Wall clock time and date at job start Mon Mar 30 2020 01:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39669 * 120.00353 * 2 1 4 4 C 1.38938 * 120.07387 * 359.97438 * 3 2 1 5 5 C 1.38079 * 119.92368 * 179.97438 * 4 3 2 6 6 C 1.38302 * 120.07711 * 0.02562 * 5 4 3 7 7 C 1.38266 * 120.15175 * 359.97438 * 6 5 4 8 8 C 1.38127 * 120.07239 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.03545 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.46931 * 260.01759 * 9 8 7 11 11 C 1.46905 * 111.00002 * 190.00160 * 10 9 8 12 12 C 1.50696 * 109.47129 * 75.42902 * 11 10 9 13 13 H 1.08000 * 120.00248 * 355.86610 * 12 11 10 14 14 C 1.37878 * 120.00203 * 175.87395 * 12 11 10 15 15 N 1.31512 * 119.99810 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00038 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47386 * 89.99921 * 16 14 12 18 18 H 1.48507 * 109.46732 * 209.99668 * 16 14 12 19 19 H 1.48499 * 109.46917 * 329.99165 * 16 14 12 20 20 C 1.46905 * 110.99922 * 66.04842 * 10 9 8 21 21 C 1.53001 * 109.46735 * 195.78140 * 20 10 9 22 22 C 1.52998 * 117.49821 * 244.13482 * 21 20 10 23 23 C 1.52994 * 117.49731 * 175.47716 * 21 20 10 24 24 H 1.09005 * 109.46905 * 59.99992 * 1 2 3 25 25 H 1.09003 * 109.47574 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47228 * 300.00233 * 1 2 3 27 27 H 0.97003 * 119.99711 * 179.97438 * 2 1 3 28 28 H 1.07998 * 120.03377 * 359.95712 * 4 3 2 29 29 H 1.08009 * 119.95973 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.92554 * 179.72823 * 6 5 4 31 31 H 1.08003 * 119.96369 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47655 * 20.01484 * 9 8 7 33 33 H 1.09000 * 109.47342 * 140.02242 * 9 8 7 34 34 H 1.08996 * 109.46749 * 195.42977 * 11 10 9 35 35 H 1.08998 * 109.47075 * 315.43074 * 11 10 9 36 36 H 0.96996 * 120.00149 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.46529 * 315.77989 * 20 10 9 38 38 H 1.08998 * 109.47043 * 75.78245 * 20 10 9 39 39 H 1.08998 * 115.55034 * 29.80899 * 21 20 10 40 40 H 1.09004 * 117.50083 * 0.02562 * 22 21 20 41 41 H 1.09001 * 117.50049 * 145.02010 * 22 21 20 42 42 H 1.09003 * 117.50157 * 214.98012 * 23 21 20 43 43 H 1.09001 * 117.50014 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1634 1.2095 0.0000 4 6 1.4703 2.4137 -0.0005 5 6 2.1639 3.6076 0.0000 6 6 3.5469 3.6058 0.0005 7 6 4.2398 2.4093 0.0011 8 6 3.5523 1.2113 0.0005 9 6 4.3083 -0.0923 0.0005 10 7 4.3468 -0.6360 -1.3637 11 6 4.8638 -2.0110 -1.3680 12 6 3.8002 -2.9492 -0.8586 13 1 2.8608 -2.5563 -0.4987 14 6 4.0264 -4.3093 -0.8517 15 7 5.1702 -4.7879 -1.2902 16 14 2.7077 -5.4723 -0.2209 17 1 1.8247 -5.8757 -1.3446 18 1 3.3490 -6.6782 0.3622 19 1 1.9013 -4.7876 0.8213 20 6 5.1374 0.2265 -2.2520 21 6 4.8408 -0.1339 -3.7091 22 6 5.9911 -0.6980 -4.5455 23 6 5.4891 0.7263 -4.7956 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.9499 -0.8401 0.0004 28 1 0.3903 2.4158 -0.0017 29 1 1.6257 4.5441 0.0000 30 1 4.0870 4.5411 -0.0035 31 1 5.3198 2.4114 0.0019 32 1 5.3258 0.0777 0.3527 33 1 3.8091 -0.8018 0.6604 34 1 5.1399 -2.2921 -2.3842 35 1 5.7406 -2.0715 -0.7233 36 1 5.3292 -5.7447 -1.2858 37 1 4.8739 1.2692 -2.0748 38 1 6.1985 0.0804 -2.0503 39 1 3.8404 -0.5206 -3.9035 40 1 6.9591 -0.8127 -4.0576 41 1 5.7474 -1.4555 -5.2904 42 1 4.9155 0.9052 -5.7050 43 1 6.1266 1.5492 -4.4724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180029851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:20 Heat of formation + Delta-G solvation = 54.142588 kcal Electronic energy + Delta-G solvation = -21657.016268 eV Core-core repulsion = 18702.608960 eV Total energy + Delta-G solvation = -2954.407308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.42105 -37.51091 -35.35483 -35.03262 -32.65558 -30.98297 -29.30556 -27.61496 -26.41837 -25.44527 -23.85674 -21.96137 -21.49539 -21.08490 -20.35370 -19.45250 -17.14630 -16.37788 -15.82832 -15.45174 -14.86779 -14.73205 -14.31030 -14.01701 -13.79890 -13.70363 -13.39329 -13.28696 -12.73931 -12.26133 -11.99348 -11.94551 -11.81149 -11.67490 -11.23935 -11.12497 -10.87115 -10.80779 -10.65318 -10.57858 -10.34970 -9.94018 -9.80634 -9.72718 -9.33345 -9.18693 -8.45498 -8.36247 -7.23049 -6.91187 -6.04075 -4.05688 1.79295 2.04273 3.28128 3.34869 3.35758 3.98058 4.21613 4.30943 4.40147 4.95232 5.22217 5.26850 5.30640 5.35209 5.41551 5.43204 5.46233 5.67374 5.69433 5.72182 5.88281 5.93806 5.96492 6.04090 6.04471 6.15773 6.22141 6.31387 6.33481 6.41065 6.52679 6.56508 6.75155 6.82643 6.90276 7.00107 7.26918 7.30100 7.39257 7.74604 7.83025 8.13525 8.24028 8.28293 8.54979 9.00834 9.57904 11.06204 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.007099 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.826977 B = 3942.996932 C = 5444.028171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.741 5.741 3 C 0.241 3.759 4 C -0.208 4.208 5 C -0.080 4.080 6 C -0.189 4.189 7 C -0.072 4.072 8 C -0.143 4.143 9 C 0.105 3.895 10 N -0.527 5.527 11 C 0.191 3.809 12 C -0.502 4.502 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 C 0.086 3.914 21 C -0.125 4.125 22 C -0.179 4.179 23 C -0.190 4.190 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.416 0.584 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.028 0.972 33 H 0.082 0.918 34 H 0.040 0.960 35 H -0.013 1.013 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.021 0.979 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 13.132 0.265 13.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.371 5.371 3 C 0.135 3.865 4 C -0.231 4.231 5 C -0.099 4.099 6 C -0.210 4.210 7 C -0.092 4.092 8 C -0.148 4.148 9 C -0.023 4.023 10 N -0.251 5.251 11 C 0.066 3.934 12 C -0.541 4.541 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.043 4.043 21 C -0.143 4.143 22 C -0.216 4.216 23 C -0.227 4.227 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.255 0.745 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.005 0.995 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.039 0.961 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.876 12.897 0.070 13.788 hybrid contribution 0.337 -1.090 0.493 1.243 sum -4.539 11.807 0.562 12.662 Atomic orbital electron populations 1.21457 0.81296 1.02096 1.00177 1.44756 1.05176 1.06511 1.80698 1.17623 0.90566 0.86211 0.92091 1.20540 0.99077 0.91345 1.12180 1.20724 0.94153 0.96782 0.98275 1.20712 0.94163 0.97273 1.08813 1.20771 0.98934 0.91676 0.97779 1.19504 0.91863 0.95493 1.07926 1.20774 0.96969 0.92325 0.92248 1.62138 1.52979 1.03752 1.06208 1.19790 0.93947 0.82088 0.97599 1.21063 1.01078 0.90593 1.41339 0.92486 1.24955 0.95518 0.98256 0.95721 1.69946 1.23260 1.13197 1.47095 0.86589 0.81775 0.80584 0.78972 1.20711 1.21341 1.19967 1.21599 0.94562 0.97235 0.90897 1.22217 0.98024 1.02296 0.91774 1.22966 0.99144 0.95742 1.03782 1.22929 1.04733 0.94351 1.00719 0.93436 0.91111 0.93668 0.74527 0.86804 0.87083 0.87233 0.86953 0.95404 0.89944 0.94156 0.99537 0.92955 0.91325 0.96070 0.87313 0.89304 0.89291 0.89480 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.23 9.94 59.84 0.59 1.83 16 2 N -0.74 -12.25 5.80 -65.40 -0.38 -12.63 16 3 C 0.24 4.02 6.63 -83.79 -0.56 3.46 16 4 C -0.21 -3.06 9.31 -39.38 -0.37 -3.42 16 5 C -0.08 -1.08 10.04 -39.62 -0.40 -1.48 16 6 C -0.19 -2.60 10.04 -39.55 -0.40 -3.00 16 7 C -0.07 -1.10 8.32 -39.61 -0.33 -1.43 16 8 C -0.14 -2.45 4.65 -104.42 -0.49 -2.93 16 9 C 0.10 2.01 4.22 -4.98 -0.02 1.99 16 10 N -0.53 -10.96 4.37 -237.51 -1.04 -12.00 16 11 C 0.19 4.78 4.59 -4.97 -0.02 4.76 16 12 C -0.50 -13.38 8.60 -34.44 -0.30 -13.68 16 13 H 0.06 1.46 6.17 -52.49 -0.32 1.14 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 16 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 20 C 0.09 1.59 5.11 -3.82 -0.02 1.57 16 21 C -0.12 -2.22 4.97 -90.62 -0.45 -2.67 16 22 C -0.18 -2.97 9.98 -26.70 -0.27 -3.24 16 23 C -0.19 -2.78 10.25 -26.70 -0.27 -3.06 16 24 H 0.05 0.58 7.95 -51.93 -0.41 0.17 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.52 7.95 -51.93 -0.41 0.10 16 27 H 0.42 7.75 5.58 -40.82 -0.23 7.53 16 28 H 0.11 1.47 6.74 -52.49 -0.35 1.12 16 29 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.11 1.26 8.06 -52.48 -0.42 0.83 16 31 H 0.11 1.57 8.04 -52.48 -0.42 1.15 16 32 H 0.03 0.53 7.98 -51.93 -0.41 0.11 16 33 H 0.08 1.70 6.26 -51.93 -0.33 1.37 16 34 H 0.04 1.09 6.95 -51.93 -0.36 0.73 16 35 H -0.01 -0.36 8.00 -51.93 -0.42 -0.77 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 37 H 0.07 1.21 5.87 -51.93 -0.30 0.90 16 38 H 0.02 0.40 7.79 -51.93 -0.40 0.00 16 39 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 40 H 0.09 1.48 8.03 -51.93 -0.42 1.06 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -28.50 344.87 -10.78 -39.28 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.89 Total: 9.27 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -3.38 Total: -19.83 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.68 Total: -49.92 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.50 -10.78 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180029851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.422 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds