8156 14 7 2.0197 -0.6925 1.1995 15 6 2.0068 0.2010 2.3654 16 1 1.9394 1.2349 2.0264 17 6 0.7953 -0.1245 3.2381 18 6 0.9191 0.6568 4.5514 19 6 2.0678 0.0606 5.3639 20 6 3.3104 -0.0418 4.5214 21 6 4.5319 -0.2056 5.1589 22 7 5.6493 -0.3038 4.4694 23 6 5.6561 -0.2521 3.1515 24 6 4.4787 -0.0901 2.4488 25 6 3.2775 0.0162 3.1474 26 1 -0.3632 0.6006 0.8339 27 1 -0.3632 0.4218 -0.9371 28 1 -0.3633 -1.0225 0.1032 29 1 1.6055 -0.2617 -2.1369 30 1 1.7517 -1.7715 -1.2056 31 1 3.9996 -1.0728 -0.4259 32 1 3.8533 0.4370 -1.3572 33 1 5.9456 -0.3173 -1.2091 34 1 1.4837 -1.5284 1.3785 35 1 -0.1182 0.1700 2.7214 36 1 0.7721 -1.1938 3.4486 37 1 1.1282 1.7046 4.3359 38 1 -0.0099 0.5742 5.1157 39 1 2.2681 0.6971 6.2256 40 1 1.7868 -0.9345 5.7086 41 1 4.5667 -0.2528 6.2373 42 1 6.5907 -0.3376 2.6173 43 1 4.4889 -0.0488 1.3696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:42 Heat of formation + Delta-G solvation = -14.922441 kcal Electronic energy + Delta-G solvation = -21568.054103 eV Core-core repulsion = 18610.651911 eV Total energy + Delta-G solvation = -2957.402192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68263 -39.17748 -37.21064 -35.50973 -33.82651 -32.40803 -31.55944 -30.34513 -28.45665 -26.54464 -24.92025 -24.20097 -23.68493 -22.84605 -21.72962 -20.48815 -18.78894 -17.88952 -17.31251 -16.83520 -16.10464 -16.05069 -15.64166 -15.55024 -15.02422 -14.77678 -14.66057 -14.49741 -14.23702 -13.95895 -13.78591 -13.48058 -13.42896 -13.03190 -12.85100 -12.72146 -12.54645 -12.15960 -12.07077 -11.94877 -11.84592 -11.62335 -11.46765 -11.33307 -10.58390 -10.47254 -10.37096 -10.30220 -9.77469 -9.23802 -8.61867 -6.30985 0.20356 0.34573 1.50722 1.60422 1.77545 2.58518 2.81539 3.17745 3.22281 3.56618 3.63960 3.75281 3.88731 3.99711 4.00779 4.17575 4.19259 4.24981 4.31826 4.44117 4.50385 4.59564 4.66752 4.77561 4.79293 4.85879 4.90239 4.94861 4.99030 5.00842 5.09478 5.16825 5.21332 5.31682 5.32413 5.38720 5.48229 5.55319 5.70671 5.85452 6.10502 6.18859 6.29867 6.53419 6.68215 7.03554 7.50372 8.78660 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.005286 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.178685 B = 5295.719942 C = 6687.533498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 H 0.059 0.941 4 C -0.084 4.084 5 C 0.025 3.975 6 C -0.620 4.620 7 H 0.044 0.956 8 C -0.040 4.040 9 N -0.939 5.939 10 Si 1.116 2.884 11 H -0.275 1.275 12 H -0.270 1.270 13 H -0.283 1.283 14 N -0.686 5.686 15 C 0.129 3.871 16 H 0.078 0.922 17 C -0.135 4.135 18 C -0.113 4.113 19 C -0.072 4.072 20 C -0.125 4.125 21 C 0.083 3.917 22 N -0.507 5.507 23 C 0.062 3.938 24 C -0.150 4.150 25 C -0.035 4.035 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.005 0.995 32 H -0.029 1.029 33 H 0.256 0.744 34 H 0.347 0.653 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.183 0.817 42 H 0.144 0.856 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.768 2.746 15.644 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.015 4.015 3 H 0.077 0.923 4 C -0.122 4.122 5 C -0.012 4.012 6 C -0.658 4.658 7 H 0.062 0.938 8 C -0.237 4.237 9 N -0.577 5.577 10 Si 0.938 3.062 11 H -0.200 1.200 12 H -0.195 1.195 13 H -0.209 1.209 14 N -0.317 5.317 15 C 0.020 3.980 16 H 0.096 0.904 17 C -0.174 4.174 18 C -0.151 4.151 19 C -0.109 4.109 20 C -0.127 4.127 21 C -0.076 4.076 22 N -0.216 5.216 23 C -0.092 4.092 24 C -0.170 4.170 25 C -0.043 4.043 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.024 0.976 32 H -0.011 1.011 33 H 0.065 0.935 34 H 0.167 0.833 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.200 0.800 42 H 0.162 0.838 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.942 2.363 15.044 19.353 hybrid contribution -2.264 0.572 0.053 2.335 sum -14.205 2.935 15.097 20.936 Atomic orbital electron populations 1.22482 0.94959 1.02619 1.02771 1.21593 0.93741 0.96502 0.89662 0.92298 1.21367 0.95869 0.99160 0.95793 1.18996 0.93794 0.93214 0.95233 1.22626 0.94920 1.37634 1.10589 0.93812 1.27320 0.94346 0.96989 1.05048 1.70874 1.37702 1.34908 1.14176 0.82955 0.75612 0.75577 0.72064 1.20033 1.19476 1.20892 1.60306 1.60674 1.08165 1.02517 1.20353 0.91259 0.96650 0.89764 0.90419 1.22261 0.96848 1.01445 0.96811 1.21539 0.99044 0.99245 0.95235 1.20492 0.90114 1.03073 0.97209 1.20829 0.98093 1.00488 0.93328 1.23309 0.87059 0.95932 1.01322 1.67579 1.32141 1.13304 1.08557 1.22681 0.98423 0.97716 0.90339 1.22255 0.93709 0.99762 1.01295 1.20135 0.95268 0.95653 0.93292 0.91033 0.92039 0.91791 0.93410 0.93504 0.97636 1.01088 0.93499 0.83277 0.89766 0.90974 0.91858 0.88592 0.88310 0.89058 0.79993 0.83825 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 8.91 71.98 0.64 -3.15 16 2 C 0.09 2.94 2.51 44.91 0.11 3.06 16 3 H 0.06 1.98 7.45 -2.39 -0.02 1.96 16 4 C -0.08 -3.43 4.83 30.59 0.15 -3.28 16 5 C 0.02 1.31 4.17 29.85 0.12 1.44 16 6 C -0.62 -36.73 9.11 25.60 0.23 -36.49 16 7 H 0.04 2.53 7.74 -2.91 -0.02 2.51 16 8 C -0.04 -2.39 5.46 84.65 0.46 -1.93 16 9 N -0.94 -60.26 13.65 21.45 0.29 -59.97 16 10 Si 1.12 52.40 29.90 68.60 2.05 54.46 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 N -0.69 -20.51 4.75 -474.18 -2.25 -22.76 16 15 C 0.13 3.25 2.42 44.00 0.11 3.35 16 16 H 0.08 2.04 7.23 -2.38 -0.02 2.02 16 17 C -0.14 -2.26 5.06 30.64 0.16 -2.10 16 18 C -0.11 -1.47 5.97 30.64 0.18 -1.29 16 19 C -0.07 -1.03 5.71 29.71 0.17 -0.86 16 20 C -0.13 -2.98 5.73 -19.97 -0.11 -3.09 16 21 C 0.08 2.15 10.80 84.84 0.92 3.07 16 22 N -0.51 -16.88 10.36 -195.64 -2.03 -18.90 16 23 C 0.06 2.26 11.19 84.64 0.95 3.21 16 24 C -0.15 -5.54 9.33 22.50 0.21 -5.33 16 25 C -0.03 -1.02 5.54 -19.86 -0.11 -1.13 16 26 H 0.07 1.29 6.43 -2.39 -0.02 1.28 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.33 8.04 -2.39 -0.02 1.31 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.01 0.30 6.58 -2.38 -0.02 0.29 16 32 H -0.03 -1.69 8.01 -2.39 -0.02 -1.71 16 33 H 0.26 16.64 7.22 -92.70 -0.67 15.97 16 34 H 0.35 9.39 7.83 -89.70 -0.70 8.69 16 35 H 0.08 1.20 6.41 -2.39 -0.02 1.18 16 36 H 0.07 1.21 7.90 -2.38 -0.02 1.19 16 37 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 38 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.10 1.03 8.13 -2.39 -0.02 1.01 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.14 5.28 8.06 -2.91 -0.02 5.26 16 43 H 0.11 4.98 6.68 -2.91 -0.02 4.96 16 Total: -1.00 -72.14 337.31 2.64 -69.50 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.38 Total: 22.22 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 4.18 Total: -44.54 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -3.99 Total: -101.63 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.05 Total: 54.46 kcal Total: -72.14 2.64 -69.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.580 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds