Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38128 * 119.97080 * 2 1 4 4 C 1.38876 * 119.93935 * 180.02562 * 3 2 1 5 5 N 1.39742 * 120.06064 * 179.97438 * 4 3 2 6 6 S 1.65604 * 119.99909 * 75.19355 * 5 4 3 7 7 O 1.42092 * 106.40477 * 177.77013 * 6 5 4 8 8 O 1.42104 * 106.40139 * 310.68940 * 6 5 4 9 9 C 1.76198 * 107.21756 * 64.22733 * 6 5 4 10 10 H 1.08002 * 120.00321 * 4.87569 * 9 6 5 11 11 C 1.37878 * 120.00096 * 184.87515 * 9 6 5 12 12 N 1.31518 * 120.00080 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00328 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47152 * 59.99738 * 13 11 9 15 15 H 1.48502 * 109.47369 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47044 * 299.99962 * 13 11 9 17 17 C 1.38914 * 119.87908 * 359.97438 * 4 3 2 18 18 C 1.38087 * 119.93710 * 359.97438 * 17 4 3 19 19 C 1.38358 * 119.96968 * 179.97438 * 2 1 3 20 20 Cl 1.73602 * 119.94093 * 359.72088 * 19 2 1 21 21 H 1.09000 * 109.47232 * 270.02070 * 1 2 3 22 22 H 1.08999 * 109.47308 * 30.01965 * 1 2 3 23 23 H 1.09005 * 109.46931 * 150.02495 * 1 2 3 24 24 H 1.07999 * 120.03333 * 359.97438 * 3 2 1 25 25 H 0.97002 * 120.00571 * 255.19238 * 5 4 3 26 26 H 0.97000 * 120.00174 * 179.97438 * 12 11 9 27 27 H 1.08002 * 120.03319 * 180.02562 * 17 4 3 28 28 H 1.07998 * 119.96861 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1966 0.0000 4 6 3.5857 1.1958 -0.0005 5 7 4.2864 2.4049 -0.0011 6 16 4.3850 3.3054 1.3852 7 8 5.1950 4.4311 1.0758 8 8 3.0601 3.4156 1.8871 9 6 5.2854 2.3530 2.5628 10 1 5.7189 1.4068 2.2743 11 6 5.4368 2.8157 3.8528 12 7 4.9086 3.9677 4.2045 13 14 6.3920 1.8064 5.1011 14 1 7.7848 1.6164 4.6224 15 1 6.4088 2.5180 6.4044 16 1 5.7413 0.4821 5.2690 17 6 4.2771 -0.0091 -0.0005 18 6 3.5822 -1.2023 0.0005 19 6 2.1981 -1.1986 0.0005 20 17 1.3278 -2.7006 0.0085 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8903 -0.5135 24 1 1.6571 2.1319 -0.0004 25 1 4.7151 2.7168 -0.8134 26 1 5.0148 4.2930 5.1121 27 1 5.3571 -0.0126 -0.0005 28 1 4.1192 -2.1393 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972288.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = -82.008298 kcal Electronic energy + Delta-G solvation = -16989.001408 eV Core-core repulsion = 13963.792230 eV Total energy + Delta-G solvation = -3025.209177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.38750 -36.50393 -35.30911 -34.44934 -34.06471 -33.12759 -32.29454 -28.67149 -26.76538 -26.15658 -22.37065 -21.24179 -19.13421 -17.63863 -16.97014 -16.34867 -16.18036 -15.63911 -14.96926 -14.05542 -13.96294 -13.90650 -13.52774 -13.01973 -12.45247 -12.31769 -12.10680 -11.97561 -11.49082 -11.33183 -11.27724 -11.22145 -10.65499 -10.65200 -10.59306 -10.39792 -10.28419 -9.44924 -9.27120 -8.83666 -8.63005 -8.17631 -6.74519 -5.37092 1.24714 1.50014 2.19437 2.28214 3.07140 3.11362 3.16845 3.78124 4.02262 4.54790 4.60801 4.91734 4.96174 5.37693 5.49714 5.57523 5.72552 5.74584 5.75936 5.97504 6.15127 6.25838 6.42479 6.50407 6.61427 6.76263 7.02374 7.28566 7.78080 7.91048 8.84431 10.19938 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.006465 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.382672 B = 4330.047271 C = 4931.100751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.070 4.070 3 C -0.099 4.099 4 C 0.174 3.826 5 N -1.088 6.088 6 S 2.705 3.295 7 O -1.002 7.002 8 O -0.992 6.992 9 C -1.016 5.016 10 H 0.103 0.897 11 C 0.134 3.866 12 N -0.844 5.844 13 Si 0.921 3.079 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.263 1.263 17 C -0.113 4.113 18 C -0.102 4.102 19 C -0.043 4.043 20 Cl -0.080 7.080 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.141 0.859 25 H 0.412 0.588 26 H 0.292 0.708 27 H 0.137 0.863 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 -10.374 -8.083 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.072 4.072 3 C -0.120 4.120 4 C 0.078 3.922 5 N -0.838 5.838 6 S 2.807 3.193 7 O -0.993 6.993 8 O -0.982 6.982 9 C -1.150 5.150 10 H 0.121 0.879 11 C -0.084 4.084 12 N -0.474 5.474 13 Si 0.745 3.255 14 H -0.188 1.188 15 H -0.201 1.201 16 H -0.188 1.188 17 C -0.134 4.134 18 C -0.122 4.122 19 C -0.070 4.070 20 Cl -0.051 7.051 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.159 0.841 25 H 0.247 0.753 26 H 0.102 0.898 27 H 0.155 0.845 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.993 -9.483 -7.706 13.200 hybrid contribution 1.067 -0.997 0.614 1.584 sum -3.926 -10.479 -7.092 13.248 Atomic orbital electron populations 1.20854 0.90314 1.03057 1.03129 1.19594 0.96683 0.90917 0.99999 1.21429 0.93482 0.97985 0.99066 1.17298 0.90186 0.85873 0.98837 1.53947 1.67429 1.32563 1.29830 1.00863 0.74292 0.72839 0.71330 1.93393 1.70857 1.50549 1.84462 1.93372 1.40322 1.86275 1.78239 1.30408 1.52193 1.21528 1.10865 0.87880 1.24730 0.91843 0.93885 0.97960 1.69886 1.37847 1.17717 1.21924 0.86189 0.80355 0.80335 0.78662 1.18791 1.20066 1.18765 1.21431 1.00760 0.91050 1.00134 1.20842 0.91696 0.98732 1.00903 1.20748 0.92265 0.86152 1.07871 1.98325 1.77016 1.32715 1.97070 0.90477 0.91064 0.91072 0.84112 0.75332 0.89758 0.84497 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.61 36.00 0.35 -1.09 15 2 C -0.07 -1.07 5.88 -104.62 -0.62 -1.68 15 3 C -0.10 -1.71 8.94 -39.39 -0.35 -2.06 15 4 C 0.17 3.14 5.80 -83.77 -0.49 2.65 15 5 N -1.09 -21.09 5.70 32.42 0.18 -20.90 15 6 S 2.71 70.01 5.02 -107.50 -0.54 69.47 15 7 O -1.00 -28.56 18.02 -57.17 -1.03 -29.59 15 8 O -0.99 -28.10 16.96 -57.17 -0.97 -29.07 15 9 C -1.02 -27.47 9.66 30.60 0.30 -27.18 15 10 H 0.10 2.54 7.81 -52.49 -0.41 2.13 15 11 C 0.13 3.70 5.46 -17.82 -0.10 3.60 15 12 N -0.84 -24.51 13.10 55.43 0.73 -23.78 15 13 Si 0.92 20.41 29.54 -169.99 -5.02 15.39 15 14 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 16 H -0.26 -5.67 7.11 56.52 0.40 -5.27 15 17 C -0.11 -1.77 9.97 -39.39 -0.39 -2.17 15 18 C -0.10 -1.45 9.82 -39.57 -0.39 -1.84 15 19 C -0.04 -0.63 6.32 -39.47 -0.25 -0.88 15 20 Cl -0.08 -0.99 27.28 -51.86 -1.41 -2.41 15 21 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.07 0.78 8.08 -51.93 -0.42 0.36 15 23 H 0.07 0.77 6.90 -51.93 -0.36 0.41 15 24 H 0.14 2.45 7.95 -52.49 -0.42 2.03 15 25 H 0.41 6.61 8.95 -34.47 -0.31 6.30 15 26 H 0.29 7.64 8.31 -40.82 -0.34 7.30 15 27 H 0.14 1.92 8.06 -52.49 -0.42 1.50 15 28 H 0.13 1.53 8.06 -52.49 -0.42 1.11 15 LS Contribution 280.67 15.07 4.23 4.23 Total: -1.00 -33.49 280.67 -8.09 -41.58 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -2.32 Total: 5.72 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: -1.94 Total: -30.64 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.91 Total: -44.68 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -2.00 Total: -58.66 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 70.01 SS G_CDS: -0.54 Total: 69.47 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.41 Total: -2.41 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.49 -8.09 -41.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972288.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.427 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds