Wall clock time and date at job start Mon Mar 30 2020 01:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47498 * 2 1 4 4 C 1.52996 * 109.46983 * 119.99799 * 2 1 3 5 5 C 1.53003 * 109.47295 * 184.99694 * 4 2 1 6 6 C 1.50699 * 109.47411 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00046 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99957 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99657 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 119.99970 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47273 * 270.00136 * 10 8 6 12 12 H 1.48502 * 109.47209 * 30.00681 * 10 8 6 13 13 H 1.48508 * 109.47047 * 150.00225 * 10 8 6 14 14 N 1.46897 * 109.47145 * 239.99802 * 2 1 3 15 15 C 1.46902 * 110.99899 * 86.31255 * 14 2 1 16 16 H 1.08988 * 109.30853 * 326.70935 * 15 14 2 17 17 C 1.52802 * 109.30347 * 86.30886 * 15 14 2 18 18 C 1.53314 * 108.49599 * 171.40635 * 17 15 14 19 19 C 1.52824 * 108.47551 * 290.14983 * 18 17 15 20 20 C 1.50346 * 110.46232 * 50.74869 * 19 18 17 21 21 C 1.39072 * 118.69246 * 162.75267 * 20 19 18 22 22 C 1.37251 * 119.50291 * 179.27559 * 21 20 19 23 23 N 1.31886 * 120.53778 * 0.50599 * 22 21 20 24 24 C 1.31666 * 121.64246 * 359.74933 * 23 22 21 25 25 C 1.37566 * 122.74371 * 342.51229 * 20 19 18 26 26 H 1.09000 * 109.47349 * 175.07082 * 1 2 3 27 27 H 1.08999 * 109.46990 * 295.07225 * 1 2 3 28 28 H 1.09004 * 109.47296 * 55.06770 * 1 2 3 29 29 H 1.09002 * 109.47173 * 65.00223 * 4 2 1 30 30 H 1.08998 * 109.47452 * 304.99498 * 4 2 1 31 31 H 1.08999 * 109.47185 * 59.99734 * 5 4 2 32 32 H 1.09003 * 109.47143 * 300.00464 * 5 4 2 33 33 H 0.97000 * 119.99835 * 179.97438 * 9 8 6 34 34 H 1.00900 * 111.00214 * 210.27115 * 14 2 1 35 35 H 1.09004 * 109.63520 * 291.10872 * 17 15 14 36 36 H 1.09008 * 109.63693 * 51.70628 * 17 15 14 37 37 H 1.09000 * 109.63363 * 49.84459 * 18 17 15 38 38 H 1.08997 * 109.63978 * 170.45081 * 18 17 15 39 39 H 1.09000 * 109.30550 * 171.05623 * 19 18 17 40 40 H 1.09002 * 109.30014 * 290.44850 * 19 18 17 41 41 H 1.07999 * 120.34108 * 359.77121 * 21 20 19 42 42 H 1.08006 * 119.75479 * 180.11088 * 22 21 20 43 43 H 1.08004 * 119.49615 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0671 -1.3242 2.5439 7 1 3.3687 -1.8046 3.2131 8 6 5.4184 -1.3605 2.8156 9 7 5.8568 -1.9813 3.8889 10 14 6.6264 -0.5291 1.6585 11 1 7.0620 -1.4962 0.6192 12 1 5.9695 0.6335 1.0088 13 1 7.8083 -0.0635 2.4279 14 7 2.0196 -0.6925 -1.1994 15 6 2.1119 0.2298 -2.3390 16 1 1.3172 0.9721 -2.2672 17 6 3.4668 0.9358 -2.3090 18 6 3.6326 1.7256 -3.6125 19 6 3.8144 0.7332 -4.7604 20 6 2.7306 -0.3085 -4.7311 21 6 2.5048 -1.0693 -5.8732 22 6 1.5297 -2.0351 -5.8600 23 7 0.8021 -2.2382 -4.7789 24 6 0.9842 -1.5338 -3.6814 25 6 1.9552 -0.5444 -3.6196 26 1 -0.3634 -1.0238 -0.0883 27 1 -0.3633 0.4355 0.9308 28 1 -0.3634 0.5885 -0.8425 29 1 1.7516 -1.7715 1.2056 30 1 1.6054 -0.2616 2.1370 31 1 3.8532 0.4369 1.3573 32 1 3.9994 -1.0729 0.4260 33 1 6.8075 -2.0072 4.0798 34 1 2.9072 -1.1386 -1.0224 35 1 3.5056 1.6181 -1.4599 36 1 4.2633 0.1964 -2.2250 37 1 2.7439 2.3314 -3.7893 38 1 4.5098 2.3688 -3.5421 39 1 3.7744 1.2683 -5.7092 40 1 4.7849 0.2462 -4.6653 41 1 3.0968 -0.9082 -6.7619 42 1 1.3521 -2.6296 -6.7441 43 1 0.3682 -1.7290 -2.8160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:08 Heat of formation + Delta-G solvation = 8.838731 kcal Electronic energy + Delta-G solvation = -21491.172396 eV Core-core repulsion = 18534.800566 eV Total energy + Delta-G solvation = -2956.371830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78312 -38.02081 -36.13224 -33.54673 -32.45025 -31.26055 -30.48094 -29.62010 -27.54987 -25.32791 -23.93270 -23.31377 -22.19208 -21.07309 -19.88311 -19.61851 -16.96856 -16.71674 -16.27975 -15.72819 -15.36627 -15.11646 -14.30789 -14.24997 -13.85060 -13.65549 -13.52938 -13.23161 -12.89295 -12.77364 -12.50129 -12.16884 -12.13363 -12.00191 -11.70762 -11.37880 -11.30214 -11.08011 -11.00449 -10.65268 -10.57392 -9.99385 -9.80725 -9.49456 -9.40688 -9.37813 -9.21068 -8.91380 -8.57425 -8.15390 -6.07221 -4.04998 1.17362 1.27061 3.25505 3.33281 3.34535 3.81765 4.26018 4.40792 4.45438 4.53776 4.64577 4.74467 4.90178 5.01171 5.12822 5.25347 5.25715 5.29921 5.31267 5.42989 5.58143 5.59714 5.63888 5.72683 5.74068 5.79778 5.87631 5.98267 6.09401 6.16759 6.17460 6.21481 6.36408 6.38661 6.40399 6.69019 6.78818 6.82054 7.23135 7.24166 7.45970 7.67135 7.76725 8.06198 8.51584 8.98742 9.55215 11.06464 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.005128 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.808840 B = 5459.328921 C = 6057.396269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.080 3.920 3 H 0.041 0.959 4 C -0.107 4.107 5 C -0.013 4.013 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.067 3.933 9 N -0.903 5.903 10 Si 0.878 3.122 11 H -0.277 1.277 12 H -0.267 1.267 13 H -0.288 1.288 14 N -0.681 5.681 15 C 0.132 3.868 16 H 0.088 0.912 17 C -0.152 4.152 18 C -0.115 4.115 19 C -0.084 4.084 20 C -0.034 4.034 21 C -0.183 4.183 22 C 0.088 3.912 23 N -0.495 5.495 24 C 0.134 3.866 25 C -0.117 4.117 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.012 0.988 32 H 0.008 0.992 33 H 0.263 0.737 34 H 0.353 0.647 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 7.116 -19.230 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.059 0.941 4 C -0.145 4.145 5 C -0.051 4.051 6 C -0.557 4.557 7 H 0.090 0.910 8 C -0.134 4.134 9 N -0.542 5.542 10 Si 0.705 3.295 11 H -0.203 1.203 12 H -0.192 1.192 13 H -0.214 1.214 14 N -0.314 5.314 15 C 0.021 3.979 16 H 0.106 0.894 17 C -0.191 4.191 18 C -0.153 4.153 19 C -0.121 4.121 20 C -0.042 4.042 21 C -0.203 4.203 22 C -0.066 4.066 23 N -0.204 5.204 24 C -0.025 4.025 25 C -0.120 4.120 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.030 0.970 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.175 0.825 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.146 0.854 42 H 0.167 0.833 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.099 6.161 -19.312 21.829 hybrid contribution 2.358 1.471 -0.314 2.797 sum -5.741 7.633 -19.626 21.826 Atomic orbital electron populations 1.21821 0.95352 1.02009 1.00438 1.21670 0.94837 0.96185 0.90180 0.94118 1.21673 0.98025 1.00190 0.94598 1.19595 0.91947 0.96450 0.97062 1.21132 0.92905 1.34194 1.07426 0.90978 1.25036 0.98406 0.94942 0.95058 1.69911 1.14592 1.43371 1.26297 0.86810 0.80935 0.80430 0.81287 1.20326 1.19156 1.21402 1.60661 1.35608 1.30612 1.04553 1.20244 0.96669 0.92562 0.88385 0.89400 1.22343 0.98370 1.00331 0.98088 1.21512 1.02200 0.97427 0.94175 1.20499 0.96874 0.95093 0.99624 1.19828 0.95482 0.96019 0.92911 1.21832 1.00961 0.98616 0.98923 1.22438 0.92093 0.95538 0.96534 1.67708 1.26411 1.26228 1.00047 1.22955 0.94680 0.89752 0.95126 1.20458 0.97307 0.98961 0.95272 0.92032 0.92696 0.93810 0.91798 0.92013 0.96995 0.97424 0.92747 0.82461 0.90890 0.91147 0.91564 0.91207 0.90488 0.90101 0.85373 0.83340 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.39 37.16 0.35 -1.45 16 2 C 0.08 1.22 2.44 -67.72 -0.17 1.05 16 3 H 0.04 0.62 7.29 -51.93 -0.38 0.24 16 4 C -0.11 -2.02 4.73 -26.73 -0.13 -2.15 16 5 C -0.01 -0.30 3.87 -27.88 -0.11 -0.41 16 6 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 7 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 10 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 N -0.68 -9.96 5.22 -101.19 -0.53 -10.49 16 15 C 0.13 1.68 2.30 -69.08 -0.16 1.52 16 16 H 0.09 1.07 7.24 -51.94 -0.38 0.69 16 17 C -0.15 -1.89 5.22 -26.67 -0.14 -2.03 16 18 C -0.11 -1.13 5.98 -26.66 -0.16 -1.29 16 19 C -0.08 -0.80 5.72 -28.14 -0.16 -0.96 16 20 C -0.03 -0.39 5.73 -104.73 -0.60 -0.99 16 21 C -0.18 -1.94 9.70 -39.63 -0.38 -2.33 16 22 C 0.09 1.02 11.16 -17.89 -0.20 0.82 16 23 N -0.50 -6.93 10.36 -13.39 -0.14 -7.07 16 24 C 0.13 1.84 10.41 -17.43 -0.18 1.66 16 25 C -0.12 -1.51 5.53 -104.79 -0.58 -2.09 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.51 7.60 -51.93 -0.39 0.12 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 32 H 0.01 0.17 5.86 -51.93 -0.30 -0.13 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.35 5.84 6.06 -39.29 -0.24 5.60 16 35 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 36 H 0.07 0.97 7.92 -51.92 -0.41 0.56 16 37 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.16 2.22 7.65 -52.48 -0.40 1.82 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -30.58 337.06 -9.62 -40.19 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.09 Total: 4.24 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.04 Total: -21.72 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.11 Total: -44.59 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.58 -9.62 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.030 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds