Wall clock time and date at job start Mon Mar 30 2020 01:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46895 * 2 1 4 4 C 1.52998 * 109.47024 * 240.00337 * 2 1 3 5 5 C 1.53007 * 109.46981 * 175.00035 * 4 2 1 6 6 C 1.50696 * 109.47213 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00120 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00203 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99734 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00264 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46956 * 89.99488 * 10 8 6 12 12 H 1.48495 * 109.47251 * 209.99784 * 10 8 6 13 13 H 1.48501 * 109.47182 * 329.99760 * 10 8 6 14 14 N 1.46896 * 109.47043 * 120.00004 * 2 1 3 15 15 C 1.46903 * 111.00062 * 269.02486 * 14 2 1 16 16 H 1.09001 * 109.30176 * 331.02085 * 15 14 2 17 17 C 1.52797 * 109.30458 * 90.61785 * 15 14 2 18 18 C 1.53319 * 108.49313 * 171.40736 * 17 15 14 19 19 C 1.52818 * 108.47577 * 290.15107 * 18 17 15 20 20 C 1.50340 * 110.46255 * 50.74859 * 19 18 17 21 21 C 1.39083 * 118.69755 * 162.75298 * 20 19 18 22 22 C 1.38053 * 119.33727 * 179.77675 * 21 20 19 23 23 N 1.31897 * 120.58418 * 359.97255 * 22 21 20 24 24 C 1.31668 * 121.64516 * 0.12353 * 23 22 21 25 25 C 1.37837 * 122.82263 * 342.69022 * 20 19 18 26 26 H 1.09003 * 109.47022 * 66.14365 * 1 2 3 27 27 H 1.09001 * 109.46789 * 186.13614 * 1 2 3 28 28 H 1.08993 * 109.46968 * 306.13558 * 1 2 3 29 29 H 1.08998 * 109.46972 * 294.99441 * 4 2 1 30 30 H 1.08992 * 109.47538 * 54.99602 * 4 2 1 31 31 H 1.09000 * 109.46372 * 299.99859 * 5 4 2 32 32 H 1.09002 * 109.47329 * 59.99519 * 5 4 2 33 33 H 0.96995 * 119.99793 * 180.02562 * 9 8 6 34 34 H 1.00901 * 110.99738 * 145.07104 * 14 2 1 35 35 H 1.08996 * 109.63895 * 291.10832 * 17 15 14 36 36 H 1.09003 * 109.63593 * 51.71237 * 17 15 14 37 37 H 1.09004 * 109.63517 * 49.84334 * 18 17 15 38 38 H 1.09003 * 109.64001 * 170.45196 * 18 17 15 39 39 H 1.09000 * 109.31114 * 171.05442 * 19 18 17 40 40 H 1.09003 * 109.30207 * 290.44919 * 19 18 17 41 41 H 1.08010 * 120.33014 * 359.74695 * 21 20 19 42 42 H 1.07995 * 119.70728 * 179.97438 * 22 21 20 43 43 H 1.07994 * 119.49572 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0672 -1.3230 -2.5445 7 1 3.3688 -1.8034 -3.2137 8 6 5.4185 -1.3599 -2.8158 9 7 6.2691 -0.7753 -2.0007 10 14 6.0412 -2.2403 -4.3411 11 1 6.0915 -1.2859 -5.4776 12 1 7.4023 -2.7750 -4.0830 13 1 5.1247 -3.3600 -4.6752 14 7 2.0197 -0.6925 1.1994 15 6 2.2172 0.2508 2.3082 16 1 2.4606 1.2341 1.9057 17 6 0.9305 0.3444 3.1270 18 6 1.2184 1.1586 4.3938 19 6 2.1197 0.3295 5.3079 20 6 3.3097 -0.1849 4.5467 21 6 4.4128 -0.6413 5.2604 22 6 5.5109 -1.1208 4.5748 23 7 5.5191 -1.1487 3.2561 24 6 4.4927 -0.7229 2.5498 25 6 3.3552 -0.2254 3.1696 26 1 -0.3633 0.4156 -0.9399 27 1 -0.3633 -1.0218 0.1099 28 1 -0.3633 0.6060 0.8299 29 1 1.7517 -1.7714 -1.2056 30 1 1.6054 -0.2617 -2.1369 31 1 3.8531 0.4371 -1.3573 32 1 3.9996 -1.0727 -0.4260 33 1 7.2197 -0.8010 -2.1918 34 1 2.8684 -1.2013 1.0020 35 1 0.1581 0.8413 2.5400 36 1 0.5981 -0.6565 3.4026 37 1 1.7231 2.0868 4.1258 38 1 0.2827 1.3817 4.9064 39 1 2.4624 0.9503 6.1357 40 1 1.5535 -0.5135 5.7040 41 1 4.4105 -0.6202 6.3403 42 1 6.3708 -1.4762 5.1230 43 1 4.5368 -0.7612 1.4714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:57 Heat of formation + Delta-G solvation = 10.518333 kcal Electronic energy + Delta-G solvation = -21544.746812 eV Core-core repulsion = 18588.447814 eV Total energy + Delta-G solvation = -2956.298997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.66777 -37.74084 -36.08704 -33.45999 -32.41097 -31.23339 -30.18171 -28.98306 -27.74877 -25.01244 -23.88794 -23.16995 -22.09872 -21.19420 -19.83380 -19.38020 -16.88371 -16.46068 -16.10578 -15.68403 -15.16988 -14.58490 -14.48311 -14.27705 -14.05940 -13.61173 -13.46532 -12.93512 -12.63135 -12.43157 -12.38013 -12.24896 -11.87577 -11.59949 -11.50507 -11.18653 -11.06042 -10.95198 -10.88195 -10.67838 -10.46364 -10.00080 -9.80031 -9.34039 -9.26484 -9.10423 -9.03641 -8.88098 -8.34245 -7.99334 -5.98648 -4.01196 1.26641 1.40909 3.33743 3.40478 3.43653 3.95135 4.44925 4.47750 4.51223 4.59563 4.75608 4.94375 5.03623 5.06530 5.21394 5.34785 5.37532 5.40498 5.52271 5.54572 5.70470 5.71417 5.73856 5.82711 5.86581 5.92920 5.99771 6.06236 6.18598 6.23001 6.31141 6.41940 6.49297 6.54413 6.55382 6.88014 6.89854 7.06288 7.47131 7.60286 7.77230 7.82807 7.98993 8.23977 8.42454 9.04499 9.63290 11.12244 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.005318 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.998099 B = 5263.689641 C = 6654.471135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.042 0.958 4 C -0.119 4.119 5 C 0.021 3.979 6 C -0.522 4.522 7 H 0.055 0.945 8 C 0.059 3.941 9 N -0.891 5.891 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.682 5.682 15 C 0.132 3.868 16 H 0.059 0.941 17 C -0.107 4.107 18 C -0.121 4.121 19 C -0.080 4.080 20 C -0.032 4.032 21 C -0.183 4.183 22 C 0.089 3.911 23 N -0.476 5.476 24 C 0.112 3.888 25 C -0.131 4.131 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.354 0.646 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 3.635 15.586 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.060 0.940 4 C -0.157 4.157 5 C -0.016 4.016 6 C -0.560 4.560 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.530 5.530 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.318 5.318 15 C 0.022 3.978 16 H 0.077 0.923 17 C -0.145 4.145 18 C -0.159 4.159 19 C -0.117 4.117 20 C -0.040 4.040 21 C -0.203 4.203 22 C -0.066 4.066 23 N -0.184 5.184 24 C -0.047 4.047 25 C -0.133 4.133 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.178 0.822 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.148 0.852 42 H 0.169 0.831 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.055 3.129 15.375 18.115 hybrid contribution 0.702 0.274 -0.663 1.003 sum -8.353 3.403 14.712 17.257 Atomic orbital electron populations 1.21898 0.95667 1.01768 1.00251 1.21748 0.94754 0.96164 0.90218 0.93967 1.21909 0.99729 0.99545 0.94534 1.19155 0.88693 0.96901 0.96888 1.21187 0.91950 1.34562 1.08302 0.92689 1.25011 0.97081 0.95560 0.96631 1.69944 1.02437 1.43861 1.36789 0.86618 0.78202 0.79971 0.83364 1.20753 1.21217 1.19887 1.60798 1.38263 1.26624 1.06115 1.20335 0.91731 0.94701 0.91053 0.92316 1.21680 0.96876 1.00847 0.95093 1.21603 0.99287 0.98683 0.96355 1.20461 0.93876 0.99849 0.97549 1.19807 0.95477 0.95850 0.92885 1.22061 0.94819 1.02524 1.00854 1.22743 0.97407 0.95928 0.90535 1.67734 1.28179 1.14705 1.07829 1.23162 0.87878 0.92401 1.01228 1.20699 0.97363 1.01286 0.93982 0.93076 0.92331 0.93485 0.92437 0.92527 0.96888 0.96932 0.92943 0.82193 0.91131 0.90872 0.91721 0.91224 0.90643 0.90163 0.85235 0.83124 0.81841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.24 37.16 0.34 -1.60 16 2 C 0.08 1.36 2.66 -67.71 -0.18 1.18 16 3 H 0.04 0.74 7.25 -51.93 -0.38 0.36 16 4 C -0.12 -2.41 4.70 -26.73 -0.13 -2.54 16 5 C 0.02 0.52 4.82 -27.88 -0.13 0.38 16 6 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 7 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 10 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 14 N -0.68 -11.28 6.17 -101.18 -0.62 -11.91 16 15 C 0.13 1.93 2.56 -69.08 -0.18 1.75 16 16 H 0.06 0.90 7.24 -51.93 -0.38 0.53 16 17 C -0.11 -1.26 5.23 -26.67 -0.14 -1.40 16 18 C -0.12 -1.17 5.98 -26.66 -0.16 -1.33 16 19 C -0.08 -0.78 5.72 -28.15 -0.16 -0.94 16 20 C -0.03 -0.41 5.74 -104.63 -0.60 -1.01 16 21 C -0.18 -2.22 9.74 -39.34 -0.38 -2.60 16 22 C 0.09 1.26 11.19 -17.59 -0.20 1.07 16 23 N -0.48 -8.61 10.36 -13.19 -0.14 -8.75 16 24 C 0.11 2.03 9.97 -17.43 -0.17 1.85 16 25 C -0.13 -2.01 5.54 -104.69 -0.58 -2.58 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.59 5.91 -51.93 -0.31 0.28 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.01 0.33 5.23 -51.93 -0.27 0.05 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.35 6.63 4.04 -39.29 -0.16 6.47 16 35 H 0.07 0.80 5.98 -51.93 -0.31 0.48 16 36 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.16 3.33 5.44 -52.49 -0.29 3.05 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -30.56 332.90 -9.80 -40.36 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.70 Total: 5.58 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -3.08 Total: -21.16 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.02 Total: -46.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.56 -9.80 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.879 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds