Wall clock time and date at job start Mon Mar 30 2020 01:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.46790 * 2 1 4 4 C 1.48557 * 111.00060 * 174.97945 * 3 2 1 5 5 C 1.54385 * 104.59347 * 200.96302 * 4 3 2 6 6 C 1.54258 * 105.06211 * 23.85170 * 5 4 3 7 7 H 1.09001 * 110.32127 * 241.00546 * 6 5 4 8 8 N 1.46499 * 110.32453 * 118.89987 * 6 5 4 9 9 C 1.36935 * 119.99813 * 300.44914 * 8 6 5 10 10 H 1.08004 * 120.00420 * 51.24662 * 9 8 6 11 11 C 1.38807 * 120.00139 * 231.24718 * 9 8 6 12 12 N 1.31622 * 120.00346 * 202.28072 * 11 9 8 13 13 Si 1.86800 * 120.00098 * 22.27706 * 11 9 8 14 14 H 1.48496 * 109.47085 * 174.43548 * 13 11 9 15 15 H 1.48506 * 109.46927 * 54.43650 * 13 11 9 16 16 H 1.48499 * 109.47108 * 294.43969 * 13 11 9 17 17 C 1.46497 * 120.00134 * 120.44975 * 8 6 5 18 18 C 1.50704 * 109.47001 * 276.49861 * 17 8 6 19 19 C 1.38233 * 119.99721 * 269.72650 * 18 17 8 20 20 C 1.38242 * 119.99965 * 179.78905 * 19 18 17 21 21 C 1.38235 * 119.99433 * 0.44068 * 20 19 18 22 22 C 1.38235 * 120.00418 * 359.81620 * 21 20 19 23 23 C 1.38231 * 120.00124 * 90.00042 * 18 17 8 24 24 C 1.48568 * 110.99974 * 59.56148 * 3 2 1 25 25 H 1.09004 * 109.46773 * 183.57053 * 1 2 3 26 26 H 1.08993 * 109.47615 * 303.56702 * 1 2 3 27 27 H 1.08998 * 109.47495 * 63.57180 * 1 2 3 28 28 H 1.08993 * 109.47284 * 240.00476 * 2 1 3 29 29 H 1.08996 * 109.47620 * 119.99724 * 2 1 3 30 30 H 1.08993 * 110.41318 * 82.18424 * 4 3 2 31 31 H 1.09000 * 110.41090 * 319.73555 * 4 3 2 32 32 H 1.09007 * 110.32375 * 264.95421 * 5 4 3 33 33 H 1.09002 * 110.32133 * 142.75073 * 5 4 3 34 34 H 0.97004 * 119.99498 * 359.97438 * 12 11 9 35 35 H 1.08999 * 109.47231 * 36.49880 * 17 8 6 36 36 H 1.08997 * 109.46829 * 156.50015 * 17 8 6 37 37 H 1.08006 * 120.00350 * 359.97438 * 19 18 17 38 38 H 1.08000 * 120.00237 * 180.27401 * 20 19 18 39 39 H 1.08004 * 119.99747 * 179.83326 * 21 20 19 40 40 H 1.07994 * 120.00187 * 179.97438 * 22 21 20 41 41 H 1.08006 * 119.99782 * 359.97438 * 23 18 17 42 42 H 1.09001 * 110.41150 * 40.25806 * 24 3 2 43 43 H 1.09000 * 110.40940 * 277.81944 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 3.4996 1.4266 0.1214 5 6 3.8075 2.8470 0.6419 6 6 2.5147 3.3040 1.3486 7 1 2.1137 4.1949 0.8654 8 7 2.7758 3.5687 2.7657 9 6 3.2525 2.5700 3.5722 10 1 4.1215 2.0026 3.2730 11 6 2.6190 2.2867 4.7743 12 7 3.2757 1.6730 5.7358 13 14 0.8342 2.7766 5.0276 14 1 0.3556 2.2471 6.3298 15 1 0.0062 2.2148 3.9303 16 1 0.7221 4.2573 5.0240 17 6 2.5270 4.9017 3.3198 18 6 3.7162 5.7875 3.0509 19 6 4.7474 5.8576 3.9688 20 6 5.8403 6.6667 3.7202 21 6 5.8976 7.4128 2.5579 22 6 4.8639 7.3469 1.6425 23 6 3.7731 6.5343 1.8891 24 6 1.5345 2.1212 1.1958 25 1 -0.3633 -1.0257 0.0640 26 1 -0.3634 0.5682 0.8562 27 1 -0.3634 0.4574 -0.9202 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9653 1.2689 -0.8513 31 1 3.8436 0.6776 0.8346 32 1 4.0401 3.5127 -0.1894 33 1 4.6363 2.8196 1.3492 34 1 4.2024 1.4183 5.6042 35 1 1.6412 5.3305 2.8512 36 1 2.3675 4.8241 4.3953 37 1 4.7007 5.2778 4.8789 38 1 6.6481 6.7181 4.4353 39 1 6.7502 8.0471 2.3648 40 1 4.9085 7.9301 0.7346 41 1 2.9655 6.4827 1.1738 42 1 1.5710 1.4809 2.0772 43 1 0.5206 2.4865 1.0320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173373229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:48 Heat of formation + Delta-G solvation = 46.414351 kcal Electronic energy + Delta-G solvation = -22083.654608 eV Core-core repulsion = 19128.912179 eV Total energy + Delta-G solvation = -2954.742429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.95721 -38.31447 -35.40450 -32.53757 -31.94847 -30.35485 -30.27215 -27.86171 -27.65765 -25.36450 -23.34369 -21.97069 -21.77757 -20.64325 -20.24463 -19.23872 -17.33365 -16.20836 -15.61234 -15.48310 -14.70839 -14.68220 -14.40512 -13.81351 -13.51577 -13.22155 -13.12787 -13.04183 -12.86426 -12.46602 -12.13711 -11.93906 -11.80840 -11.41611 -11.13317 -11.00888 -10.81551 -10.67463 -10.57519 -10.41141 -10.32564 -10.19083 -9.94961 -9.78473 -9.27057 -8.43456 -8.39378 -8.15109 -7.96804 -6.97705 -6.19194 -3.66736 1.90709 1.94187 3.37959 3.46510 3.64710 4.28040 4.51320 4.51627 5.16809 5.21318 5.33038 5.37038 5.38322 5.42896 5.50801 5.53054 5.68924 5.74384 5.79209 5.83245 5.99755 6.04739 6.06789 6.09308 6.22995 6.25037 6.30614 6.35445 6.42507 6.52054 6.60320 6.61044 6.69188 6.73293 6.86047 6.95455 6.98228 7.03969 7.33045 7.37159 7.56321 7.57373 8.20735 8.55336 8.98218 9.49748 10.19708 10.96163 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.007519 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.660301 B = 3722.763789 C = 4827.024002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 N -0.515 5.515 4 C 0.040 3.960 5 C -0.129 4.129 6 C 0.172 3.828 7 H 0.057 0.943 8 N -0.584 5.584 9 C -0.348 4.348 10 H 0.051 0.949 11 C 0.011 3.989 12 N -0.903 5.903 13 Si 1.045 2.955 14 H -0.296 1.296 15 H -0.285 1.285 16 H -0.282 1.282 17 C 0.167 3.833 18 C -0.075 4.075 19 C -0.098 4.098 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.128 4.128 23 C -0.119 4.119 24 C 0.022 3.978 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.267 0.733 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 5.184 -8.725 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 N -0.240 5.240 4 C -0.088 4.088 5 C -0.168 4.168 6 C 0.064 3.936 7 H 0.075 0.925 8 N -0.305 5.305 9 C -0.477 4.477 10 H 0.069 0.931 11 C -0.194 4.194 12 N -0.538 5.538 13 Si 0.874 3.126 14 H -0.223 1.223 15 H -0.212 1.212 16 H -0.209 1.209 17 C 0.042 3.958 18 C -0.078 4.078 19 C -0.117 4.117 20 C -0.144 4.144 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.107 4.107 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.086 0.914 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.334 5.324 -8.108 9.977 hybrid contribution 1.753 -0.511 -0.438 1.878 sum -0.580 4.813 -8.546 9.825 Atomic orbital electron populations 1.21778 0.95321 1.01114 1.02340 1.22171 0.95826 0.90584 1.00222 1.65435 1.06687 1.12354 1.39529 1.22953 0.88713 0.98027 0.99087 1.22664 1.00494 0.94630 0.99058 1.21147 0.91985 0.94727 0.85733 0.92472 1.44177 1.76072 1.05218 1.04996 1.19747 1.10528 1.14400 1.03060 0.93129 1.26555 1.04342 0.95769 0.92740 1.70932 1.12178 1.39538 1.31172 0.84063 0.76797 0.76312 0.75397 1.22282 1.21174 1.20944 1.20481 0.91330 0.84733 0.99263 1.21011 0.98767 0.94481 0.93540 1.21118 0.93368 0.97388 0.99838 1.21089 0.98213 0.97724 0.97371 1.20931 0.98746 1.00952 0.95263 1.20980 0.94731 0.99937 0.98978 1.20980 0.98205 0.97332 0.97271 1.23571 0.98310 0.97162 0.91673 0.92837 0.92358 0.92362 0.91599 0.94803 0.91772 0.94126 0.92959 0.90792 0.92320 0.93917 0.90933 0.86119 0.87036 0.87244 0.87173 0.87041 0.91419 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.84 37.15 0.37 -1.71 16 2 C 0.04 0.64 5.65 -3.82 -0.02 0.62 16 3 N -0.52 -9.09 5.45 -229.97 -1.25 -10.34 16 4 C 0.04 0.72 6.49 -2.18 -0.01 0.70 16 5 C -0.13 -2.43 6.44 -25.35 -0.16 -2.60 16 6 C 0.17 3.40 3.58 -66.55 -0.24 3.16 16 7 H 0.06 1.06 7.92 -51.93 -0.41 0.65 16 8 N -0.58 -12.91 1.74 -165.46 -0.29 -13.20 16 9 C -0.35 -8.96 7.74 -15.06 -0.12 -9.07 16 10 H 0.05 1.47 7.40 -52.48 -0.39 1.08 16 11 C 0.01 0.31 5.16 -17.43 -0.09 0.22 16 12 N -0.90 -26.34 13.71 55.49 0.76 -25.58 16 13 Si 1.04 24.67 26.95 -169.99 -4.58 20.09 16 14 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.18 5.90 56.52 0.33 -5.84 16 17 C 0.17 3.45 4.30 -5.19 -0.02 3.43 16 18 C -0.08 -1.43 5.45 -104.62 -0.57 -2.00 16 19 C -0.10 -1.87 9.70 -39.58 -0.38 -2.26 16 20 C -0.13 -2.08 10.05 -39.58 -0.40 -2.47 16 21 C -0.14 -2.12 10.05 -39.58 -0.40 -2.52 16 22 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 23 C -0.12 -2.00 9.70 -39.59 -0.38 -2.39 16 24 C 0.02 0.43 4.91 -2.18 -0.01 0.42 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.89 6.75 -51.93 -0.35 0.54 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.58 7.97 -51.93 -0.41 0.17 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.78 7.90 -51.93 -0.41 0.37 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.59 7.01 -51.93 -0.36 1.22 16 34 H 0.27 7.80 8.73 -40.82 -0.36 7.44 16 35 H 0.04 0.81 8.01 -51.93 -0.42 0.39 16 36 H 0.07 1.62 5.04 -51.93 -0.26 1.36 16 37 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 42 H 0.07 1.54 6.82 -51.93 -0.35 1.19 16 43 H 0.06 1.18 7.58 -51.93 -0.39 0.79 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -27.48 339.19 -10.30 -37.78 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.21 Total: 4.96 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -2.84 Total: -18.82 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.78 Total: -49.12 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.58 Total: 20.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.48 -10.30 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173373229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.194 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds