Wall clock time and date at job start Mon Mar 30 2020 01:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.46790 * 2 1 4 4 C 1.48557 * 111.00060 * 174.97945 * 3 2 1 5 5 C 1.54385 * 104.59347 * 200.96302 * 4 3 2 6 6 C 1.54258 * 105.06211 * 23.85170 * 5 4 3 7 7 H 1.09001 * 110.32127 * 241.00546 * 6 5 4 8 8 N 1.46499 * 110.32453 * 118.89987 * 6 5 4 9 9 C 1.36935 * 119.99813 * 300.44914 * 8 6 5 10 10 H 1.08004 * 120.00420 * 51.24662 * 9 8 6 11 11 C 1.38807 * 120.00139 * 231.24718 * 9 8 6 12 12 N 1.31622 * 120.00346 * 202.28072 * 11 9 8 13 13 Si 1.86800 * 120.00098 * 22.27706 * 11 9 8 14 14 H 1.48496 * 109.47085 * 174.43548 * 13 11 9 15 15 H 1.48506 * 109.46927 * 54.43650 * 13 11 9 16 16 H 1.48499 * 109.47108 * 294.43969 * 13 11 9 17 17 C 1.46497 * 120.00134 * 120.44975 * 8 6 5 18 18 C 1.50704 * 109.47001 * 276.49861 * 17 8 6 19 19 C 1.38233 * 119.99721 * 269.72650 * 18 17 8 20 20 C 1.38242 * 119.99965 * 179.78905 * 19 18 17 21 21 C 1.38235 * 119.99433 * 0.44068 * 20 19 18 22 22 C 1.38235 * 120.00418 * 359.81620 * 21 20 19 23 23 C 1.38231 * 120.00124 * 90.00042 * 18 17 8 24 24 C 1.48568 * 110.99974 * 59.56148 * 3 2 1 25 25 H 1.09004 * 109.46773 * 183.57053 * 1 2 3 26 26 H 1.08993 * 109.47615 * 303.56702 * 1 2 3 27 27 H 1.08998 * 109.47495 * 63.57180 * 1 2 3 28 28 H 1.08993 * 109.47284 * 240.00476 * 2 1 3 29 29 H 1.08996 * 109.47620 * 119.99724 * 2 1 3 30 30 H 1.08993 * 110.41318 * 82.18424 * 4 3 2 31 31 H 1.09000 * 110.41090 * 319.73555 * 4 3 2 32 32 H 1.09007 * 110.32375 * 264.95421 * 5 4 3 33 33 H 1.09002 * 110.32133 * 142.75073 * 5 4 3 34 34 H 0.97004 * 119.99498 * 359.97438 * 12 11 9 35 35 H 1.08999 * 109.47231 * 36.49880 * 17 8 6 36 36 H 1.08997 * 109.46829 * 156.50015 * 17 8 6 37 37 H 1.08006 * 120.00350 * 359.97438 * 19 18 17 38 38 H 1.08000 * 120.00237 * 180.27401 * 20 19 18 39 39 H 1.08004 * 119.99747 * 179.83326 * 21 20 19 40 40 H 1.07994 * 120.00187 * 179.97438 * 22 21 20 41 41 H 1.08006 * 119.99782 * 359.97438 * 23 18 17 42 42 H 1.09001 * 110.41150 * 40.25806 * 24 3 2 43 43 H 1.09000 * 110.40940 * 277.81944 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 3.4996 1.4266 0.1214 5 6 3.8075 2.8470 0.6419 6 6 2.5147 3.3040 1.3486 7 1 2.1137 4.1949 0.8654 8 7 2.7758 3.5687 2.7657 9 6 3.2525 2.5700 3.5722 10 1 4.1215 2.0026 3.2730 11 6 2.6190 2.2867 4.7743 12 7 3.2757 1.6730 5.7358 13 14 0.8342 2.7766 5.0276 14 1 0.3556 2.2471 6.3298 15 1 0.0062 2.2148 3.9303 16 1 0.7221 4.2573 5.0240 17 6 2.5270 4.9017 3.3198 18 6 3.7162 5.7875 3.0509 19 6 4.7474 5.8576 3.9688 20 6 5.8403 6.6667 3.7202 21 6 5.8976 7.4128 2.5579 22 6 4.8639 7.3469 1.6425 23 6 3.7731 6.5343 1.8891 24 6 1.5345 2.1212 1.1958 25 1 -0.3633 -1.0257 0.0640 26 1 -0.3634 0.5682 0.8562 27 1 -0.3634 0.4574 -0.9202 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9653 1.2689 -0.8513 31 1 3.8436 0.6776 0.8346 32 1 4.0401 3.5127 -0.1894 33 1 4.6363 2.8196 1.3492 34 1 4.2024 1.4183 5.6042 35 1 1.6412 5.3305 2.8512 36 1 2.3675 4.8241 4.3953 37 1 4.7007 5.2778 4.8789 38 1 6.6481 6.7181 4.4353 39 1 6.7502 8.0471 2.3648 40 1 4.9085 7.9301 0.7346 41 1 2.9655 6.4827 1.1738 42 1 1.5710 1.4809 2.0772 43 1 0.5206 2.4865 1.0320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173373229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:47 Heat of formation + Delta-G solvation = 31.192966 kcal Electronic energy + Delta-G solvation = -22084.314657 eV Core-core repulsion = 19128.912179 eV Total energy + Delta-G solvation = -2955.402478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43822 -39.70562 -37.05122 -34.21086 -33.62057 -31.78122 -31.65673 -29.28704 -29.20982 -27.10020 -24.95329 -23.29256 -23.28114 -22.07898 -21.70537 -20.97210 -19.21526 -17.60274 -17.12507 -17.02365 -16.30221 -16.07379 -15.79837 -15.44511 -15.07119 -14.85127 -14.81096 -14.54893 -14.16882 -13.94089 -13.63001 -13.33643 -13.20298 -12.97018 -12.57988 -12.55278 -12.22745 -12.17969 -12.06688 -11.93040 -11.80828 -11.70795 -11.59462 -11.50306 -11.22549 -10.47764 -9.70400 -9.53106 -9.46866 -8.99810 -8.20636 -5.77655 0.59226 0.61901 1.46023 1.53171 1.73037 2.54076 2.86623 3.07276 3.18477 3.63150 3.87965 3.96336 4.06413 4.16676 4.22073 4.26121 4.32594 4.36423 4.40530 4.49753 4.53187 4.59747 4.74322 4.74949 4.79728 4.89558 4.94357 4.99076 5.01831 5.02861 5.16857 5.24653 5.25491 5.28552 5.32165 5.39186 5.68412 5.70533 5.83415 5.94032 5.99972 6.12298 6.26187 6.45614 6.99925 7.58040 8.17482 8.80194 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.007519 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.660301 B = 3722.763789 C = 4827.024002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.037 3.963 3 N -0.505 5.505 4 C 0.044 3.956 5 C -0.121 4.121 6 C 0.167 3.833 7 H 0.082 0.918 8 N -0.591 5.591 9 C -0.316 4.316 10 H 0.005 0.995 11 C -0.037 4.037 12 N -0.943 5.943 13 Si 1.080 2.920 14 H -0.310 1.310 15 H -0.270 1.270 16 H -0.254 1.254 17 C 0.166 3.834 18 C -0.096 4.096 19 C -0.127 4.127 20 C -0.132 4.132 21 C -0.133 4.133 22 C -0.122 4.122 23 C -0.120 4.120 24 C 0.028 3.972 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.010 0.990 30 H 0.093 0.907 31 H 0.013 0.987 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.131 0.869 42 H 0.028 0.972 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 7.545 -12.119 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.092 4.092 3 N -0.230 5.230 4 C -0.085 4.085 5 C -0.161 4.161 6 C 0.060 3.940 7 H 0.100 0.900 8 N -0.312 5.312 9 C -0.447 4.447 10 H 0.023 0.977 11 C -0.235 4.235 12 N -0.582 5.582 13 Si 0.905 3.095 14 H -0.238 1.238 15 H -0.195 1.195 16 H -0.179 1.179 17 C 0.042 3.958 18 C -0.098 4.098 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.101 4.101 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.029 0.971 30 H 0.111 0.889 31 H 0.031 0.969 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.145 0.855 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.149 0.851 42 H 0.046 0.954 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.211 7.713 -11.541 14.248 hybrid contribution 2.162 -1.190 0.509 2.520 sum -1.049 6.523 -11.032 12.859 Atomic orbital electron populations 1.21742 0.93639 1.02323 1.02244 1.22302 0.97283 0.89361 1.00214 1.65502 1.06201 1.13431 1.37833 1.22948 0.89200 0.96582 0.99727 1.22558 0.98788 0.95872 0.98895 1.21324 0.92561 0.95864 0.84219 0.89960 1.44190 1.76063 1.05290 1.05688 1.19331 1.08126 1.14183 1.03012 0.97720 1.27555 1.07146 0.95886 0.92886 1.71046 1.11498 1.43019 1.32658 0.83598 0.72995 0.77881 0.74995 1.23775 1.19512 1.17910 1.20437 0.93252 0.84211 0.97924 1.20846 0.98080 0.95891 0.95020 1.21045 0.95309 0.98898 0.99392 1.21308 0.97673 0.97324 0.98710 1.21363 0.99740 1.00044 0.93999 1.21419 0.93564 0.98975 0.99988 1.21185 0.99484 0.96855 0.96339 1.23443 0.99130 0.96592 0.90966 0.90896 0.94063 0.90902 0.89268 0.97140 0.88912 0.96894 0.90479 0.94360 0.94172 0.91389 0.93497 0.89422 0.85509 0.83739 0.83471 0.85113 0.95392 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.84 71.98 0.71 -2.96 16 2 C 0.04 1.11 5.65 86.30 0.49 1.60 16 3 N -0.51 -16.97 5.45 -881.50 -4.80 -21.77 16 4 C 0.04 1.51 6.49 86.45 0.56 2.08 16 5 C -0.12 -4.48 6.44 31.49 0.20 -4.28 16 6 C 0.17 6.40 3.58 45.88 0.16 6.56 16 7 H 0.08 2.78 7.92 -2.39 -0.02 2.76 16 8 N -0.59 -26.40 1.74 -677.39 -1.18 -27.57 16 9 C -0.32 -17.18 7.74 84.03 0.65 -16.53 16 10 H 0.01 0.33 7.40 -2.91 -0.02 0.30 16 11 C -0.04 -2.07 5.16 84.86 0.44 -1.64 16 12 N -0.94 -58.78 13.71 21.65 0.30 -58.48 16 13 Si 1.08 51.13 26.95 68.60 1.85 52.98 16 14 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 16 H -0.25 -10.75 5.90 99.48 0.59 -10.16 16 17 C 0.17 6.80 4.30 85.63 0.37 7.17 16 18 C -0.10 -3.60 5.45 -19.87 -0.11 -3.70 16 19 C -0.13 -4.98 9.70 22.27 0.22 -4.76 16 20 C -0.13 -4.22 10.05 22.27 0.22 -3.99 16 21 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 22 C -0.12 -3.16 10.05 22.27 0.22 -2.93 16 23 C -0.12 -3.65 9.70 22.27 0.22 -3.44 16 24 C 0.03 1.08 4.91 86.45 0.42 1.50 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.04 1.20 6.75 -2.39 -0.02 1.18 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.01 0.36 7.97 -2.39 -0.02 0.34 16 30 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.01 0.51 7.90 -2.39 -0.02 0.49 16 32 H 0.08 2.45 8.14 -2.38 -0.02 2.44 16 33 H 0.04 1.68 7.01 -2.39 -0.02 1.66 16 34 H 0.25 15.84 8.73 -92.70 -0.81 15.03 16 35 H 0.07 2.41 8.01 -2.39 -0.02 2.39 16 36 H 0.05 2.13 5.04 -2.39 -0.01 2.12 16 37 H 0.09 3.89 8.06 -2.91 -0.02 3.87 16 38 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 39 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 42 H 0.03 1.30 6.82 -2.39 -0.02 1.28 16 43 H 0.08 2.73 7.58 -2.39 -0.02 2.71 16 Total: -1.00 -64.26 339.19 1.97 -62.30 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.80 Total: 21.20 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 5.00 Total: -28.64 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -5.68 Total: -107.83 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 1.85 Total: 52.98 kcal Total: -64.26 1.97 -62.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173373229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.490 kcal (2) G-P(sol) polarization free energy of solvation -64.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds