Wall clock time and date at job start Mon Mar 30 2020 01:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46895 * 2 1 4 4 C 1.52998 * 109.47024 * 240.00337 * 2 1 3 5 5 C 1.53007 * 109.46981 * 175.00035 * 4 2 1 6 6 C 1.50696 * 109.47213 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00120 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00203 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99734 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00264 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46956 * 89.99488 * 10 8 6 12 12 H 1.48495 * 109.47251 * 209.99784 * 10 8 6 13 13 H 1.48501 * 109.47182 * 329.99760 * 10 8 6 14 14 N 1.46896 * 109.47043 * 120.00004 * 2 1 3 15 15 C 1.46903 * 111.00062 * 269.02486 * 14 2 1 16 16 H 1.09001 * 109.30176 * 331.02085 * 15 14 2 17 17 C 1.52797 * 109.30458 * 90.61785 * 15 14 2 18 18 C 1.53319 * 108.49313 * 171.40736 * 17 15 14 19 19 C 1.52818 * 108.47577 * 290.15107 * 18 17 15 20 20 C 1.50340 * 110.46255 * 50.74859 * 19 18 17 21 21 C 1.39083 * 118.69755 * 162.75298 * 20 19 18 22 22 C 1.38053 * 119.33727 * 179.77675 * 21 20 19 23 23 N 1.31897 * 120.58418 * 359.97255 * 22 21 20 24 24 C 1.31668 * 121.64516 * 0.12353 * 23 22 21 25 25 C 1.37837 * 122.82263 * 342.69022 * 20 19 18 26 26 H 1.09003 * 109.47022 * 66.14365 * 1 2 3 27 27 H 1.09001 * 109.46789 * 186.13614 * 1 2 3 28 28 H 1.08993 * 109.46968 * 306.13558 * 1 2 3 29 29 H 1.08998 * 109.46972 * 294.99441 * 4 2 1 30 30 H 1.08992 * 109.47538 * 54.99602 * 4 2 1 31 31 H 1.09000 * 109.46372 * 299.99859 * 5 4 2 32 32 H 1.09002 * 109.47329 * 59.99519 * 5 4 2 33 33 H 0.96995 * 119.99793 * 180.02562 * 9 8 6 34 34 H 1.00901 * 110.99738 * 145.07104 * 14 2 1 35 35 H 1.08996 * 109.63895 * 291.10832 * 17 15 14 36 36 H 1.09003 * 109.63593 * 51.71237 * 17 15 14 37 37 H 1.09004 * 109.63517 * 49.84334 * 18 17 15 38 38 H 1.09003 * 109.64001 * 170.45196 * 18 17 15 39 39 H 1.09000 * 109.31114 * 171.05442 * 19 18 17 40 40 H 1.09003 * 109.30207 * 290.44919 * 19 18 17 41 41 H 1.08010 * 120.33014 * 359.74695 * 21 20 19 42 42 H 1.07995 * 119.70728 * 179.97438 * 22 21 20 43 43 H 1.07994 * 119.49572 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0672 -1.3230 -2.5445 7 1 3.3688 -1.8034 -3.2137 8 6 5.4185 -1.3599 -2.8158 9 7 6.2691 -0.7753 -2.0007 10 14 6.0412 -2.2403 -4.3411 11 1 6.0915 -1.2859 -5.4776 12 1 7.4023 -2.7750 -4.0830 13 1 5.1247 -3.3600 -4.6752 14 7 2.0197 -0.6925 1.1994 15 6 2.2172 0.2508 2.3082 16 1 2.4606 1.2341 1.9057 17 6 0.9305 0.3444 3.1270 18 6 1.2184 1.1586 4.3938 19 6 2.1197 0.3295 5.3079 20 6 3.3097 -0.1849 4.5467 21 6 4.4128 -0.6413 5.2604 22 6 5.5109 -1.1208 4.5748 23 7 5.5191 -1.1487 3.2561 24 6 4.4927 -0.7229 2.5498 25 6 3.3552 -0.2254 3.1696 26 1 -0.3633 0.4156 -0.9399 27 1 -0.3633 -1.0218 0.1099 28 1 -0.3633 0.6060 0.8299 29 1 1.7517 -1.7714 -1.2056 30 1 1.6054 -0.2617 -2.1369 31 1 3.8531 0.4371 -1.3573 32 1 3.9996 -1.0727 -0.4260 33 1 7.2197 -0.8010 -2.1918 34 1 2.8684 -1.2013 1.0020 35 1 0.1581 0.8413 2.5400 36 1 0.5981 -0.6565 3.4026 37 1 1.7231 2.0868 4.1258 38 1 0.2827 1.3817 4.9064 39 1 2.4624 0.9503 6.1357 40 1 1.5535 -0.5135 5.7040 41 1 4.4105 -0.6202 6.3403 42 1 6.3708 -1.4762 5.1230 43 1 4.5368 -0.7612 1.4714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:56 Heat of formation + Delta-G solvation = -8.078679 kcal Electronic energy + Delta-G solvation = -21545.553239 eV Core-core repulsion = 18588.447814 eV Total energy + Delta-G solvation = -2957.105424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78606 -39.02117 -37.27186 -35.27899 -33.92925 -32.26857 -31.77059 -30.38898 -28.82008 -26.93657 -24.99910 -24.19523 -23.56334 -22.65633 -21.23851 -20.48649 -18.61117 -17.84756 -17.45382 -16.86692 -16.58355 -16.42669 -15.73827 -15.28964 -15.19621 -14.73858 -14.55655 -14.42857 -14.35086 -13.93795 -13.51612 -13.40442 -13.25946 -13.02109 -12.88440 -12.79798 -12.51375 -12.36029 -12.17721 -11.87859 -11.83121 -11.62447 -11.38262 -11.24725 -10.89842 -10.56670 -10.34885 -10.28114 -10.08366 -9.30286 -8.21043 -6.32298 0.11536 0.31472 1.37004 1.38651 1.49683 2.39053 2.78145 3.11402 3.23892 3.43675 3.65098 3.68897 3.92222 3.98794 4.06812 4.18645 4.29338 4.31622 4.37988 4.44751 4.50926 4.63955 4.69944 4.75560 4.81993 4.91514 4.96974 4.98161 5.00574 5.04742 5.09117 5.17258 5.28074 5.33319 5.43869 5.47818 5.49785 5.55224 5.67061 5.78761 5.82537 6.21197 6.23688 6.32887 6.83620 7.06066 7.37012 8.89722 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.005318 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.998099 B = 5263.689641 C = 6654.471135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.086 3.914 3 H 0.031 0.969 4 C -0.107 4.107 5 C 0.028 3.972 6 C -0.544 4.544 7 H 0.059 0.941 8 C 0.002 3.998 9 N -0.929 5.929 10 Si 0.962 3.038 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.263 1.263 14 N -0.682 5.682 15 C 0.131 3.869 16 H 0.043 0.957 17 C -0.100 4.100 18 C -0.117 4.117 19 C -0.078 4.078 20 C -0.032 4.032 21 C -0.166 4.166 22 C 0.077 3.923 23 N -0.521 5.521 24 C 0.080 3.920 25 C -0.138 4.138 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.060 0.940 31 H -0.018 1.018 32 H -0.005 1.005 33 H 0.262 0.738 34 H 0.336 0.664 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.176 0.824 42 H 0.179 0.821 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.338 3.745 17.757 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.024 4.024 3 H 0.049 0.951 4 C -0.145 4.145 5 C -0.009 4.009 6 C -0.582 4.582 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.569 5.569 10 Si 0.786 3.214 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.187 1.187 14 N -0.316 5.316 15 C 0.021 3.979 16 H 0.061 0.939 17 C -0.138 4.138 18 C -0.155 4.155 19 C -0.114 4.114 20 C -0.040 4.040 21 C -0.185 4.185 22 C -0.079 4.079 23 N -0.231 5.231 24 C -0.078 4.078 25 C -0.141 4.141 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.001 0.999 32 H 0.014 0.986 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.193 0.807 42 H 0.196 0.804 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.044 3.251 17.539 20.980 hybrid contribution 1.369 0.249 -1.262 1.878 sum -9.675 3.500 16.277 19.256 Atomic orbital electron populations 1.21807 0.92611 1.02367 1.01762 1.21695 0.96963 0.94873 0.88867 0.95065 1.21738 0.96105 0.99919 0.96745 1.19020 0.92185 0.94344 0.95373 1.21657 0.92521 1.34735 1.09240 0.92302 1.25951 0.97368 0.96318 0.99980 1.70102 1.02673 1.45269 1.38808 0.85495 0.77562 0.79016 0.79288 1.19668 1.20945 1.18735 1.60983 1.37198 1.26968 1.06478 1.20472 0.93489 0.93234 0.90727 0.93886 1.21644 0.94905 1.01337 0.95895 1.21619 1.00734 0.97905 0.95257 1.20596 0.92376 1.00815 0.97641 1.20319 0.97198 0.94673 0.91818 1.22528 0.93199 0.99839 1.02943 1.23307 0.99382 0.95911 0.89276 1.67592 1.28942 1.16313 1.10209 1.22686 0.89882 0.95569 0.99673 1.20744 0.96353 1.01431 0.95529 0.92057 0.92276 0.91355 0.92735 0.92089 0.99937 0.98648 0.92957 0.84182 0.90410 0.91124 0.92190 0.88209 0.87781 0.88344 0.80658 0.80370 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.24 71.98 0.67 -2.76 16 2 C 0.09 2.97 2.66 44.92 0.12 3.09 16 3 H 0.03 1.15 7.25 -2.39 -0.02 1.13 16 4 C -0.11 -4.52 4.70 30.60 0.14 -4.38 16 5 C 0.03 1.50 4.82 29.85 0.14 1.64 16 6 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 7 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 10 Si 0.96 45.82 29.54 68.60 2.03 47.84 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 14 N -0.68 -23.72 6.17 -474.04 -2.92 -26.64 16 15 C 0.13 3.91 2.56 44.03 0.11 4.03 16 16 H 0.04 1.40 7.24 -2.39 -0.02 1.39 16 17 C -0.10 -2.15 5.23 30.63 0.16 -1.99 16 18 C -0.12 -1.83 5.98 30.64 0.18 -1.65 16 19 C -0.08 -1.16 5.72 29.67 0.17 -0.99 16 20 C -0.03 -0.75 5.74 -19.87 -0.11 -0.87 16 21 C -0.17 -3.57 9.74 22.43 0.22 -3.35 16 22 C 0.08 2.12 11.19 84.64 0.95 3.07 16 23 N -0.52 -20.04 10.36 -195.64 -2.03 -22.07 16 24 C 0.08 3.15 9.97 84.84 0.85 4.00 16 25 C -0.14 -4.36 5.54 -19.91 -0.11 -4.47 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.55 5.91 -2.39 -0.01 1.53 16 29 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 32 H 0.00 -0.26 5.23 -2.39 -0.01 -0.28 16 33 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 34 H 0.34 13.85 4.04 -89.69 -0.36 13.49 16 35 H 0.08 1.55 5.98 -2.39 -0.01 1.54 16 36 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 37 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 38 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 42 H 0.18 3.69 8.06 -2.91 -0.02 3.66 16 43 H 0.12 5.68 5.44 -2.91 -0.02 5.67 16 Total: -1.00 -71.40 332.90 2.17 -69.23 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.63 Total: 25.39 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 4.18 Total: -35.63 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -4.67 Total: -106.82 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -71.40 2.17 -69.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.149 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds