Wall clock time and date at job start Mon Mar 30 2020 01:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39669 * 120.00353 * 2 1 4 4 C 1.38938 * 120.07387 * 359.97438 * 3 2 1 5 5 C 1.38079 * 119.92368 * 179.97438 * 4 3 2 6 6 C 1.38302 * 120.07711 * 0.02562 * 5 4 3 7 7 C 1.38266 * 120.15175 * 359.97438 * 6 5 4 8 8 C 1.38127 * 120.07239 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.03545 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.46931 * 260.01759 * 9 8 7 11 11 C 1.46905 * 111.00002 * 190.00160 * 10 9 8 12 12 C 1.50696 * 109.47129 * 75.42902 * 11 10 9 13 13 H 1.08000 * 120.00248 * 355.86610 * 12 11 10 14 14 C 1.37878 * 120.00203 * 175.87395 * 12 11 10 15 15 N 1.31512 * 119.99810 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00038 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47386 * 89.99921 * 16 14 12 18 18 H 1.48507 * 109.46732 * 209.99668 * 16 14 12 19 19 H 1.48499 * 109.46917 * 329.99165 * 16 14 12 20 20 C 1.46905 * 110.99922 * 66.04842 * 10 9 8 21 21 C 1.53001 * 109.46735 * 195.78140 * 20 10 9 22 22 C 1.52998 * 117.49821 * 244.13482 * 21 20 10 23 23 C 1.52994 * 117.49731 * 175.47716 * 21 20 10 24 24 H 1.09005 * 109.46905 * 59.99992 * 1 2 3 25 25 H 1.09003 * 109.47574 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47228 * 300.00233 * 1 2 3 27 27 H 0.97003 * 119.99711 * 179.97438 * 2 1 3 28 28 H 1.07998 * 120.03377 * 359.95712 * 4 3 2 29 29 H 1.08009 * 119.95973 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.92554 * 179.72823 * 6 5 4 31 31 H 1.08003 * 119.96369 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47655 * 20.01484 * 9 8 7 33 33 H 1.09000 * 109.47342 * 140.02242 * 9 8 7 34 34 H 1.08996 * 109.46749 * 195.42977 * 11 10 9 35 35 H 1.08998 * 109.47075 * 315.43074 * 11 10 9 36 36 H 0.96996 * 120.00149 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.46529 * 315.77989 * 20 10 9 38 38 H 1.08998 * 109.47043 * 75.78245 * 20 10 9 39 39 H 1.08998 * 115.55034 * 29.80899 * 21 20 10 40 40 H 1.09004 * 117.50083 * 0.02562 * 22 21 20 41 41 H 1.09001 * 117.50049 * 145.02010 * 22 21 20 42 42 H 1.09003 * 117.50157 * 214.98012 * 23 21 20 43 43 H 1.09001 * 117.50014 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1634 1.2095 0.0000 4 6 1.4703 2.4137 -0.0005 5 6 2.1639 3.6076 0.0000 6 6 3.5469 3.6058 0.0005 7 6 4.2398 2.4093 0.0011 8 6 3.5523 1.2113 0.0005 9 6 4.3083 -0.0923 0.0005 10 7 4.3468 -0.6360 -1.3637 11 6 4.8638 -2.0110 -1.3680 12 6 3.8002 -2.9492 -0.8586 13 1 2.8608 -2.5563 -0.4987 14 6 4.0264 -4.3093 -0.8517 15 7 5.1702 -4.7879 -1.2902 16 14 2.7077 -5.4723 -0.2209 17 1 1.8247 -5.8757 -1.3446 18 1 3.3490 -6.6782 0.3622 19 1 1.9013 -4.7876 0.8213 20 6 5.1374 0.2265 -2.2520 21 6 4.8408 -0.1339 -3.7091 22 6 5.9911 -0.6980 -4.5455 23 6 5.4891 0.7263 -4.7956 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.9499 -0.8401 0.0004 28 1 0.3903 2.4158 -0.0017 29 1 1.6257 4.5441 0.0000 30 1 4.0870 4.5411 -0.0035 31 1 5.3198 2.4114 0.0019 32 1 5.3258 0.0777 0.3527 33 1 3.8091 -0.8018 0.6604 34 1 5.1399 -2.2921 -2.3842 35 1 5.7406 -2.0715 -0.7233 36 1 5.3292 -5.7447 -1.2858 37 1 4.8739 1.2692 -2.0748 38 1 6.1985 0.0804 -2.0503 39 1 3.8404 -0.5206 -3.9035 40 1 6.9591 -0.8127 -4.0576 41 1 5.7474 -1.4555 -5.2904 42 1 4.9155 0.9052 -5.7050 43 1 6.1266 1.5492 -4.4724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180029851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:20 Heat of formation + Delta-G solvation = 38.412089 kcal Electronic energy + Delta-G solvation = -21657.698394 eV Core-core repulsion = 18702.608960 eV Total energy + Delta-G solvation = -2955.089433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66896 -38.94464 -36.87673 -36.17520 -34.67609 -32.35020 -30.42432 -29.49432 -27.87683 -26.57365 -25.62680 -23.25374 -23.07918 -22.30083 -21.66725 -20.97327 -18.68789 -18.06925 -17.08149 -16.94436 -16.53584 -16.11479 -15.83688 -15.40722 -15.00503 -14.93837 -14.79806 -14.51683 -14.33978 -13.94691 -13.44611 -13.28666 -13.17151 -13.01249 -12.84645 -12.66185 -12.51895 -12.35498 -12.25791 -12.01508 -11.87019 -11.46222 -11.40003 -11.09111 -10.85997 -10.69837 -10.54243 -9.56872 -8.96427 -8.16697 -8.10681 -6.25543 0.62838 0.90289 1.40195 1.40999 1.50859 2.40092 2.80797 2.92813 3.05663 3.16392 3.46734 3.93396 4.03331 4.06772 4.10507 4.25066 4.40659 4.41945 4.46557 4.55881 4.67072 4.72115 4.75651 4.77320 4.79386 4.83441 4.90755 4.93664 5.03563 5.07001 5.22182 5.25755 5.29168 5.31210 5.42544 5.57008 5.70446 5.76515 5.86486 6.12264 6.16744 6.42387 6.67230 6.68659 6.83696 6.98870 7.43183 8.94129 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.007099 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.826977 B = 3942.996932 C = 5444.028171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.755 5.755 3 C 0.222 3.778 4 C -0.211 4.211 5 C -0.074 4.074 6 C -0.187 4.187 7 C -0.078 4.078 8 C -0.167 4.167 9 C 0.113 3.887 10 N -0.525 5.525 11 C 0.209 3.791 12 C -0.510 4.510 13 H 0.064 0.936 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.961 3.039 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.262 1.262 20 C 0.091 3.909 21 C -0.151 4.151 22 C -0.191 4.191 23 C -0.151 4.151 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.401 0.599 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.014 0.986 35 H -0.047 1.047 36 H 0.262 0.738 37 H 0.083 0.917 38 H 0.012 0.988 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 15.511 0.184 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.384 5.384 3 C 0.116 3.884 4 C -0.234 4.234 5 C -0.093 4.093 6 C -0.207 4.207 7 C -0.097 4.097 8 C -0.172 4.172 9 C -0.014 4.014 10 N -0.249 5.249 11 C 0.083 3.917 12 C -0.549 4.549 13 H 0.082 0.918 14 C -0.195 4.195 15 N -0.575 5.575 16 Si 0.787 3.213 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.186 1.186 20 C -0.037 4.037 21 C -0.169 4.169 22 C -0.228 4.228 23 C -0.188 4.188 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.237 0.763 28 H 0.150 0.850 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.032 0.968 35 H -0.029 1.029 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.030 0.970 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.540 15.320 -0.009 16.658 hybrid contribution 0.862 -1.732 0.521 2.004 sum -5.678 13.588 0.512 14.736 Atomic orbital electron populations 1.21619 0.79428 1.02873 1.01273 1.44928 1.06487 1.05909 1.81092 1.17890 0.90582 0.87035 0.92863 1.20815 1.00107 0.90912 1.11569 1.21153 0.94251 0.97662 0.96242 1.21048 0.94618 0.97594 1.07428 1.20926 0.99466 0.91704 0.97603 1.19354 0.92302 0.94704 1.10797 1.20626 0.96754 0.93328 0.90736 1.62100 1.52818 1.02228 1.07726 1.19404 0.92515 0.84790 0.94977 1.21407 1.01503 0.91156 1.40804 0.91801 1.25834 0.97664 1.00076 0.95924 1.70088 1.25367 1.13535 1.48518 0.85500 0.79009 0.78144 0.78686 1.20128 1.21260 1.18565 1.21598 0.93635 0.97407 0.91023 1.22125 0.97408 1.05254 0.92154 1.22985 0.98339 0.97768 1.03675 1.23020 1.02960 0.93286 0.99567 0.92665 0.90633 0.92007 0.76331 0.85030 0.83733 0.84451 0.86307 0.96057 0.92127 0.96775 1.02949 0.92949 0.89850 0.96954 0.89435 0.89913 0.89371 0.87384 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.27 9.94 127.77 1.27 3.54 16 2 N -0.76 -24.84 5.80 -360.81 -2.09 -26.93 16 3 C 0.22 7.20 6.63 38.22 0.25 7.46 16 4 C -0.21 -5.63 9.31 22.40 0.21 -5.43 16 5 C -0.07 -1.72 10.04 22.25 0.22 -1.49 16 6 C -0.19 -4.50 10.04 22.29 0.22 -4.28 16 7 C -0.08 -2.25 8.32 22.25 0.19 -2.06 16 8 C -0.17 -5.67 4.65 -19.74 -0.09 -5.77 16 9 C 0.11 4.53 4.22 85.55 0.36 4.89 16 10 N -0.52 -22.80 4.37 -905.35 -3.96 -26.76 16 11 C 0.21 11.11 4.59 85.55 0.39 11.51 16 12 C -0.51 -28.20 8.60 25.60 0.22 -27.98 16 13 H 0.06 3.38 6.17 -2.91 -0.02 3.36 16 14 C 0.00 0.16 5.46 84.66 0.46 0.62 16 15 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 16 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 C 0.09 3.47 5.11 86.30 0.44 3.91 16 21 C -0.15 -5.43 4.97 -10.80 -0.05 -5.49 16 22 C -0.19 -6.37 9.98 30.62 0.31 -6.07 16 23 C -0.15 -4.14 10.25 30.61 0.31 -3.82 16 24 H 0.05 1.25 7.95 -2.38 -0.02 1.23 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.29 7.95 -2.39 -0.02 1.27 16 27 H 0.40 15.33 5.58 -92.71 -0.52 14.81 16 28 H 0.13 2.97 6.74 -2.91 -0.02 2.95 16 29 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.12 3.18 8.04 -2.91 -0.02 3.16 16 32 H 0.02 0.85 7.98 -2.39 -0.02 0.83 16 33 H 0.06 2.64 6.26 -2.39 -0.01 2.63 16 34 H 0.01 0.82 6.95 -2.39 -0.02 0.80 16 35 H -0.05 -2.76 8.00 -2.39 -0.02 -2.78 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.08 2.90 5.87 -2.39 -0.01 2.88 16 38 H 0.01 0.48 7.79 -2.39 -0.02 0.47 16 39 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 40 H 0.08 2.84 8.03 -2.38 -0.02 2.82 16 41 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -63.47 344.87 1.44 -62.03 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.47 Total: 32.22 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 4.72 Total: -30.47 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -5.77 Total: -109.61 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -63.47 1.44 -62.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180029851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.441 kcal (2) G-P(sol) polarization free energy of solvation -63.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds